View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3786_low_2 (Length: 685)

Name: NF3786_low_2
Description: NF3786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3786_low_2
NF3786_low_2
[»] chr4 (49 HSPs)
chr4 (19-675)||(7822777-7823433)
chr4 (19-675)||(7813288-7813941)
chr4 (19-675)||(7800445-7801101)
chr4 (30-397)||(7789908-7790275)
chr4 (30-397)||(7771223-7771590)
chr4 (24-422)||(7237584-7237985)
chr4 (574-642)||(7908665-7908733)
chr4 (574-642)||(7790443-7790511)
chr4 (574-650)||(7878746-7878822)
chr4 (574-641)||(7773456-7773523)
chr4 (54-185)||(7908174-7908305)
chr4 (576-642)||(7771760-7771826)
chr4 (30-403)||(7773691-7774085)
chr4 (55-254)||(7786287-7786483)
chr4 (574-650)||(49043790-49043866)
chr4 (574-644)||(48864398-48864468)
chr4 (55-254)||(7765465-7765661)
chr4 (56-177)||(7877568-7877689)
chr4 (269-403)||(7877807-7877941)
chr4 (564-642)||(48156059-48156137)
chr4 (574-636)||(48853044-48853106)
chr4 (574-632)||(49038518-49038576)
chr4 (574-627)||(48147358-48147411)
chr4 (263-336)||(49048508-49048581)
chr4 (195-240)||(50669042-50669087)
chr4 (268-327)||(7786524-7786583)
chr4 (574-633)||(7786827-7786886)
chr4 (201-240)||(37827034-37827073)
chr4 (574-633)||(45371713-45371772)
chr4 (576-629)||(7237386-7237439)
chr4 (208-249)||(7908325-7908366)
chr4 (574-642)||(45384522-45384590)
chr4 (574-642)||(48870923-48870991)
chr4 (574-642)||(48876227-48876295)
chr4 (574-642)||(48886609-48886677)
chr4 (574-622)||(48903318-48903366)
chr4 (574-650)||(49048177-49048253)
chr4 (578-630)||(50666682-50666734)
chr4 (268-327)||(7765702-7765761)
chr4 (574-633)||(7766005-7766064)
chr4 (206-249)||(7877727-7877770)
chr4 (200-239)||(50250831-50250870)
chr4 (71-177)||(37827106-37827212)
chr4 (581-630)||(37826632-37826681)
chr4 (577-642)||(48863631-48863696)
chr4 (370-442)||(7765804-7765876)
chr4 (268-328)||(37826937-37826997)
chr4 (200-240)||(48170611-48170651)
chr4 (124-164)||(48705484-48705524)
[»] chr5 (3 HSPs)
chr5 (574-630)||(9120126-9120182)
chr5 (577-633)||(42561972-42562028)
chr5 (574-615)||(179421-179462)
[»] chr8 (3 HSPs)
chr8 (200-259)||(12200299-12200358)
chr8 (200-259)||(12444727-12444786)
chr8 (416-453)||(4962336-4962373)
[»] chr6 (4 HSPs)
chr6 (198-249)||(21979678-21979729)
chr6 (575-633)||(21979267-21979325)
chr6 (574-627)||(21016184-21016237)
chr6 (269-326)||(21979577-21979634)
[»] chr3 (7 HSPs)
chr3 (574-648)||(11024127-11024201)
chr3 (574-642)||(11015121-11015189)
chr3 (23-185)||(47452011-47452173)
chr3 (564-629)||(11005571-11005636)
chr3 (574-642)||(47451530-47451598)
chr3 (201-240)||(11006002-11006041)
chr3 (201-240)||(11024577-11024616)
[»] chr7 (2 HSPs)
chr7 (200-249)||(48883793-48883842)
chr7 (574-633)||(48884187-48884246)
[»] chr1 (5 HSPs)
chr1 (577-632)||(24367531-24367586)
chr1 (577-630)||(24310582-24310635)
chr1 (205-240)||(24310168-24310203)
chr1 (577-632)||(24416144-24416199)
chr1 (580-633)||(24323139-24323192)


Alignment Details
Target: chr4 (Bit Score: 638; Significance: 0; HSPs: 49)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 19 - 675
Target Start/End: Original strand, 7822777 - 7823433
Alignment:
Q  19 cttccttcaccgaaccttaatttcttgcttcctaaatcttattttccttttgaaattatagggtcatgtggagggtttttatttttataccgttttccag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7822777 cttccttcaccgaaccttaatttcttgcttcctaaatcttattttccttttgaaattatagggtcatgtggagggtttttatttttataccgttttccag 7822876  T
Q  119 acatttacctatggaatccatctactggatttaagaaacaaataccagtgtcttcttttgattccaacaaaccacatgataatctatatggttttggtta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7822877 acatttacctatggaatccatctactggatttaagaaacaaataccagtgtcttcttttgattccaacaaaccacatgataatctatatggttttggtta 7822976  T
Q  219 tgaccagtcaagagatgattacgtgctggttgtattttcccatgtttcgtcacatttggaggttttctcgtttccagataatacctggaaagaaattgat 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7822977 tgaccagtcaagagatgattacgtgctggttgtattttcccatgtttcgtcacattnggaggttttctcgtttccagataatacctggaaagaaattgat 7823076  T
Q  319 ggtactcacatcgcttatgttgtcgatccttctcatagaaaagggtttctatttaatggagctattcattggctggcttggcgtcaagatttagaattgg 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  7823077 ggtactcacatcgcttatgttgtcgatccttctcatagaaaagggtttctatttaatggctctattcattggctggcttggcgtcaagatttagaattgg 7823176  T
Q  419 atgttattattgtctttgatttaattaaaaggaaactgattgaaacacctattcaaaatgattttggcggactgactttagatgctgattctggtttgtg 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7823177 atgttattattgtctttgatttaattaaaaggaaactgattgaaacacctattcaaaatgattttggcggactgactttagatgctgattctggtttgtg 7823276  T
Q  519 ggtatttggcgaaactctgagcatatggattctaacttctgatggtgaaagaatggaaatatgggtgttgaaagattacaaagtgcattcgtcttggaat 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  7823277 ggtatttggcgaaactctgagcatatggattctaacttctgatggtgaaagaatggaaatatgggtgtttaaagattacaaagtgcatttgtcttggaat 7823376  T
Q  619 aaaactcttgttctttctgttgatttcattccagataacttgaatgtttcccctatg 675  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7823377 aaaactcttgttctttctgttgatttcattccagataacttgaatgtttcccctatg 7823433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 19 - 675
Target Start/End: Original strand, 7813288 - 7813941
Alignment:
Q  19 cttccttcaccgaaccttaatttcttgcttcctaaatcttattttccttttgaaattatagggtcatgtggagggtttttatttttataccgttttccag 118  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7813288 cttccttcagcgaaccttaatttcttgcttcctaaatcgtattttccttttgaaattatagggtcatgtggagggtttttatttttataccgttttccag 7813387  T
Q  119 acatttacctatggaatccatctactggatttaagaaacaaataccagtgtcttcttttgattccaacaaaccacatgataatctatatggttttggtta 218  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7813388 acatttacctgtggaatccatctactggatttaagaaacaaatacccgtgtcttcttttgattccaacaaaccacatgataatctatatggttttggtta 7813487  T
Q  219 tgaccagtcaagagatgattacgtgctggttgtattttcccatgtttcgtcacatttggaggttttctcgtttccagataatacctggaaagaaattgat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  7813488 tgaccagtcaagagatgattacgtgctggttgtattttcccatgtttcgtcacatttggaggttttctcctttccagataatacctggaaagaaattgaa 7813587  T
Q  319 ggtactcacatcgcttatgttgtcgatccttctcatagaaaagggtttctatttaatggagctattcattggctggcttggcgtcaagatttagaattgg 418  Q
    |||||| || ||||||| | |   ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||   |||||| | ||||    
T  7813588 ggtactaacttcgcttacgct---gatccttctcatagaaaagggtttctatttaatgaggctattcattggctggcttggagttgtgatttaaatttgg 7813684  T
Q  419 atgttattattgtctttgatttaattaaaaggaaactgattgaaacacctattcaaaatgattttggcggactgactttagatgctgattctggtttgtg 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7813685 atgttattattgtctttgatttaattaaaaggaaactgattgaaatacctcttcaaaatgatttcggcggactgactttagatgctgattctggtttgtg 7813784  T
Q  519 ggtatttggcgaaactctgagcatatggattctaacttctgatggtgaaagaatggaaatatgggtgttgaaagattacaaagtgcattcgtcttggaat 618  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  7813785 ggtatttggcgaaactctgagcatatggattctaacttctgatggtgaaagaattgaaatatgggtgttgaaagaatacaaagtgcattcgtcttggaat 7813884  T
Q  619 aaaactcttgttctttctgttgatttcattccagataacttgaatgtttcccctatg 675  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7813885 aaaactcttgttctttctgttgatttcattccagataacttgaatgtttcccctatg 7813941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 19 - 675
Target Start/End: Original strand, 7800445 - 7801101
Alignment:
Q  19 cttccttcaccgaaccttaatttcttgcttcctaaatcttattttccttttgaaattatagggtcatgtggagggtttttatttttataccgttttccag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7800445 cttccttcaccgaaccttaatttcttgcttcctaaatcttattttccttttgaaattatagggtcatgtggagggtttttatttttataccgttttccag 7800544  T
Q  119 acatttacctatggaatccatctactggatttaagaaacaaataccagtgtcttcttttgattccaacaaaccacatgataatctatatggttttggtta 218  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  7800545 acatttacctgtggaatccatctactggatttaagaaacaaatacccgtgtcttcttttgattccaacaaaccatatgataatttatatggttttggtta 7800644  T
Q  219 tgaccagtcaagagatgattacgtgctggttgtattttcccatgtttcgtcacatttggaggttttctcgtttccagataatacctggaaagaaattgat 318  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  7800645 tgaccagtcaagagatgagtacgtgctggttgtattttcccatgtttcatcacatttggaggttttctcgtttccagataatacctggaaagaaattgac 7800744  T
Q  319 ggtactcacatcgcttatgttgtcgatccttctcatagaaaagggtttctatttaatggagctattcattggctggcttggcgtcaagatttagaattgg 418  Q
    |||||| || | | ||| | ||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||| |||  |||||||| |||     
T  7800745 ggtactaactttgattacgctgtcgatccttctcatataaaagggttgctatttaatggggctattcattggctggcttggagtcgtgatttagatttga 7800844  T
Q  419 atgttattattgtctttgatttaattaaaaggaaactgattgaaacacctattcaaaatgattttggcggactgactttagatgctgattctggtttgtg 518  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7800845 atgttattattgtgtttgatttaattaaaaggaaactgattgaaatacctcttcaaaatgattttggcggacttactttagatgctgattctggtttgtg 7800944  T
Q  519 ggtatttggcgaaactctgagcatatggattctaacttctgatggtgaaagaatggaaatatgggtgttgaaagattacaaagtgcattcgtcttggaat 618  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7800945 ggtattttgcgaaactctgagcatatggattctaacttctgatggtgaaagaattgaaatatgggtgttgaaagattacaaagtgcattcgtcttggaat 7801044  T
Q  619 aaaactcttgttctttctgttgatttcattccagataacttgaatgtttcccctatg 675  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7801045 aaaactcttgttctttctgttgatttcattccagataacttgaacgtttcccctatg 7801101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 30 - 397
Target Start/End: Original strand, 7789908 - 7790275
Alignment:
Q  30 gaaccttaatttcttgcttcctaaatcttattttccttttgaaattatagggtcatgtggagggtttttatttttataccgttttccagacatttaccta 129  Q
    |||||||||||| | ||||||  |||||||||||||| || |||||| ||| || ||| |||||||| || |||| |||||   |||| ||||  || ||    
T  7789908 gaaccttaatttttcgcttccagaatcttattttcctgtttaaattagaggttcgtgtagagggtttatacttttgtaccgacctccaaacatccactta 7790007  T
Q  130 tggaatccatctactggatttaagaaacaaataccagtgtcttcttttgattccaacaaaccacatgataatctatatggttttggttatgaccagtcaa 229  Q
    ||||||||||| ||||||||||| | ||||||||| |||||| | |||||||||||  | | | |  | | | |  ||||||||||||||||||||||||    
T  7790008 tggaatccatccactggatttaaaacacaaataccggtgtctccctttgattccaa--atcaatagcacattgtc-atggttttggttatgaccagtcaa 7790104  T
Q  230 gagatgattacgtgctggttgtattttcccatgtttcgtcacatttggaggttttctcgtttccagataatacctggaaagaaattgatgg---tactca 326  Q
    ||||||||||| || |||||| ||||||||||||||| |||||||||||||||||||| |||  ||||||||| |||||||||||||||||   ||||||    
T  7790105 gagatgattacttggtggttgaattttcccatgtttcatcacatttggaggttttctcatttagagataatacgtggaaagaaattgatggtaatactca 7790204  T
Q  327 catcgcttatgttgtcgatccttctcatagaaaagggtttctatttaatggagctattcattggctggctt 397  Q
    | || |||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||| ||||||    
T  7790205 cttcccttatgttgtcgttccttctcagagaaaagggtttctatttaatggggctattcattggttggctt 7790275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 30 - 397
Target Start/End: Original strand, 7771223 - 7771590
Alignment:
Q  30 gaaccttaatttcttgcttcctaaatcttattttccttttgaaattatagggtcatgtggagggtttttatttttataccgttttccagacatttaccta 129  Q
    |||||||||||| | ||||||  |||||||||||||| ||||||||| ||| || ||| |||||||| || |||| |||||   |||| ||||  || ||    
T  7771223 gaaccttaatttttcgcttccagaatcttattttcctgttgaaattagaggttcgtgtagagggtttatacttttgtaccgacctccaaacatccactta 7771322  T
Q  130 tggaatccatctactggatttaagaaacaaataccagtgtcttcttttgattccaacaaaccacatgataatctatatggttttggttatgaccagtcaa 229  Q
    ||||||||||| | ||||||||| | ||||||||| |||||| | |||||||||||  | | | |  | | | |  ||||||||||||||||||||||||    
T  7771323 tggaatccatccattggatttaaaacacaaataccggtgtctccctttgattccaa--atcaatagcacattgtc-atggttttggttatgaccagtcaa 7771419  T
Q  230 gagatgattacgtgctggttgtattttcccatgtttcgtcacatttggaggttttctcgtttccagataatacctggaaagaaattgatgg---tactca 326  Q
    ||||||||||| || |||||| ||||||||||||||| |||||||||||||||||||| |||  ||||||||| |||||||||||||||||   ||||||    
T  7771420 gagatgattacttggtggttgaattttcccatgtttcatcacatttggaggttttctcatttagagataatacgtggaaagaaattgatggtcatactca 7771519  T
Q  327 catcgcttatgttgtcgatccttctcatagaaaagggtttctatttaatggagctattcattggctggctt 397  Q
    | || ||||||| |||| ||||||||| ||||||||||||||||||||||| |||||||||||| ||||||    
T  7771520 cttcccttatgtcgtcgttccttctcagagaaaagggtttctatttaatggggctattcattggttggctt 7771590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 24 - 422
Target Start/End: Complemental strand, 7237985 - 7237584
Alignment:
Q  24 ttcaccgaaccttaatttcttgcttcctaaatcttattttccttttgaaattatagggtcatgtggagggtttttatttttataccgttttccagacatt 123  Q
    ||||| ||||| |||||| ||| || |  |||||||||||||| ||||||| | ||| |||||| |||||||| || |||| ||||    |||| ||||     
T  7237985 ttcacagaaccgtaattttttgttttcggaatcttattttcctgttgaaatcagaggttcatgtagagggtttatacttttgtaccaacctccaaacatc 7237886  T
Q  124 tacctatggaatccatctactggatttaagaaacaaataccagtgtcttcttttgattccaacaaacca-catgataatctatatggttttggttatgac 222  Q
    ||| ||||||||||||| ||||||||||| ||||||||||| |||||| |||||||||||||   |  | || | |  ||   |||||||||||||||||    
T  7237885 tacgtatggaatccatccactggatttaaaaaacaaatacccgtgtctccttttgattccaaattattagcaagttg-tc---atggttttggttatgac 7237790  T
Q  223 cagtcaagagatgattacgtgctggttgtattttcccatgtttcgtcacatttggaggttttctcgtttccagataatacctggaaagaaattgatggta 322  Q
    |||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| |||  ||||||||  ||||||||||||||| |||    
T  7237789 cagtcaagagatgattacttggtggttgtattttcccatgtttcatcacatttggaggttttctcttttagagataatatgtggaaagaaattgattgta 7237690  T
Q  323 ctcacatcgcttatg------ttgtcgatccttctcatagaaaagggtttctatttaatggagctattcattggctggcttggcgtcaagatttagaatt 416  Q
     |||  || |||| |      |||||| |||||| ||  |||||||||||||||||||||| | |||||||||||| ||||  || |  |||||||| ||    
T  7237689 ttcatttcccttacgttctcattgtcgttccttcccagggaaaagggtttctatttaatggggttattcattggcttgcttatcgccgtgatttagattt 7237590  T
Q  417 ggatgt 422  Q
    ||||||    
T  7237589 ggatgt 7237584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 574 - 642
Target Start/End: Original strand, 7908665 - 7908733
Alignment:
Q  574 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 642  Q
    |||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  7908665 gaaatatgggtgatgaaagaatacaaagtgcattcatcttggaataaaactcttgttctttctgttgat 7908733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 574 - 642
Target Start/End: Original strand, 7790443 - 7790511
Alignment:
Q  574 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 642  Q
    |||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||    
T  7790443 gaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctttctattgat 7790511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 574 - 650
Target Start/End: Original strand, 7878746 - 7878822
Alignment:
Q  574 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgatttcattcc 650  Q
    |||||||||||| ||||||| |||||||||||||| ||||||| |||||||||||||||||| |||||| |||||||    
T  7878746 gaaatatgggtgatgaaagaatacaaagtgcattcatcttggattaaaactcttgttctttcggttgatgtcattcc 7878822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 574 - 641
Target Start/End: Complemental strand, 7773523 - 7773456
Alignment:
Q  574 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttga 641  Q
    |||||||||||| ||||||| |||||||||||||||||||||| |||| |||||||||||||||||||    
T  7773523 gaaatatgggtgatgaaagaatacaaagtgcattcgtcttggattaaatctcttgttctttctgttga 7773456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 54 - 185
Target Start/End: Original strand, 7908174 - 7908305
Alignment:
Q  54 atcttattttccttttgaaattatagggtcatgtggagggtttttatttttataccgttttccagacatttacctatggaatccatctactggatttaag 153  Q
    |||| |||||||  ||||||||| ||| |||||| |||||||| || |||| ||||||  ||||||||| ||| |||||||||||||||||||||||||     
T  7908174 atctcattttccggttgaaattagaggttcatgtagagggtttatacttttgtaccgtcctccagacatctacatatggaatccatctactggatttaaa 7908273  T
Q  154 aaacaaataccagtgtcttcttttgattccaa 185  Q
    ||||| ||||   ||||| || ||||||||||    
T  7908274 aaacatatacacctgtctcctgttgattccaa 7908305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 576 - 642
Target Start/End: Original strand, 7771760 - 7771826
Alignment:
Q  576 aatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 642  Q
    |||||||||| ||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||    
T  7771760 aatatgggtgatgaaagaatacaaagtgcattcgtcatggactaaaactcttgttctttctgttgat 7771826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 30 - 403
Target Start/End: Complemental strand, 7774085 - 7773691
Alignment:
Q  30 gaaccttaatttcttgcttcctaaatcttattttccttttgaaattatagggtcatgtggagggtttttatttttataccgttttccagacatttaccta 129  Q
    |||||||||||| | ||||||  |||||||||||||   |||||||| ||| || ||| |||||||| || |||| || |||   ||| |||| ||| ||    
T  7774085 gaaccttaatttttcgcttccagaatcttattttccggctgaaattagaggttcgtgtagagggtttatacttttgtatcgtgacccaaacatctacata 7773986  T
Q  130 tggaatccatctactggatttaagaaacaaataccagtgtcttcttttgattccaa-----caaacc------acatgataatctatatggttttggtta 218  Q
    ||||||||||| ||||||||||| ||||||||||| | |||| |||||  ||||||     |||| |       |||  | || || |||||||||||||    
T  7773985 tggaatccatccactggatttaaaaaacaaatacctgggtctccttttcgttccaaattagcaaaactttgtagcat--tcatatacatggttttggtta 7773888  T
Q  219 tgaccagtcaagagatgattacgtgctggttgtattttcccat------------gtttcgtcacatttggaggttttctcgtttccagataatacctgg 306  Q
    |||||||  ||||||||||||| || |||||||||| ||| ||            |||||  ||| |||| || ||||||| |||  ||||||||| |||    
T  7773887 tgaccaggtaagagatgattacttggtggttgtattgtcctatcatataaccgtagtttcaacacgtttgaagtttttctcatttagagataatacatgg 7773788  T
Q  307 aaagaaattgatggtactcacatcgcttatgttgtcgatccttctcatagaaaagggtttctatttaatggagctattcattggctggcttggcgtc 403  Q
    ||||||| ||| ||| ||| | | ||||||  ||||   |||||||  ||||||||||||||||||||||| |||||||||||| |||||| |||||    
T  7773787 aaagaaactgagggtgctccctttgcttattgtgtcatcccttctcgcagaaaagggtttctatttaatggggctattcattggttggctttgcgtc 7773691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 55 - 254
Target Start/End: Original strand, 7786287 - 7786483
Alignment:
Q  55 tcttattttccttttgaaattatagggtcatgtggagggtttttatttttataccgttttccagacatttacctatggaatccatctactggatttaaga 154  Q
    ||||||||||| |||||||||| |||||||||| |||| ||| ||||| | || |||  |||| |||||||| ||||||||||||| || ||||  || |    
T  7786287 tcttattttccctttgaaattaaagggtcatgtagaggttttatatttatgtatcgtcatccaaacatttacatatggaatccatccaccggatcgaaaa 7786386  T
Q  155 aacaaataccagtgtcttcttttgattccaacaaaccacatgataatctatatggttttggttatgaccagtcaagagatgattacgtgctggttgtatt 254  Q
     ||||||||   ||||| ||||| ||   | |||| |  ||  ||||||||||||||||||||| || ||||| ||||||||||| ||| ||||| ||||    
T  7786387 gacaaatacttatgtctgcttttaat---accaaagcgtatattaatctatatggttttggttacgatcagtctagagatgattatgtggtggttttatt 7786483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 574 - 650
Target Start/End: Complemental strand, 49043866 - 49043790
Alignment:
Q  574 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgatttcattcc 650  Q
    |||||||||||| ||||||| ||||||||||||||||| |||| ||| ||||||||| ||||| ||||| |||||||    
T  49043866 gaaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgttttttctattgatgtcattcc 49043790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 574 - 644
Target Start/End: Original strand, 48864398 - 48864468
Alignment:
Q  574 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgattt 644  Q
    |||||||||||| ||||||| |||||||||||||||||||||| ||| | |||||||||| || |||||||    
T  48864398 gaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattcttgttcttcctattgattt 48864468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 254
Target Start/End: Original strand, 7765465 - 7765661
Alignment:
Q  55 tcttattttccttttgaaattatagggtcatgtggagggtttttatttttataccgttttccagacatttacctatggaatccatctactggatttaaga 154  Q
    ||||||||||| |||||||||| |||||||||| |||| ||| ||||| | ||||||  |||| |||| ||| | ||||||||||| || ||||  || |    
T  7765465 tcttattttccctttgaaattaaagggtcatgtagaggttttatatttatgtaccgtcatccaaacatatacatttggaatccatccaccggatcgaaaa 7765564  T
Q  155 aacaaataccagtgtcttcttttgattccaacaaaccacatgataatctatatggttttggttatgaccagtcaagagatgattacgtgctggttgtatt 254  Q
     ||||||||   ||||| ||||| ||   | |||| |  ||  ||||||||||||||||||||| || ||||| ||||||||||| ||| ||||| ||||    
T  7765565 gacaaatacttatgtctgcttttaat---accaaagcgtatattaatctatatggttttggttacgatcagtctagagatgattatgtggtggttttatt 7765661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 177
Target Start/End: Original strand, 7877568 - 7877689
Alignment:
Q  56 cttattttccttttgaaattatagggtcatgtggagggtttttatttttataccgttttccagacatttacctatggaatccatctactggatttaagaa 155  Q
    ||||||||||  ||||||||| ||| |||||  |||||||| || |||| ||| ||  ||||  ||| ||| ||||||||||||| ||||||||||| ||    
T  7877568 cttattttccggttgaaattagaggttcatgcagagggtttatacttttgtactgtcatccaatcatctacatatggaatccatccactggatttaaaaa 7877667  T
Q  156 acaaataccagtgtcttctttt 177  Q
    ||||||||| |||||| |||||    
T  7877668 acaaatacctgtgtctcctttt 7877689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 269 - 403
Target Start/End: Original strand, 7877807 - 7877941
Alignment:
Q  269 cacatttggaggttttctcgtttccagataatacctggaaagaaattgatggtactcacatcgcttatgttgtcgatccttctcatagaaaagggtttct 368  Q
    |||||||| || ||||||| |||  ||||||||| |||||||||| |||  |||||| | || |||||| ||||   |||||||  ||||||||||| ||    
T  7877807 cacatttgaagtttttctcatttagagataatacatggaaagaaactgagagtactcccttcccttatgctgtcatcccttctcgcagaaaagggttgct 7877906  T
Q  369 atttaatggagctattcattggctggcttggcgtc 403  Q
    ||||||||| | | |||||||| |||||| |||||    
T  7877907 atttaatggggttgttcattggttggctttgcgtc 7877941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 564 - 642
Target Start/End: Complemental strand, 48156137 - 48156059
Alignment:
Q  564 tgaaagaatggaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 642  Q
    ||||||| | |||||||||||| |||| || |||||||||||||| ||||||| |||||||||||| ||| || |||||    
T  48156137 tgaaagagttgaaatatgggtgatgaacgaatacaaagtgcattcttcttggactaaaactcttgtccttcctattgat 48156059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 574 - 636
Target Start/End: Original strand, 48853044 - 48853106
Alignment:
Q  574 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttct 636  Q
    |||||||||||  ||||||| |||||||||| ||||||||||| ||| |||||||||||||||    
T  48853044 gaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttct 48853106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 574 - 632
Target Start/End: Complemental strand, 49038576 - 49038518
Alignment:
Q  574 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttct 632  Q
    |||||||||||| ||||||| |||||||| ||||||||||||| ||| |||||||||||    
T  49038576 gaaatatgggtgatgaaagaatacaaagttcattcgtcttggactaagactcttgttct 49038518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 574 - 627
Target Start/End: Complemental strand, 48147411 - 48147358
Alignment:
Q  574 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactctt 627  Q
    |||||||||||| ||||||| |||||||||||||||||||||| ||| ||||||    
T  48147411 gaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagactctt 48147358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 263 - 336
Target Start/End: Complemental strand, 49048581 - 49048508
Alignment:
Q  263 tttcgtcacatttggaggttttctcgtttccagataatacctggaaagaaattgatggtactcacatcgcttat 336  Q
    |||| |||||||||||| ||||||||||   ||||||||  |||||||||||||| |||||||||||| |||||    
T  49048581 tttcatcacatttggagtttttctcgttgagagataatatatggaaagaaattgagggtactcacatcccttat 49048508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 50669042 - 50669087
Alignment:
Q  195 tgataatctatatggttttggttatgaccagtcaagagatgattac 240  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||    
T  50669042 tgatcatctatatggttttggttatgaccggtcaagagatgattac 50669087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 268 - 327
Target Start/End: Original strand, 7786524 - 7786583
Alignment:
Q  268 tcacatttggaggttttctcgtttccagataatacctggaaagaaattgatggtactcac 327  Q
    ||||||||||||||||||||||||  ||| ||||| ||||||||||| || |||||||||    
T  7786524 tcacatttggaggttttctcgtttaaagacaatacttggaaagaaatcgagggtactcac 7786583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 574 - 633
Target Start/End: Original strand, 7786827 - 7786886
Alignment:
Q  574 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctt 633  Q
    |||||||||||| ||||||| ||||| |||||||  ||||||||||| ||||||||||||    
T  7786827 gaaatatgggtgatgaaagaatacaacgtgcatttatcttggaataagactcttgttctt 7786886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 37827073 - 37827034
Alignment:
Q  201 tctatatggttttggttatgaccagtcaagagatgattac 240  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  37827073 tctatatggttttggttatgaccagtctagagatgattac 37827034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 574 - 633
Target Start/End: Complemental strand, 45371772 - 45371713
Alignment:
Q  574 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctt 633  Q
    |||||||||||  ||||||| |||||||||||||||||||||| ||| ||| ||||||||    
T  45371772 gaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagacttttgttctt 45371713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 576 - 629
Target Start/End: Complemental strand, 7237439 - 7237386
Alignment:
Q  576 aatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgt 629  Q
    |||||||||| ||||||| |||||| ||||||||| ||||| ||||||||||||    
T  7237439 aatatgggtgatgaaagaatacaaaatgcattcgttttggactaaaactcttgt 7237386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 7908325 - 7908366
Alignment:
Q  208 ggttttggttatgaccagtcaagagatgattacgtgctggtt 249  Q
    ||||||||||||||||||||||||||||||||| || |||||    
T  7908325 ggttttggttatgaccagtcaagagatgattacttggtggtt 7908366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 642
Target Start/End: Complemental strand, 45384590 - 45384522
Alignment:
Q  574 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 642  Q
    |||||||||||| ||||||| || |||||||||||||||||||  || |||| ||||||| || |||||    
T  45384590 gaaatatgggtgatgaaagaatataaagtgcattcgtcttggacaaagactcgtgttcttccttttgat 45384522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 642
Target Start/End: Original strand, 48870923 - 48870991
Alignment:
Q  574 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 642  Q
    ||||| |||||| |||| || ||||||||| | ||||||||||  || |||||||||||||||||||||    
T  48870923 gaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgat 48870991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 642
Target Start/End: Original strand, 48876227 - 48876295
Alignment:
Q  574 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 642  Q
    ||||| |||||| |||| || ||||||||| | ||||||||||  || |||||||||||||||||||||    
T  48876227 gaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgat 48876295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 642
Target Start/End: Original strand, 48886609 - 48886677
Alignment:
Q  574 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 642  Q
    ||||| |||||| |||| || ||||||||| | ||||||||||  || |||||||||||||||||||||    
T  48886609 gaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgat 48886677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 622
Target Start/End: Original strand, 48903318 - 48903366
Alignment:
Q  574 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaa 622  Q
    |||||||||||| ||||||| ||||||||||||| |||||||| |||||    
T  48903318 gaaatatgggtgatgaaagaatacaaagtgcatttgtcttggactaaaa 48903366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 650
Target Start/End: Complemental strand, 49048253 - 49048177
Alignment:
Q  574 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgatttcattcc 650  Q
    |||||||||||| ||||||| || |||||||||||||| |||| ||| ||| ||||| |||||  |||| |||||||    
T  49048253 gaaatatgggtgatgaaagagtataaagtgcattcgtcatggactaagacttttgttttttctactgatgtcattcc 49048177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 578 - 630
Target Start/End: Original strand, 50666682 - 50666734
Alignment:
Q  578 tatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgtt 630  Q
    |||||||| || |||| |||||||||||||| ||||||| |||||||||||||    
T  50666682 tatgggtgatgtaagaatacaaagtgcattcatcttggactaaaactcttgtt 50666734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 268 - 327
Target Start/End: Original strand, 7765702 - 7765761
Alignment:
Q  268 tcacatttggaggttttctcgtttccagataatacctggaaagaaattgatggtactcac 327  Q
    |||||||||||| |||||||||||  ||| ||||| ||||||||||| || |||||||||    
T  7765702 tcacatttggagtttttctcgtttaaagacaatacttggaaagaaatcgagggtactcac 7765761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 574 - 633
Target Start/End: Original strand, 7766005 - 7766064
Alignment:
Q  574 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctt 633  Q
    |||||||||||| ||||||| ||||||||| ||||||| |||| ||| || |||||||||    
T  7766005 gaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttctt 7766064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 249
Target Start/End: Original strand, 7877727 - 7877770
Alignment:
Q  206 atggttttggttatgaccagtcaagagatgattacgtgctggtt 249  Q
    ||||||||||||||||||| ||||||||||||||| || |||||    
T  7877727 atggttttggttatgaccaatcaagagatgattacttggtggtt 7877770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 239
Target Start/End: Complemental strand, 50250870 - 50250831
Alignment:
Q  200 atctatatggttttggttatgaccagtcaagagatgatta 239  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  50250870 atctatatggttttggttatgaccactcaacagatgatta 50250831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 71 - 177
Target Start/End: Complemental strand, 37827212 - 37827106
Alignment:
Q  71 aaattatagggtcatgtggagggtttttatttttataccgttttccagacatttacctatggaatccatctactggatttaagaaacaaataccagtgtc 170  Q
    |||||| ||| ||| || |||||||| |||||||  |||||| |  | |||| ||| ||||||||||||| ||||||||| | |||||||||||  ||||    
T  37827212 aaattaaaggttcaggtagagggtttgtatttttgcaccgttctttaaacatctacatatggaatccatccactggatttcacaaacaaatacccttgtc 37827113  T
Q  171 ttctttt 177  Q
    | |||||    
T  37827112 tcctttt 37827106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 630
Target Start/End: Complemental strand, 37826681 - 37826632
Alignment:
Q  581 gggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgtt 630  Q
    ||||| ||||||| |||||| ||||||||||||||| ||| |||||||||    
T  37826681 gggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgtt 37826632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 577 - 642
Target Start/End: Original strand, 48863631 - 48863696
Alignment:
Q  577 atatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 642  Q
    ||||||||| || |||| |||  ||||||||| ||||||| |||||||||||| |||||| |||||    
T  48863631 atatgggtgatggaagaatacggagtgcattcatcttggattaaaactcttgtgctttctattgat 48863696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 370 - 442
Target Start/End: Original strand, 7765804 - 7765876
Alignment:
Q  370 tttaatggagctattcattggctggcttggcgtcaagatttagaattggatgttattattgtctttgatttaa 442  Q
    |||||||| |||||||||||| || ||| |||||| ||| |||  |||||||| ||| ||| |||||||||||    
T  7765804 tttaatggggctattcattggttgtcttcgcgtcatgatatagctttggatgtcattgttggctttgatttaa 7765876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 268 - 328
Target Start/End: Complemental strand, 37826997 - 37826937
Alignment:
Q  268 tcacatttggaggttttctcgtttccagataatacctggaaagaaattgatggtactcaca 328  Q
    |||||||||||| ||||||||||   ||||||| | |||| ||||||||| ||||||||||    
T  37826997 tcacatttggagtttttctcgttgaaagataattcatggagagaaattgagggtactcaca 37826937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 48170651 - 48170611
Alignment:
Q  200 atctatatggttttggttatgaccagtcaagagatgattac 240  Q
    |||||||||||||||| ||||| |||| |||||||||||||    
T  48170651 atctatatggttttgggtatgatcagttaagagatgattac 48170611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 48705524 - 48705484
Alignment:
Q  124 tacctatggaatccatctactggatttaagaaacaaatacc 164  Q
    ||||| ||||||||||||||||||||| | |||||||||||    
T  48705524 tacctgtggaatccatctactggatttcacaaacaaatacc 48705484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 574 - 630
Target Start/End: Original strand, 9120126 - 9120182
Alignment:
Q  574 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgtt 630  Q
    |||||||||||| ||||||| |||||||||||||| |||||||| ||||||||||||    
T  9120126 gaaatatgggtgatgaaagaatacaaagtgcattcctcttggaagaaaactcttgtt 9120182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 577 - 633
Target Start/End: Complemental strand, 42562028 - 42561972
Alignment:
Q  577 atatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctt 633  Q
    ||||||||| ||||||| |||||||||||||| ||||||| ||| | ||||||||||    
T  42562028 atatgggtgatgaaagaatacaaagtgcattcatcttggactaagattcttgttctt 42561972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 574 - 615
Target Start/End: Original strand, 179421 - 179462
Alignment:
Q  574 gaaatatgggtgttgaaagattacaaagtgcattcgtcttgg 615  Q
    |||||||||||| ||||||| |||||||||||||| ||||||    
T  179421 gaaatatgggtgatgaaagaatacaaagtgcattcatcttgg 179462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 200 - 259
Target Start/End: Original strand, 12200299 - 12200358
Alignment:
Q  200 atctatatggttttggttatgaccagtcaagagatgattacgtgctggttgtattttccc 259  Q
    |||||||||||||||||||||||| |||||||||||||||| || ||||| |||| ||||    
T  12200299 atctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtccc 12200358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 200 - 259
Target Start/End: Original strand, 12444727 - 12444786
Alignment:
Q  200 atctatatggttttggttatgaccagtcaagagatgattacgtgctggttgtattttccc 259  Q
    |||||||||||||||||||||||| |||||||||||||||| || ||||| |||| ||||    
T  12444727 atctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtccc 12444786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 453
Target Start/End: Complemental strand, 4962373 - 4962336
Alignment:
Q  416 tggatgttattattgtctttgatttaattaaaaggaaa 453  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  4962373 tggatgttattattgtctttgatttaatggaaaggaaa 4962336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 21979729 - 21979678
Alignment:
Q  198 taatctatatggttttggttatgaccagtcaagagatgattacgtgctggtt 249  Q
    |||||||||||||||||||||||||||||||||| |||||||| || |||||    
T  21979729 taatctatatggttttggttatgaccagtcaagaaatgattacttggtggtt 21979678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 575 - 633
Target Start/End: Complemental strand, 21979325 - 21979267
Alignment:
Q  575 aaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctt 633  Q
    ||||||||||| ||||||| |||||||||| ||| ||||||||||| |  |||||||||    
T  21979325 aaatatgggtgatgaaagaatacaaagtgcgttcctcttggaataagaaacttgttctt 21979267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 574 - 627
Target Start/End: Original strand, 21016184 - 21016237
Alignment:
Q  574 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactctt 627  Q
    |||||||||||  ||||||| |||||||| ||||||||||||| ||| ||||||    
T  21016184 gaaatatgggttatgaaagaatacaaagtacattcgtcttggactaagactctt 21016237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 326
Target Start/End: Complemental strand, 21979634 - 21979577
Alignment:
Q  269 cacatttggaggttttctcgtttccagataatacctggaaagaaattgatggtactca 326  Q
    ||||||||||||||||||| ||   |||||||||||||||| ||||||| ||| ||||    
T  21979634 cacatttggaggttttctctttgagagataatacctggaaacaaattgagggtgctca 21979577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 574 - 648
Target Start/End: Complemental strand, 11024201 - 11024127
Alignment:
Q  574 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgatttcatt 648  Q
    |||||||||||  ||||||| |||||||||||||||||||||| ||| |||||||| || ||| |||||| ||||    
T  11024201 gaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgtcctatctattgattacatt 11024127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 574 - 642
Target Start/End: Complemental strand, 11015189 - 11015121
Alignment:
Q  574 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 642  Q
    |||||||||||  ||||||| |||||||||||||||||||||  |||||||||||| || ||| |||||    
T  11015189 gaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgtcctatctattgat 11015121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 47452173 - 47452011
Alignment:
Q  23 cttcaccgaaccttaatttcttgcttcctaaatcttattttccttttgaaattatagggtcatgtggagggtttttatttttataccgttttccagacat 122  Q
    ||||||||||||||||||| ||||||||  ||||| | | |  | ||||||||| ||| |||||| |||||||| || |||||    ||| | || ||||    
T  47452173 cttcaccgaaccttaattttttgcttccccaatctgagtataatcttgaaattaaaggttcatgtagagggtttatacttttaagttgttcttcaaacat 47452074  T
Q  123 ttacctatggaatccatctactggatttaagaaacaaataccagtgtcttcttttgattccaa 185  Q
     ||| ||||||||||||| |||||| || | |||||||||||  || || |||||| ||||||    
T  47452073 ctacatatggaatccatccactggagttcacaaacaaatacctttgcctccttttggttccaa 47452011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 564 - 629
Target Start/End: Complemental strand, 11005636 - 11005571
Alignment:
Q  564 tgaaagaatggaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgt 629  Q
    ||||| ||| |||||||||||  ||||||| |||||||||||||||||||||| |||  |||||||    
T  11005636 tgaaacaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaaggctcttgt 11005571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 642
Target Start/End: Complemental strand, 47451598 - 47451530
Alignment:
Q  574 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 642  Q
    |||||||||||| ||||||| ||||||||  ||||||||||| | || |||||||||||| || |||||    
T  47451598 gaaatatgggtgatgaaagaatacaaagttaattcgtcttgggaaaagactcttgttcttcctattgat 47451530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 11006041 - 11006002
Alignment:
Q  201 tctatatggttttggttatgaccagtcaagagatgattac 240  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  11006041 tctatatggttttgggtatgaccattcaagagatgattac 11006002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 11024616 - 11024577
Alignment:
Q  201 tctatatggttttggttatgaccagtcaagagatgattac 240  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  11024616 tctatatggttttgggtatgaccattcaagagatgattac 11024577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 48883793 - 48883842
Alignment:
Q  200 atctatatggttttggttatgaccagtcaagagatgattacgtgctggtt 249  Q
    |||||||||||||||||||||||| |||||||||||||||| || |||||    
T  48883793 atctatatggttttggttatgacccgtcaagagatgattacatggtggtt 48883842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 574 - 633
Target Start/End: Original strand, 48884187 - 48884246
Alignment:
Q  574 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctt 633  Q
    ||||||| |||| ||||||| ||||||||||||  |||||||| ||| ||||||||||||    
T  48884187 gaaatataggtgatgaaagaatacaaagtgcatatgtcttggactaagactcttgttctt 48884246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 577 - 632
Target Start/End: Original strand, 24367531 - 24367586
Alignment:
Q  577 atatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttct 632  Q
    ||||||||  || |||| |||||||||||||||||||||| |||||||||||||||    
T  24367531 atatgggtaatggaagaatacaaagtgcattcgtcttggactaaaactcttgttct 24367586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 577 - 630
Target Start/End: Original strand, 24310582 - 24310635
Alignment:
Q  577 atatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgtt 630  Q
    ||||||||| ||||||| ||||||||||| || ||||||| |||||||||||||    
T  24310582 atatgggtgatgaaagaatacaaagtgcagtcttcttggagtaaaactcttgtt 24310635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 240
Target Start/End: Original strand, 24310168 - 24310203
Alignment:
Q  205 tatggttttggttatgaccagtcaagagatgattac 240  Q
    |||||||||||||||||| |||||||||||||||||    
T  24310168 tatggttttggttatgacgagtcaagagatgattac 24310203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 577 - 632
Target Start/End: Original strand, 24416144 - 24416199
Alignment:
Q  577 atatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttct 632  Q
    ||||||||| ||||||| ||||||| ||| || ||||||| |||||||||||||||    
T  24416144 atatgggtgatgaaagaatacaaagggcagtcatcttggactaaaactcttgttct 24416199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 580 - 633
Target Start/End: Original strand, 24323139 - 24323192
Alignment:
Q  580 tgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctt 633  Q
    |||||| ||||||| ||||||||||| || |||| || ||||||||||||||||    
T  24323139 tgggtgatgaaagaatacaaagtgcagtcatcttcgactaaaactcttgttctt 24323192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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