View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3786_low_5 (Length: 497)
Name: NF3786_low_5
Description: NF3786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3786_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 241 - 487
Target Start/End: Complemental strand, 48857153 - 48856908
Alignment:
| Q |
241 |
gcaagaaacagaccaacatttatttatttatagacacgacgacatgaaatgttgctgagccaaaacctcaacttctggccacgtcatgatatcaccggag |
340 |
Q |
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| T |
48857153 |
gcaagaaacagaccaac----gtttatttatagacacgacgacatgaaatgttgctgcgccaaaacctcaacttctggccacgtcatgatatcaccggag |
48857058 |
T |
|
| Q |
341 |
caactccacgacgaatcactctccatcagctccggcaattcaatctcaccccaaaaatcatcttcatcagacacaatgcaacccttctcatccaacgaag |
440 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48857057 |
caactccacgacgaatcactctccatcagctccggcaattcaatctcaccccaaaaatcatcttcatcagacacaatgcaacccttctcatccaacgaag |
48856958 |
T |
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| Q |
441 |
ccttcatcatact---cgccgccttagctgccgccgcctgaatgtctctg |
487 |
Q |
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| T |
48856957 |
ccttcatcatactcgccgccgccttagctgccgcagcctgaatgtctctg |
48856908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 48857369 - 48857234
Alignment:
| Q |
18 |
caaaccttcatagaagctgtccatgcttatttttagaaaaggaaagaaagnnnnnnnnncatgttcatattacgcattagttaaattaaggaaaatattg |
117 |
Q |
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| T |
48857369 |
caaaccttcatagaagctgtccatgcttatttttagaaaaggaaaaaaaaaa--------atgttcatattatgcattagttaaattaaggaaaatattg |
48857278 |
T |
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| Q |
118 |
taacttattagttacttaa--gggggagaaagaaaaagagtttt |
159 |
Q |
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| T |
48857277 |
taacttattagttacttaaaggggggagaaagaaaaagagtttt |
48857234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 402
Target Start/End: Original strand, 9776314 - 9776348
Alignment:
| Q |
368 |
agctccggcaattcaatctcaccccaaaaatcatc |
402 |
Q |
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| T |
9776314 |
agctccggcaactcaatctcaccccaaaaatcatc |
9776348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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