View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3787_high_12 (Length: 289)

Name: NF3787_high_12
Description: NF3787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3787_high_12
NF3787_high_12
[»] chr5 (14 HSPs)
chr5 (62-279)||(37609609-37609822)
chr5 (169-279)||(38095856-38095966)
chr5 (108-165)||(38095512-38095569)
chr5 (108-162)||(16678766-16678820)
chr5 (108-147)||(32674956-32674995)
chr5 (108-152)||(38936314-38936358)
chr5 (108-160)||(12655265-12655317)
chr5 (108-160)||(20105095-20105147)
chr5 (108-160)||(23184050-23184102)
chr5 (108-160)||(23188317-23188369)
chr5 (108-160)||(30090355-30090407)
chr5 (108-160)||(34761311-34761363)
chr5 (108-160)||(39878145-39878197)
chr5 (108-160)||(3607940-3607992)
[»] chr6 (10 HSPs)
chr6 (169-279)||(25971385-25971495)
chr6 (169-279)||(25975825-25975935)
chr6 (108-164)||(25971041-25971097)
chr6 (108-164)||(25975481-25975537)
chr6 (169-266)||(2280602-2280699)
chr6 (108-160)||(2280988-2281040)
chr6 (108-160)||(33045782-33045834)
chr6 (108-147)||(29369514-29369553)
chr6 (108-147)||(29372069-29372108)
chr6 (108-147)||(33004773-33004812)
[»] chr3 (23 HSPs)
chr3 (169-279)||(18255890-18256000)
chr3 (108-168)||(18256284-18256344)
chr3 (168-266)||(38656267-38656365)
chr3 (169-266)||(52419139-52419236)
chr3 (169-241)||(36947501-36947573)
chr3 (176-266)||(31486894-31486984)
chr3 (108-160)||(18198762-18198814)
chr3 (108-147)||(854647-854686)
chr3 (108-147)||(26951579-26951618)
chr3 (111-150)||(36006254-36006293)
chr3 (108-147)||(36087591-36087630)
chr3 (108-147)||(38655924-38655963)
chr3 (108-147)||(49562410-49562449)
chr3 (108-160)||(4594171-4594223)
chr3 (108-160)||(16651479-16651531)
chr3 (108-160)||(26947907-26947959)
chr3 (108-160)||(36947158-36947210)
chr3 (108-147)||(11826548-11826587)
chr3 (108-147)||(36091429-36091468)
chr3 (120-151)||(53521078-53521109)
chr3 (107-160)||(12260886-12260939)
chr3 (108-160)||(13454884-13454936)
chr3 (119-147)||(52418807-52418835)
[»] chr1 (24 HSPs)
chr1 (169-279)||(37891880-37891990)
chr1 (169-279)||(23089620-23089730)
chr1 (169-266)||(29245111-29245208)
chr1 (169-266)||(48650675-48650772)
chr1 (108-168)||(37891536-37891596)
chr1 (169-266)||(50708532-50708629)
chr1 (169-266)||(13926643-13926740)
chr1 (120-164)||(23086208-23086252)
chr1 (108-160)||(45501289-45501341)
chr1 (108-147)||(2045250-2045289)
chr1 (104-146)||(21056874-21056916)
chr1 (108-160)||(7480558-7480610)
chr1 (108-160)||(9533934-9533986)
chr1 (108-160)||(13926303-13926355)
chr1 (111-159)||(26211701-26211749)
chr1 (108-160)||(29245500-29245552)
chr1 (108-160)||(38210995-38211047)
chr1 (108-160)||(39513257-39513309)
chr1 (108-160)||(48651064-48651116)
chr1 (108-160)||(49787358-49787410)
chr1 (108-160)||(50708921-50708973)
chr1 (108-147)||(42496655-42496694)
chr1 (108-147)||(45503534-45503573)
chr1 (108-147)||(48960785-48960824)
[»] chr4 (17 HSPs)
chr4 (169-279)||(36895997-36896107)
chr4 (111-168)||(36895658-36895715)
chr4 (169-266)||(16908722-16908819)
chr4 (169-266)||(21382307-21382404)
chr4 (169-266)||(28389060-28389157)
chr4 (169-266)||(29359548-29359645)
chr4 (108-152)||(26602412-26602456)
chr4 (108-152)||(8121111-8121155)
chr4 (108-147)||(16909115-16909154)
chr4 (109-160)||(28389449-28389500)
chr4 (108-147)||(30388031-30388070)
chr4 (108-147)||(52682792-52682831)
chr4 (108-160)||(21382696-21382748)
chr4 (108-147)||(29359215-29359254)
chr4 (108-147)||(31448460-31448499)
chr4 (108-147)||(42347798-42347837)
chr4 (107-147)||(41859873-41859913)
[»] scaffold1910 (1 HSPs)
scaffold1910 (169-279)||(991-1101)
[»] chr2 (20 HSPs)
chr2 (169-266)||(1512430-1512527)
chr2 (169-266)||(5013913-5014010)
chr2 (108-166)||(23455696-23455754)
chr2 (108-160)||(27997492-27997544)
chr2 (108-160)||(28098862-28098914)
chr2 (108-147)||(207806-207845)
chr2 (108-147)||(1512832-1512871)
chr2 (108-147)||(26455966-26456005)
chr2 (108-147)||(40605428-40605467)
chr2 (108-160)||(184179-184231)
chr2 (108-160)||(976085-976137)
chr2 (108-160)||(2449413-2449465)
chr2 (108-147)||(1916810-1916849)
chr2 (108-147)||(5013568-5013607)
chr2 (108-147)||(20890739-20890778)
chr2 (108-147)||(35432177-35432215)
chr2 (108-147)||(36437644-36437683)
chr2 (107-160)||(6123758-6123811)
chr2 (108-160)||(13905375-13905427)
chr2 (130-162)||(31226808-31226840)
[»] scaffold0097 (4 HSPs)
scaffold0097 (169-266)||(52262-52359)
scaffold0097 (108-147)||(49096-49135)
scaffold0097 (108-147)||(40446-40485)
scaffold0097 (108-147)||(51918-51957)
[»] chr8 (12 HSPs)
chr8 (169-266)||(19961285-19961382)
chr8 (169-266)||(23827425-23827522)
chr8 (108-147)||(23827818-23827857)
chr8 (108-160)||(19961674-19961726)
chr8 (107-147)||(24011856-24011896)
chr8 (108-147)||(14994481-14994520)
chr8 (169-204)||(37589302-37589337)
chr8 (108-147)||(37983448-37983487)
chr8 (108-146)||(18492360-18492398)
chr8 (108-160)||(406165-406217)
chr8 (108-140)||(18266003-18266035)
chr8 (108-140)||(18275016-18275048)
[»] chr7 (16 HSPs)
chr7 (169-266)||(45115486-45115583)
chr7 (170-266)||(26168500-26168596)
chr7 (130-168)||(35103013-35103051)
chr7 (108-160)||(29956522-29956574)
chr7 (108-160)||(46909393-46909445)
chr7 (108-147)||(7893815-7893854)
chr7 (108-147)||(22007038-22007077)
chr7 (108-147)||(26168902-26168941)
chr7 (108-147)||(32038501-32038540)
chr7 (108-147)||(32660282-32660321)
chr7 (108-160)||(7888912-7888964)
chr7 (108-160)||(45115875-45115927)
chr7 (108-147)||(13398415-13398454)
chr7 (107-160)||(16719945-16719998)
chr7 (108-160)||(27715989-27716041)
chr7 (108-144)||(31100199-31100235)
[»] scaffold0374 (1 HSPs)
scaffold0374 (108-160)||(2016-2068)
[»] scaffold0121 (1 HSPs)
scaffold0121 (108-147)||(45635-45674)
[»] scaffold0642 (1 HSPs)
scaffold0642 (108-160)||(3444-3496)
[»] scaffold0345 (1 HSPs)
scaffold0345 (108-160)||(13356-13408)
[»] scaffold0105 (1 HSPs)
scaffold0105 (108-160)||(25573-25625)


Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 62 - 279
Target Start/End: Complemental strand, 37609822 - 37609609
Alignment:
Q  62 caaaacaaagtgctacacatcattgtaacaaaacnnnnnnnngtgttacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatct 161  Q
    |||||||||||||||||||||||||||||||||         ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37609822 caaaacaaagtgctacacatcattgtaacaaaa----aaaaagtgttacacattacggaaaacttctctgtagaccacatttgatgtcacatcagtatct 37609727  T
Q  162 tggccgtaaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggtactcttac 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  37609726 tggccgtaaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcctcaataacatcacaggtactcctac 37609627  T
Q  262 tttcaatcgaatcctatg 279  Q
    ||||||||||||||||||    
T  37609626 tttcaatcgaatcctatg 37609609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 169 - 279
Target Start/End: Original strand, 38095856 - 38095966
Alignment:
Q  169 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggtactcttactttcaat 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||    
T  38095856 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctattgtcctcaataacatcacaggtactcctactttcaat 38095955  T
Q  269 cgaatcctatg 279  Q
    |||||||||||    
T  38095956 cgaatcctatg 38095966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 38095512 - 38095569
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatcttggc 165  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38095512 tacacattacggaaaacttctctgtagaccacatttgatgtcacatcagtatcttggc 38095569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 16678766 - 16678820
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatctt 162  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  16678766 tacacattacgaaaaacttctctgtagaccacatttgatgtcacatcagtatctt 16678820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 32674995 - 32674956
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32674995 tacacattatggaaaacttctctgtagaccacatttgatg 32674956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 38936314 - 38936358
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcaca 152  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||    
T  38936314 tacacattacggaaaacttctctatagaccacatttgatgtcaca 38936358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 12655317 - 12655265
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  12655317 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 12655265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 20105095 - 20105147
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  20105095 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 20105147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 23184102 - 23184050
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  23184102 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 23184050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 23188369 - 23188317
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  23188369 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 23188317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 30090355 - 30090407
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  30090355 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 30090407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 34761363 - 34761311
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  34761363 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 34761311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 39878197 - 39878145
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  39878197 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 39878145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 3607940 - 3607992
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| | ||||||||||||||||||||| ||||||  ||||| |||||    
T  3607940 tacacattacgaaaaacttctctgtagaccacacttgatgcaacatcggtatc 3607992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 7e-49; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 169 - 279
Target Start/End: Original strand, 25971385 - 25971495
Alignment:
Q  169 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggtactcttactttcaat 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||    
T  25971385 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctattgtcctcaataacatcacaggtactcctactttcaat 25971484  T
Q  269 cgaatcctatg 279  Q
    |||||||||||    
T  25971485 cgaatcctatg 25971495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 169 - 279
Target Start/End: Original strand, 25975825 - 25975935
Alignment:
Q  169 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggtactcttactttcaat 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||  |||||||||    
T  25975825 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctattgtcctcaataacatcacaggtactcccactttcaat 25975924  T
Q  269 cgaatcctatg 279  Q
    |||||||||||    
T  25975925 cgaatcctatg 25975935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 25971041 - 25971097
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatcttgg 164  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  25971041 tacacattacggaaaacttctctctagaccacatttgatgtcacatcagtatcttgg 25971097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 25975481 - 25975537
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatcttgg 164  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  25975481 tacacattacggaaaacttctctctagaccacatttgatgtcacatcagtatcttgg 25975537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 2280699 - 2280602
Alignment:
Q  169 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggtactcttactttca 266  Q
    |||||| || ||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||| || | | |||||| |||||| ||| ||||||||    
T  2280699 aaattttcctatctttgtaatgatcaatctcgtaccgttacataagcccaaactttgatccatgttcctgagtaacatgacaggtgctcctactttca 2280602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 2281040 - 2280988
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| ||||||||||||||||||||||||||||||  ||||| |||||    
T  2281040 tacacattacggaaaacttctctgtagaccacatttgatgcaacatcggtatc 2280988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 33045782 - 33045834
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  33045782 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 33045834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 29369514 - 29369553
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  29369514 tacacattacggaaaacttctttgtagaccacatttgatg 29369553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 29372069 - 29372108
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  29372069 tacacattacggaaaacttctttgtagaccacatttgatg 29372108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 33004773 - 33004812
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  33004773 tacacattacggaaaacttctttgtagaccacatttgatg 33004812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 7e-49; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 169 - 279
Target Start/End: Complemental strand, 18256000 - 18255890
Alignment:
Q  169 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggtactcttactttcaat 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||    
T  18256000 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctattgtcctcaataacatcacaggtactcctactttcaat 18255901  T
Q  269 cgaatcctatg 279  Q
    |||||||||||    
T  18255900 cgaatcctatg 18255890  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 18256344 - 18256284
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatcttggccgt 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18256344 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatcttggccgt 18256284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 168 - 266
Target Start/End: Original strand, 38656267 - 38656365
Alignment:
Q  168 taaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggtactcttactttca 266  Q
    ||||||| |||||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||| || | | |||||| |||||| ||| ||||||||    
T  38656267 taaattttcccatctttgtaatgatcaatctcgtaccgttacataagcccaaactttgatccatgttcctgagtaacatgacaggtgctcctactttca 38656365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 266
Target Start/End: Original strand, 52419139 - 52419236
Alignment:
Q  169 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggtactcttactttca 266  Q
    |||||| | ||| |||||||| |||||||| ||||||||||||||||||||| ||||||||||| || ||| |||||| |||||| ||| ||||||||    
T  52419139 aaattttctcatatttgtaatgatcaatctagtaccgttacataagcccaaactttgatctatgttcctcagtaacatgacaggtgctcatactttca 52419236  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 36947501 - 36947573
Alignment:
Q  169 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaat 241  Q
    |||||| |||||||||||||| |||||||| ||||||||| ||||||||||| ||||||||||| || |||||    
T  36947501 aaattttcccatctttgtaatgatcaatctcgtaccgttaaataagcccaaactttgatctatgttcctcaat 36947573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 266
Target Start/End: Complemental strand, 31486984 - 31486894
Alignment:
Q  176 cccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggtactcttactttca 266  Q
    |||||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||| || | | |||||| ||| || ||| ||||||||    
T  31486984 cccatctttgtaatgatcaatctcgtaccgttacataagcccaaactttgatccatgttcctgagtaacatgacacgtgctcctactttca 31486894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 18198814 - 18198762
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| ||||||||||||||||||||||||||||||  ||||| |||||    
T  18198814 tacacattacggaaaacttctctgtagaccacatttgatgcaacatcggtatc 18198762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 854686 - 854647
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  854686 tacacattacggaaaacttctctgtagaccacatttgatg 854647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 26951618 - 26951579
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  26951618 tacacattacggaaaacttctctgtagaccacatttgatg 26951579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 150
Target Start/End: Complemental strand, 36006293 - 36006254
Alignment:
Q  111 acattatggaaaacttctctgtagaccacatttgatgtca 150  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  36006293 acattacggaaaacttctctgtagaccacatttgatgtca 36006254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 36087591 - 36087630
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  36087591 tacacattacggaaaacttctctgtagaccacatttgatg 36087630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 38655924 - 38655963
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  38655924 tacacattacggaaaacttctctgtagaccacatttgatg 38655963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 49562410 - 49562449
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  49562410 tacacattacggaaaacttctctgtagaccacatttgatg 49562449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 4594223 - 4594171
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  4594223 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 4594171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 16651531 - 16651479
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  16651531 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 16651479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 26947959 - 26947907
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  26947959 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 26947907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 36947158 - 36947210
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| |||||| |||||||||||||||||||||||  ||||| |||||    
T  36947158 tacacattacggaaaaattctctgtagaccacatttgatgcaacatcggtatc 36947210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 11826587 - 11826548
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  11826587 tacacattacggaaaacttctttgtagaccacatttgatg 11826548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 36091429 - 36091468
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  36091429 tacacattacggaaaacttctttgtagaccacatttgatg 36091468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 151
Target Start/End: Original strand, 53521078 - 53521109
Alignment:
Q  120 aaaacttctctgtagaccacatttgatgtcac 151  Q
    ||||||||||||||||||||||||||||||||    
T  53521078 aaaacttctctgtagaccacatttgatgtcac 53521109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 12260939 - 12260886
Alignment:
Q  107 ttacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    |||||||||| |||||||||||||||||| |||| ||||||  ||||| |||||    
T  12260939 ttacacattacggaaaacttctctgtagatcacacttgatgcaacatcggtatc 12260886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 13454884 - 13454936
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| | ||||||||||||||||||||| ||||||  ||||| |||||    
T  13454884 tacacattacgaaaaacttctctgtagaccacacttgatgcaacatcggtatc 13454936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 147
Target Start/End: Original strand, 52418807 - 52418835
Alignment:
Q  119 gaaaacttctctgtagaccacatttgatg 147  Q
    |||||||||||||||||||||||||||||    
T  52418807 gaaaacttctctgtagaccacatttgatg 52418835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 7e-49; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 169 - 279
Target Start/End: Original strand, 37891880 - 37891990
Alignment:
Q  169 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggtactcttactttcaat 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||    
T  37891880 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctattgtcctcaataacatcacaggtactcctactttcaat 37891979  T
Q  269 cgaatcctatg 279  Q
    |||||||||||    
T  37891980 cgaatcctatg 37891990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 169 - 279
Target Start/End: Original strand, 23089620 - 23089730
Alignment:
Q  169 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggtactcttactttcaat 268  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  23089620 aaatttacccatctttgtaataatcaatcttgtactgttacataagcccaaattttgatctatggtcctcaataacatcacaggtactcctactttcaat 23089719  T
Q  269 cgaatcctatg 279  Q
    | |||||||||    
T  23089720 ctaatcctatg 23089730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 29245208 - 29245111
Alignment:
Q  169 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggtactcttactttca 266  Q
    |||||| | |||||||||||| |||||||| ||||||||||||||||||||| ||||||||||| || ||| |||||| ||| || ||| ||||||||    
T  29245208 aaattttctcatctttgtaatgatcaatctcgtaccgttacataagcccaaaatttgatctatgttcctcagtaacatgacacgtgctcctactttca 29245111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 48650772 - 48650675
Alignment:
Q  169 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggtactcttactttca 266  Q
    |||||| |||||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||| || | | |||||| |||||| ||| ||||||||    
T  48650772 aaattttcccatctttgtaatgatcaatctcgtaccgttacataagcccaaactttgatccatgttcctgagtaacatgacaggtgctcctactttca 48650675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 37891536 - 37891596
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatcttggccgt 168  Q
    ||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37891536 tacacattgcggaaaacttctttgtagaccacatttgatgtcacatcagtatcttggccgt 37891596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 50708629 - 50708532
Alignment:
Q  169 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggtactcttactttca 266  Q
    |||||| | |||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||| || | | |||||| |||||| ||| ||||||||    
T  50708629 aaattttcacatctttgtaatgatcaatctcgtaccgttacataagcccaaactttgatccatgttcctgagtaacatgacaggtgctcctactttca 50708532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 169 - 266
Target Start/End: Original strand, 13926643 - 13926740
Alignment:
Q  169 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggtactcttactttca 266  Q
    |||||| |||||||||||||| ||||||||  |||| ||||||||||||||| ||||||| ||| || | | |||||| |||||| ||| ||||||||    
T  13926643 aaattttcccatctttgtaatgatcaatctcctaccattacataagcccaaactttgatccatgttcctgagtaacatgacaggtgctcctactttca 13926740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 23086208 - 23086252
Alignment:
Q  120 aaaacttctctgtagaccacatttgatgtcacatcagtatcttgg 164  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  23086208 aaaacttctctgtaaaccacatttgatgtcacatcagtatcttgg 23086252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 45501289 - 45501341
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| ||||||||||||||||||||||||||||||  ||||| |||||    
T  45501289 tacacattacggaaaacttctctgtagaccacatttgatgcaacatcggtatc 45501341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 2045250 - 2045289
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  2045250 tacacattacggaaaacttctctgtagaccacatttgatg 2045289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 21056916 - 21056874
Alignment:
Q  104 gtgttacacattatggaaaacttctctgtagaccacatttgat 146  Q
    ||||||||||||| |||||||||||||||||| ||||||||||    
T  21056916 gtgttacacattacggaaaacttctctgtagagcacatttgat 21056874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 7480610 - 7480558
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  7480610 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 7480558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 9533986 - 9533934
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  9533986 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 9533934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 13926303 - 13926355
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| ||||||||||| ||||||||||||||||||  ||||| |||||    
T  13926303 tacacattacggaaaacttctttgtagaccacatttgatgcaacatcggtatc 13926355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 26211749 - 26211701
Alignment:
Q  111 acattatggaaaacttctctgtagaccacatttgatgtcacatcagtat 159  Q
    |||||| ||||||||||| ||||||||||||||||||  ||||||||||    
T  26211749 acattacggaaaacttctttgtagaccacatttgatgcaacatcagtat 26211701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 29245552 - 29245500
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| |||||||||||||||||| |||||||||||  ||||| |||||    
T  29245552 tacacattacggaaaacttctctgtagatcacatttgatgcaacatcggtatc 29245500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 38210995 - 38211047
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| ||||||||||| ||||||||||||||||||  ||||| |||||    
T  38210995 tacacattacggaaaacttctttgtagaccacatttgatgcaacatcggtatc 38211047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 39513257 - 39513309
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| ||||||||| ||||||||||||||||||||  ||||| |||||    
T  39513257 tacacattacggaaaacttatctgtagaccacatttgatgcaacatcggtatc 39513309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 48651116 - 48651064
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| ||||||||||||| ||||||||||||||||  ||||| |||||    
T  48651116 tacacattacggaaaacttctctatagaccacatttgatgcaacatcggtatc 48651064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 49787358 - 49787410
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  49787358 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 49787410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 50708973 - 50708921
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    |||||||||  |||||||||||||||||||||||||||||  ||||| |||||    
T  50708973 tacacattacagaaaacttctctgtagaccacatttgatgcaacatcggtatc 50708921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 42496694 - 42496655
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  42496694 tacacattacggaaaacttctctgtagaccacacttgatg 42496655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 45503534 - 45503573
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  45503534 tacacattacggaaaacttctccgtagaccacatttgatg 45503573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 48960824 - 48960785
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  48960824 tacacattacggaaaacttctttgtagaccacatttgatg 48960785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 169 - 279
Target Start/End: Original strand, 36895997 - 36896107
Alignment:
Q  169 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggtactcttactttcaat 268  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||    
T  36895997 aaatttacccatctttgtaataatcaatcttgtattgttacataagcccaaattttgatctatggtcctcaataacatcacatgtactcctactttcaat 36896096  T
Q  269 cgaatcctatg 279  Q
    |||||||||||    
T  36896097 cgaatcctatg 36896107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 36895658 - 36895715
Alignment:
Q  111 acattatggaaaacttctctgtagaccacatttgatgtcacatcagtatcttggccgt 168  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36895658 acattacggaaaacttctctgtagaccacatttgatgtcatatcagtatcttggccgt 36895715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 16908819 - 16908722
Alignment:
Q  169 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggtactcttactttca 266  Q
    |||||| || ||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||| || | | |||||| |||||| ||| ||||||||    
T  16908819 aaattttcctatctttgtaatgatcaatctcgtaccgttacataagcccaaactttgatccatgttcctgagtaacatgacaggtgctcctactttca 16908722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 21382404 - 21382307
Alignment:
Q  169 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggtactcttactttca 266  Q
    |||||| |||||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||| || | | |||||| ||| || ||| ||||||||    
T  21382404 aaattttcccatctttgtaatgatcaatctcgtaccgttacataagcccaaactttgatccatgttcctaagtaacatgacacgtgctcctactttca 21382307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 28389157 - 28389060
Alignment:
Q  169 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggtactcttactttca 266  Q
    |||||| || ||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||| || | | |||||| |||||| ||| ||||||||    
T  28389157 aaattttcctatctttgtaatgatcaatctcgtaccgttacataagcccaaactttgatccatgttcctgagtaacatgacaggtgctcctactttca 28389060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 266
Target Start/End: Original strand, 29359548 - 29359645
Alignment:
Q  169 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggtactcttactttca 266  Q
    |||||| |||||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||| || | | |||||| |||| | ||| ||||||||    
T  29359548 aaattttcccatctttgtaatgatcaatctcgtaccgttacataagcccaaactttgatccatgttcctgagtaacatgacagatgctcctactttca 29359645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 26602412 - 26602456
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcaca 152  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  26602412 tacacattatagaaaacttctctgtagaccacatttgatgtcaca 26602456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 8121155 - 8121111
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcaca 152  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||    
T  8121155 tacacattacggaaaacttctctgtagaccatatttgatgtcaca 8121111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 16909154 - 16909115
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  16909154 tacacattacggaaaacttctctgtagaccacatttgatg 16909115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 160
Target Start/End: Complemental strand, 28389500 - 28389449
Alignment:
Q  109 acacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    |||||||| ||||||||||||||||||||||||||||||  ||||| |||||    
T  28389500 acacattacggaaaacttctctgtagaccacatttgatgcaacatcggtatc 28389449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 30388031 - 30388070
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  30388031 tacacattacggaaaacttctctgtagaccacatttgatg 30388070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 52682831 - 52682792
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  52682831 tacacattacggaaaacttctctgtagaccacatttgatg 52682792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 21382748 - 21382696
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| ||||||||||||| ||||||||||||||||  ||||| |||||    
T  21382748 tacacattacggaaaacttctctatagaccacatttgatgcaacatcggtatc 21382696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 29359215 - 29359254
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  29359215 tacacattacggaaaacttctttgtagaccacatttgatg 29359254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 31448460 - 31448499
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  31448460 tacacattacggaaaacttctttgtagaccacatttgatg 31448499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 42347837 - 42347798
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  42347837 tacacattacggaaaacttctttgtagaccacatttgatg 42347798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 41859873 - 41859913
Alignment:
Q  107 ttacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    |||||||||| | |||||||| |||||||||||||||||||    
T  41859873 ttacacattacgaaaaacttcactgtagaccacatttgatg 41859913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1910 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold1910
Description:

Target: scaffold1910; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 169 - 279
Target Start/End: Original strand, 991 - 1101
Alignment:
Q  169 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggtactcttactttcaat 268  Q
    |||||||||||| ||||||| |||||| ||||||  ||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||    
T  991 aaatttacccatatttgtaaaaatcaaacttgtattgttacataagcccaaattttgatctatggtcctcaataacatcacaagtactcctactttcaat 1090  T
Q  269 cgaatcctatg 279  Q
    |||||||||||    
T  1091 cgaatcctatg 1101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 1512527 - 1512430
Alignment:
Q  169 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggtactcttactttca 266  Q
    |||||| |||||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||| || | | |||||| |||||| ||| ||||||||    
T  1512527 aaattttcccatctttgtaatgatcaatctcgtaccgttacataagcccaaactttgatccatgttcctgagtaacatgacaggtgctcctactttca 1512430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 266
Target Start/End: Original strand, 5013913 - 5014010
Alignment:
Q  169 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggtactcttactttca 266  Q
    |||||| |||||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||| || | | |||||| |||||| ||| ||||||||    
T  5013913 aaattttcccatctttgtaattatcaatctcgtaccgttacataagcccaaactttgatccatgttcctgagtaacatgacaggtgctcctactttca 5014010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 23455696 - 23455754
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatcttggcc 166  Q
    ||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  23455696 tacacattacggaaaaattctctgtagactacatttgatgtcacatcagtatcttggcc 23455754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 27997492 - 27997544
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| ||||||||||||||||||||||||||||||  ||||| |||||    
T  27997492 tacacattacggaaaacttctctgtagaccacatttgatgctacatcggtatc 27997544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 28098862 - 28098914
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| ||||||||||||||||||||||||||||||  ||||| |||||    
T  28098862 tacacattacggaaaacttctctgtagaccacatttgatgctacatcggtatc 28098914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 207845 - 207806
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  207845 tacacattacggaaaacttctctgtagaccacatttgatg 207806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 1512871 - 1512832
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  1512871 tacacattacggaaaacttctctgtagaccacatttgatg 1512832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 26456005 - 26455966
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  26456005 tacacattacggaaaacttctctgtagaccacatttgatg 26455966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 40605467 - 40605428
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  40605467 tacacattacggaaaacttctctgtagaccacatttgatg 40605428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 184231 - 184179
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  184231 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 184179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 976085 - 976137
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  976085 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 976137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 2449465 - 2449413
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  2449465 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 2449413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 1916810 - 1916849
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    |||| |||||||||||||||| ||||||||||||||||||    
T  1916810 tacatattatggaaaacttctatgtagaccacatttgatg 1916849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 5013568 - 5013607
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| | ||||||||||||||||||||||||||||    
T  5013568 tacacattacgaaaaacttctctgtagaccacatttgatg 5013607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 20890778 - 20890739
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  20890778 tacacattacggaaaacttctttgtagaccacatttgatg 20890739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 35432177 - 35432215
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  35432177 tacacattatggaaaacttctctgtag-ccacatttgatg 35432215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 36437644 - 36437683
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  36437644 tacacattacggaaaacttctttgtagaccacatttgatg 36437683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 6123811 - 6123758
Alignment:
Q  107 ttacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    |||||||||| |||||||||||||||||| |||| ||||||  ||||| |||||    
T  6123811 ttacacattacggaaaacttctctgtagatcacacttgatgcaacatcggtatc 6123758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 13905427 - 13905375
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    |||| |||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  13905427 tacatattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 13905375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 31226840 - 31226808
Alignment:
Q  130 tgtagaccacatttgatgtcacatcagtatctt 162  Q
    |||||||||||||||||||||||| ||||||||    
T  31226840 tgtagaccacatttgatgtcacattagtatctt 31226808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 266
Target Start/End: Original strand, 52262 - 52359
Alignment:
Q  169 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggtactcttactttca 266  Q
    |||||| |||||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||| || | | |||||| ||| || ||| ||||||||    
T  52262 aaattttcccatctttgtaatgatcaatctcgtaccgttacataagcccaaactttgatccatgttcctgagtaacatgacacgtgctcctactttca 52359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 49096 - 49135
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  49096 tacacattacggaaaacttctctgtagaccacatttgatg 49135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 40446 - 40485
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  40446 tacacattacggaaaacttctctgtagaccacacttgatg 40485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 51918 - 51957
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||||| ||||||||||||||||    
T  51918 tacacattacggaaaacttctctatagaccacatttgatg 51957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 19961382 - 19961285
Alignment:
Q  169 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggtactcttactttca 266  Q
    |||||| | |||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||| || | | |||||| |||||| ||| ||||||||    
T  19961382 aaattttctcatctttgtaatgatcaatctcgtaccgttacataagcccaaactttgatccatgttcctgagtaacatgacaggtgctcctactttca 19961285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 23827522 - 23827425
Alignment:
Q  169 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggtactcttactttca 266  Q
    |||||| || ||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||| || | | |||||| |||||| ||| ||||||||    
T  23827522 aaattttcctatctttgtaatgatcaatctcgtaccgttacataagcccaaactttgatccatgttcctgagtaacatgacaggtgctcctactttca 23827425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 23827857 - 23827818
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  23827857 tacacattacggaaaacttctctgtagaccacatttgatg 23827818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 19961726 - 19961674
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    |||||||||  |||||||||||||||||||||||||||||  ||||| |||||    
T  19961726 tacacattacagaaaacttctctgtagaccacatttgatgcaacatcggtatc 19961674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 24011856 - 24011896
Alignment:
Q  107 ttacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  24011856 ttacacattacggaaaacttctttgtagaccacatttgatg 24011896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 14994481 - 14994520
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||||||||||||| ||||||||    
T  14994481 tacacattacggaaaacttctctgtagaccatatttgatg 14994520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 204
Target Start/End: Complemental strand, 37589337 - 37589302
Alignment:
Q  169 aaatttacccatctttgtaataatcaatcttgtacc 204  Q
    |||||||||||||||| |||||||||||||||||||    
T  37589337 aaatttacccatctttataataatcaatcttgtacc 37589302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 37983448 - 37983487
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  37983448 tacacattacggaaaacttctttgtagaccacatttgatg 37983487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 18492398 - 18492360
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgat 146  Q
    ||||||||| ||||||||||| |||||||||||||||||    
T  18492398 tacacattacggaaaacttctttgtagaccacatttgat 18492360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 406165 - 406217
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| |||||||||||||||||| |||| ||||||  ||||| |||||    
T  406165 tacacattacggaaaacttctctgtagatcacacttgatgcaacatcggtatc 406217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 140
Target Start/End: Original strand, 18266003 - 18266035
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccaca 140  Q
    ||||||||| |||||||||||||||||||||||    
T  18266003 tacacattacggaaaacttctctgtagaccaca 18266035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 140
Target Start/End: Original strand, 18275016 - 18275048
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccaca 140  Q
    ||||||||| |||||||||||||||||||||||    
T  18275016 tacacattacggaaaacttctctgtagaccaca 18275048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 45115583 - 45115486
Alignment:
Q  169 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggtactcttactttca 266  Q
    |||||| |||||||||||||| |||||||| ||||||||||||||||| ||| ||||||| ||| || | | |||||| |||||| ||| ||||||||    
T  45115583 aaattttcccatctttgtaatgatcaatctcgtaccgttacataagcctaaactttgatccatgttcctgagtaacatgacaggtgctcctactttca 45115486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 266
Target Start/End: Complemental strand, 26168596 - 26168500
Alignment:
Q  170 aatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggtactcttactttca 266  Q
    ||||| |||||||||||||| |||||||| ||||| ||||||||||||||| ||||||| ||| || | | |||||| |||||| ||| ||||||||    
T  26168596 aattttcccatctttgtaatgatcaatctcgtaccattacataagcccaaactttgatccatgttcctgagtaacatgacaggtgctcctactttca 26168500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 35103051 - 35103013
Alignment:
Q  130 tgtagaccacatttgatgtcacatcagtatcttggccgt 168  Q
    |||||||||||||||||||||||||||||||||||||||    
T  35103051 tgtagaccacatttgatgtcacatcagtatcttggccgt 35103013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 29956574 - 29956522
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| ||||||||||||||||||||||||||||||  ||||| |||||    
T  29956574 tacacattacggaaaacttctctgtagaccacatttgatgcaacatcggtatc 29956522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 46909445 - 46909393
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||||||||||||||| ||||||||||||||||||  ||||| |||||    
T  46909445 tacacattatggaaaacttctatgtagaccacatttgatgcaacatcggtatc 46909393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 7893854 - 7893815
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  7893854 tacacattacggaaaacttctctgtagaccacatttgatg 7893815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 22007077 - 22007038
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  22007077 tacacattacggaaaacttctctgtagaccacatttgatg 22007038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 26168941 - 26168902
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  26168941 tacacattacggaaaacttctctgtagaccacatttgatg 26168902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 32038540 - 32038501
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  32038540 tacacattacggaaaacttctctgtagaccacatttgatg 32038501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 32660321 - 32660282
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  32660321 tacacattacggaaaacttctctgtagaccacatttgatg 32660282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 7888964 - 7888912
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  7888964 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 7888912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 45115927 - 45115875
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| ||||||||||||| ||||||||||||||||  ||||| |||||    
T  45115927 tacacattacggaaaacttctctatagaccacatttgatgcaacatcggtatc 45115875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 13398415 - 13398454
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  13398415 tacacattacggaaaacttctttgtagaccacatttgatg 13398454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 16719998 - 16719945
Alignment:
Q  107 ttacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    |||||||||| |||||||||||||||||| |||| ||||||  ||||| |||||    
T  16719998 ttacacattacggaaaacttctctgtagatcacacttgatgcaacatcggtatc 16719945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 27716041 - 27715989
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| |||||||||||||||||| |||| ||||||  ||||| |||||    
T  27716041 tacacattacggaaaacttctctgtagatcacacttgatgcaacatcggtatc 27715989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 31100235 - 31100199
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttg 144  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  31100235 tacacattacggaaaacttatctgtagaccacatttg 31100199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0374 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0374
Description:

Target: scaffold0374; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 2068 - 2016
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| ||||||||||||||||||||||||||||||  ||||| |||||    
T  2068 tacacattacggaaaacttctctgtagaccacatttgatgcaacatcggtatc 2016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 45674 - 45635
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatg 147  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  45674 tacacattacggaaaacttctctgtagaccacatttgatg 45635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0642 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 3496 - 3444
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| |||||||||||||||||| |||| ||||||  ||||| |||||    
T  3496 tacacattacggaaaacttctctgtagatcacacttgatgcaacatcggtatc 3444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 13408 - 13356
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
    ||||||||| |||||||||||||||||| |||| ||||||  ||||| |||||    
T  13408 tacacattacggaaaacttctctgtagatcacacttgatgcaacatcggtatc 13356  T

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Target: scaffold0105 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 25573 - 25625
Alignment:
Q  108 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 160  Q
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T  25573 tacacattacggaaaacttctctgtagatcacacttgatgcaacatcggtatc 25625  T

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