View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3787_high_11 (Length: 297)
Name: NF3787_high_11
Description: NF3787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3787_high_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 36733286 - 36733429
Alignment:
| Q |
11 |
cacagacattcggtgacattttatattcttcctagtttggaatcagtcatacgttttaagaatatgttgccgtccttggccttcctnnnnnnnnttgaga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36733286 |
cacagacattcggtgacattttatattcttcctagtttggaatcagtcatacgttttaagaatatgttgccgtccttggccttcctaaaaaaacttgaga |
36733385 |
T |
|
| Q |
111 |
gcaacacataatcgtccttttccaaatcaaataacgaatatgat |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36733386 |
gcaacacataatcgtccttttccaaatcaaataacgaatatgat |
36733429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 36733450 - 36733520
Alignment:
| Q |
219 |
agttttttccttcttatatac----gatacaattcagcagcgtaaccaacatattttcaattacttactac |
285 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36733450 |
agttttttccttcttatatacatacgatacaattcagcagcgtaaccaacatattttcaattacttactac |
36733520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 204
Target Start/End: Original strand, 36733417 - 36733450
Alignment:
| Q |
171 |
taacgaatatgatcaaacacaaactacaatataa |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
36733417 |
taacgaatatgatcaaacacaaactacaatataa |
36733450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University