View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3787_high_2 (Length: 571)

Name: NF3787_high_2
Description: NF3787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3787_high_2
NF3787_high_2
[»] chr7 (29 HSPs)
chr7 (28-313)||(35465228-35465515)
chr7 (331-485)||(35465037-35465192)
chr7 (487-553)||(11686324-11686390)
chr7 (484-554)||(12218435-12218505)
chr7 (486-554)||(24438594-24438663)
chr7 (486-554)||(29993487-29993556)
chr7 (510-555)||(4628682-4628727)
chr7 (485-554)||(42044293-42044362)
chr7 (485-554)||(47083172-47083241)
chr7 (511-554)||(13064902-13064945)
chr7 (485-554)||(34606378-34606448)
chr7 (486-554)||(525076-525144)
chr7 (509-554)||(24798427-24798472)
chr7 (509-554)||(45045887-45045932)
chr7 (494-552)||(23357718-23357777)
chr7 (484-554)||(34333400-34333471)
chr7 (510-553)||(47657096-47657139)
chr7 (484-553)||(18117261-18117330)
chr7 (485-554)||(18486078-18486148)
chr7 (509-554)||(7689224-7689269)
chr7 (482-554)||(38128409-38128482)
chr7 (509-554)||(47839609-47839654)
chr7 (517-553)||(5239403-5239439)
chr7 (487-554)||(5729463-5729531)
chr7 (515-554)||(28588026-28588065)
chr7 (510-553)||(33636570-33636613)
chr7 (485-554)||(23363166-23363236)
chr7 (485-554)||(46716755-46716825)
chr7 (517-553)||(8754617-8754653)
[»] chr8 (33 HSPs)
chr8 (485-554)||(27988499-27988568)
chr8 (485-554)||(28045801-28045870)
chr8 (478-554)||(2805252-2805329)
chr8 (485-554)||(9063051-9063121)
chr8 (486-554)||(34228799-34228868)
chr8 (486-553)||(9537824-9537892)
chr8 (484-554)||(4537742-4537813)
chr8 (481-554)||(42034976-42035050)
chr8 (484-554)||(13643128-13643199)
chr8 (484-554)||(13743553-13743624)
chr8 (494-554)||(21595963-21596024)
chr8 (483-554)||(29444137-29444209)
chr8 (487-554)||(30675574-30675641)
chr8 (485-554)||(168583-168653)
chr8 (486-554)||(7304518-7304587)
chr8 (486-554)||(20831553-20831622)
chr8 (513-549)||(4648316-4648352)
chr8 (499-554)||(37373322-37373378)
chr8 (484-554)||(32114026-32114097)
chr8 (509-554)||(3930257-3930302)
chr8 (486-554)||(16394061-16394130)
chr8 (486-554)||(16888544-16888613)
chr8 (509-554)||(33357153-33357198)
chr8 (495-554)||(12203971-12204031)
chr8 (495-554)||(12448399-12448459)
chr8 (510-554)||(16890505-16890549)
chr8 (489-553)||(28626886-28626950)
chr8 (494-554)||(36730561-36730621)
chr8 (486-554)||(43119334-43119402)
chr8 (488-554)||(39406959-39407024)
chr8 (525-554)||(10870469-10870498)
chr8 (509-554)||(11112756-11112801)
chr8 (484-554)||(22956822-22956894)
[»] chr2 (26 HSPs)
chr2 (481-554)||(34442528-34442601)
chr2 (484-554)||(20553048-20553119)
chr2 (484-554)||(31438763-31438834)
chr2 (486-554)||(30486327-30486396)
chr2 (475-554)||(22068309-22068389)
chr2 (487-553)||(13574031-13574097)
chr2 (509-554)||(6580306-6580351)
chr2 (486-554)||(32360869-32360938)
chr2 (510-554)||(26387089-26387133)
chr2 (494-554)||(38590883-38590943)
chr2 (476-554)||(4022469-4022548)
chr2 (484-554)||(4381912-4381983)
chr2 (484-554)||(27856394-27856465)
chr2 (483-553)||(28601084-28601155)
chr2 (509-554)||(1859279-1859324)
chr2 (494-554)||(25782841-25782902)
chr2 (486-554)||(31390129-31390198)
chr2 (509-554)||(44588019-44588064)
chr2 (484-554)||(22567719-22567790)
chr2 (511-554)||(22887867-22887910)
chr2 (484-554)||(3668111-3668182)
chr2 (487-554)||(27584855-27584922)
chr2 (510-553)||(35851776-35851819)
chr2 (481-554)||(8969402-8969476)
chr2 (482-522)||(2472761-2472801)
chr2 (483-546)||(32860226-32860290)
[»] chr6 (25 HSPs)
chr6 (491-554)||(11115103-11115166)
chr6 (484-554)||(13416958-13417028)
chr6 (494-554)||(2350769-2350830)
chr6 (484-553)||(29978350-29978419)
chr6 (484-554)||(32929506-32929577)
chr6 (475-554)||(23402255-23402335)
chr6 (484-554)||(392213-392284)
chr6 (485-553)||(12525837-12525906)
chr6 (478-554)||(32985185-32985262)
chr6 (484-554)||(1840245-1840316)
chr6 (484-554)||(4215812-4215883)
chr6 (484-554)||(26467122-26467193)
chr6 (484-554)||(28225337-28225408)
chr6 (495-554)||(35044006-35044065)
chr6 (485-554)||(2581069-2581139)
chr6 (494-554)||(7851167-7851228)
chr6 (486-554)||(12145117-12145186)
chr6 (486-554)||(1391178-1391247)
chr6 (484-554)||(25165411-25165482)
chr6 (509-554)||(3515883-3515928)
chr6 (509-554)||(5323517-5323562)
chr6 (509-554)||(29451139-29451184)
chr6 (486-554)||(34851849-34851918)
chr6 (484-554)||(27433609-27433680)
chr6 (486-531)||(31280456-31280501)
[»] chr4 (34 HSPs)
chr4 (483-554)||(43202381-43202452)
chr4 (484-554)||(50619203-50619273)
chr4 (485-554)||(16820969-16821039)
chr4 (485-554)||(33108672-33108742)
chr4 (494-554)||(789538-789599)
chr4 (486-554)||(6164210-6164279)
chr4 (481-553)||(32217162-32217235)
chr4 (486-554)||(54897425-54897494)
chr4 (486-553)||(4268822-4268890)
chr4 (494-554)||(43944624-43944684)
chr4 (484-554)||(29591306-29591377)
chr4 (484-554)||(36395216-36395287)
chr4 (484-553)||(31517284-31517353)
chr4 (486-554)||(5091612-5091679)
chr4 (482-545)||(53003952-53004016)
chr4 (484-554)||(16536165-16536236)
chr4 (477-554)||(12356361-12356439)
chr4 (485-554)||(28119905-28119975)
chr4 (485-554)||(30387133-30387203)
chr4 (484-553)||(50603346-50603416)
chr4 (509-554)||(4089259-4089304)
chr4 (518-554)||(3783534-3783570)
chr4 (483-554)||(7769055-7769127)
chr4 (484-554)||(18067877-18067948)
chr4 (484-554)||(37988052-37988123)
chr4 (486-553)||(39877247-39877317)
chr4 (495-553)||(53655887-53655946)
chr4 (484-554)||(55882800-55882870)
chr4 (516-554)||(52533816-52533854)
chr4 (488-554)||(54655879-54655945)
chr4 (517-554)||(19503137-19503174)
chr4 (478-554)||(37402751-37402827)
chr4 (512-553)||(46149057-46149098)
chr4 (486-553)||(54945780-54945846)
[»] chr1 (39 HSPs)
chr1 (484-554)||(5694438-5694509)
chr1 (484-554)||(15227856-15227927)
chr1 (485-554)||(19031814-19031884)
chr1 (481-553)||(30294376-30294449)
chr1 (486-554)||(19010687-19010756)
chr1 (484-554)||(29657888-29657959)
chr1 (484-554)||(51065746-51065817)
chr1 (484-553)||(50128170-50128240)
chr1 (487-554)||(38162967-38163035)
chr1 (483-554)||(45431395-45431467)
chr1 (483-554)||(47010110-47010182)
chr1 (484-554)||(3097776-3097844)
chr1 (483-554)||(14350276-14350346)
chr1 (484-554)||(18043279-18043350)
chr1 (485-554)||(12072061-12072131)
chr1 (513-553)||(6770455-6770495)
chr1 (510-554)||(48383136-48383180)
chr1 (511-554)||(12307034-12307077)
chr1 (486-552)||(30657721-30657788)
chr1 (484-554)||(42769988-42770059)
chr1 (485-554)||(3784712-3784782)
chr1 (486-554)||(9266728-9266797)
chr1 (509-554)||(24178487-24178532)
chr1 (509-554)||(41730425-41730470)
chr1 (509-554)||(45449268-45449313)
chr1 (494-554)||(47532679-47532740)
chr1 (486-554)||(30217879-30217946)
chr1 (510-554)||(51368810-51368854)
chr1 (483-554)||(38701934-38702002)
chr1 (511-553)||(13961329-13961371)
chr1 (484-549)||(26228300-26228366)
chr1 (512-554)||(36446352-36446394)
chr1 (512-554)||(43286839-43286881)
chr1 (483-554)||(17333281-17333351)
chr1 (485-542)||(28481973-28482029)
chr1 (494-554)||(28725913-28725974)
chr1 (512-553)||(29683314-29683355)
chr1 (509-554)||(35985645-35985690)
chr1 (485-536)||(29210529-29210581)
[»] chr5 (19 HSPs)
chr5 (485-554)||(34650832-34650902)
chr5 (485-554)||(13661925-13661995)
chr5 (484-554)||(35504239-35504309)
chr5 (476-554)||(8787456-8787535)
chr5 (484-554)||(11957965-11958036)
chr5 (482-552)||(35132640-35132711)
chr5 (513-554)||(10956068-10956109)
chr5 (494-554)||(20175344-20175404)
chr5 (509-554)||(6283679-6283724)
chr5 (509-554)||(11846189-11846234)
chr5 (486-545)||(21547394-21547454)
chr5 (483-553)||(40564401-40564472)
chr5 (513-547)||(2619596-2619630)
chr5 (509-543)||(10955975-10956009)
chr5 (509-554)||(10054377-10054422)
chr5 (509-554)||(12506413-12506458)
chr5 (486-554)||(40057424-40057493)
chr5 (483-554)||(4268678-4268750)
chr5 (522-554)||(39069495-39069527)
[»] chr3 (28 HSPs)
chr3 (481-554)||(48725388-48725462)
chr3 (486-554)||(46352751-46352820)
chr3 (484-554)||(39074535-39074606)
chr3 (494-553)||(42548213-42548272)
chr3 (486-554)||(10617284-10617353)
chr3 (494-554)||(41304120-41304181)
chr3 (483-554)||(52520798-52520870)
chr3 (484-554)||(42964247-42964318)
chr3 (484-554)||(43786988-43787059)
chr3 (484-554)||(50395561-50395632)
chr3 (477-554)||(6842736-6842814)
chr3 (486-554)||(272337-272406)
chr3 (509-554)||(2505466-2505511)
chr3 (513-554)||(33141002-33141043)
chr3 (509-554)||(40362604-40362649)
chr3 (509-554)||(49893448-49893493)
chr3 (484-554)||(4168300-4168371)
chr3 (485-554)||(858706-858776)
chr3 (485-554)||(43269738-43269808)
chr3 (485-553)||(2938039-2938108)
chr3 (494-554)||(28139426-28139487)
chr3 (510-554)||(49529291-49529335)
chr3 (494-554)||(52552590-52552650)
chr3 (511-553)||(24488484-24488526)
chr3 (486-554)||(7468528-7468595)
chr3 (509-554)||(11308235-11308279)
chr3 (489-554)||(20924109-20924173)
chr3 (486-554)||(41553940-41554009)
[»] scaffold0113 (1 HSPs)
scaffold0113 (486-554)||(41036-41105)
[»] scaffold0190 (1 HSPs)
scaffold0190 (509-554)||(15013-15058)
[»] scaffold0038 (1 HSPs)
scaffold0038 (484-554)||(25835-25906)
[»] scaffold0425 (1 HSPs)
scaffold0425 (477-554)||(10827-10905)
[»] scaffold0188 (1 HSPs)
scaffold0188 (484-554)||(6108-6179)
[»] scaffold0524 (1 HSPs)
scaffold0524 (509-554)||(942-987)
[»] scaffold0014 (1 HSPs)
scaffold0014 (513-554)||(68318-68359)
[»] scaffold0021 (1 HSPs)
scaffold0021 (476-554)||(116321-116400)
[»] scaffold0003 (1 HSPs)
scaffold0003 (484-554)||(53683-53754)
[»] scaffold0264 (1 HSPs)
scaffold0264 (485-554)||(23078-23148)
[»] scaffold0034 (1 HSPs)
scaffold0034 (516-554)||(95616-95654)
[»] scaffold1152 (1 HSPs)
scaffold1152 (486-554)||(795-863)
[»] scaffold0263 (1 HSPs)
scaffold0263 (475-554)||(19574-19654)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 28 - 313
Target Start/End: Complemental strand, 35465515 - 35465228
Alignment:
Q  28 gtaaaacaaaatggcgtagtattggtcatggttgcgtagcgtggctataatggatgcaagaaaagaaagaaggaaaagacacc-taagatttaggttaat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  35465515 gtaaaacaaaatggcgtagtattggtcatggttgcgtagcgtggctataatggatgcaagaaaagaaagaaggaaaagacaccagaagatttaggttaat 35465416  T
Q  127 tggaccactaattagtgcattttcactttttcatttcctcacatgcgctctg-tttttctctcttgaacgtcaataggttcatatcatccattttactag 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  35465415 tggaccactaattagtgcattttcactttttcatttcctcacatgcgctctgttttttctctcttgaacgtcaataggttcatatcatccattttacaag 35465316  T
Q  226 gagaacnnnnnnnntctggtaaagatgtttgaaactaatatatcatagtacttttttcgatataacattagactcagattcattaagc 313  Q
    ||||||        | |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  35465315 gagaacaaaaaaaatttggtaaagatatttgaaactaatatatcatagtaattttttcgatataacattagactcagatttattaagc 35465228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 331 - 485
Target Start/End: Complemental strand, 35465192 - 35465037
Alignment:
Q  331 taaccccattaaaagtgatttatcatagttttcatgcattattagtcacaagcgaagtaagtagatgttttacacctctaaca-ttgttagcgaaatttt 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  35465192 taaccccattaaaagtgatttatcatagttttcatgcattattagtcacaagcgaagttagtagatgttttacacctctaacatttgttagcgaaatttt 35465093  T
Q  430 ttatttatatcaagaaaagactatgaacaaacatacaaatgaaggtattatataaa 485  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35465092 ttatttatatcaagaaaagactatgaacaaacatacaaatgacggtattatataaa 35465037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 487 - 553
Target Start/End: Original strand, 11686324 - 11686390
Alignment:
Q  487 ggtcctactaaccggtgtctccgggcactggttaagcatatcataaaagggaattattaccataaaa 553  Q
    |||||| |||||||||| ||||||| || |||||||||||||||||||| |||||||||||||||||    
T  11686324 ggtcctgctaaccggtgcctccgggtacaggttaagcatatcataaaagagaattattaccataaaa 11686390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 484 - 554
Target Start/End: Original strand, 12218435 - 12218505
Alignment:
Q  484 aagggtcctactaaccggtgtctccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| |||||||||||| | ||||||||||||| |||| |||||||| ||||||||||||||||||    
T  12218435 aagggtcctgctaaccggtgtcccggggcactggttaaacataccataaaagagaattattaccataaaag 12218505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 486 - 554
Target Start/End: Complemental strand, 24438663 - 24438594
Alignment:
Q  486 gggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| |||||||||| | ||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  24438663 gggtcctgctaaccggtgcccccggggcactggttaagcataccataaaagggaattattaccataaaag 24438594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 486 - 554
Target Start/End: Original strand, 29993487 - 29993556
Alignment:
Q  486 gggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| ||||||| || ||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  29993487 gggtcctgctaaccgatgcctccgggacactggttaagcataccataaaagggaattattaccataaaag 29993556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 4628727 - 4628682
Alignment:
Q  510 ggcactggttaagcatatcataaaagggaattattaccataaaagt 555  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  4628727 ggcactggttaagcataccataaaagggaattattaccataaaagt 4628682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 485 - 554
Target Start/End: Original strand, 42044293 - 42044362
Alignment:
Q  485 agggtcctactaaccggtgtctccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||| | |||||||||| | | ||||||||||||| |||| |||||||||||||||||||||||||||    
T  42044293 agggtcatgctaaccggtgccccggggcactggttaaacataccataaaagggaattattaccataaaag 42044362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 485 - 554
Target Start/End: Complemental strand, 47083241 - 47083172
Alignment:
Q  485 agggtcctactaaccggtgtctccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||| ||||||||||||| | | | ||| ||||||| ||||||||||||||||||||||||||||||||    
T  47083241 agggttctactaaccggtgccccggagcattggttaaacatatcataaaagggaattattaccataaaag 47083172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 511 - 554
Target Start/End: Original strand, 13064902 - 13064945
Alignment:
Q  511 gcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  13064902 gcactggttaagcataccataaaagggaattattaccataaaag 13064945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 485 - 554
Target Start/End: Complemental strand, 34606448 - 34606378
Alignment:
Q  485 agggtcctactaaccggtg-tctccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||| |||||||||| || | |||||| ||||||||||| ||||||||| |||||||||||||||||    
T  34606448 agggtcctgctaaccggtgctcccggggcacgggttaagcataccataaaaggtaattattaccataaaag 34606378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 486 - 554
Target Start/End: Original strand, 525076 - 525144
Alignment:
Q  486 gggtcctactaaccggtgtctccgg-gcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| |||||||||| |||||| | ||||||||| ||||||||||||| ||||||||||||||||||    
T  525076 gggtcctgctaaccggtg-ctccggagtactggttaaacatatcataaaagagaattattaccataaaag 525144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 509 - 554
Target Start/End: Original strand, 24798427 - 24798472
Alignment:
Q  509 gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||    
T  24798427 gggcactggttaagcatactataaaagggaattattaccataaaag 24798472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 509 - 554
Target Start/End: Complemental strand, 45045932 - 45045887
Alignment:
Q  509 gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||    
T  45045932 gggcactggttaagcataccataaaagggaattattatcataaaag 45045887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 494 - 552
Target Start/End: Original strand, 23357718 - 23357777
Alignment:
Q  494 ctaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaa 552  Q
    |||| ||||||||||||| |||||||||||||||||||| ||| ||||||||| ||||||    
T  23357718 ctaatcggtgtctccggggcactggttaagcatatcatagaagagaattattatcataaa 23357777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 34333471 - 34333400
Alignment:
Q  484 aagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| |||||||||| | ||||| ||| |||||| |||| ||||||| |||||||||||||||||||    
T  34333471 aagggtcctgctaaccggtgcccccggggcacgggttaaacataccataaaaaggaattattaccataaaag 34333400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 510 - 553
Target Start/End: Complemental strand, 47657139 - 47657096
Alignment:
Q  510 ggcactggttaagcatatcataaaagggaattattaccataaaa 553  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||    
T  47657139 ggcactgattaagcataccataaaagggaattattaccataaaa 47657096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 484 - 553
Target Start/End: Complemental strand, 18117330 - 18117261
Alignment:
Q  484 aagggtcctactaaccggtgtctcc-gggcactggttaagcatatcataaaagggaattattaccataaaa 553  Q
    ||||||||||||||| |||| |||| |||||||||||||||||| ||||||| | ||||||||| ||||||    
T  18117330 aagggtcctactaactggtg-ctccagggcactggttaagcataccataaaatgaaattattactataaaa 18117261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 485 - 554
Target Start/End: Complemental strand, 18486148 - 18486078
Alignment:
Q  485 agggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||| ||| ||||||||||||| |||| ||| ||||||||||| ||||||| | |||||||||||||||||    
T  18486148 agggccctgctaaccggtgtcttcggggcacgggttaagcataccataaaatgaaattattaccataaaag 18486078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 509 - 554
Target Start/End: Original strand, 7689224 - 7689269
Alignment:
Q  509 gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||||||| ||| |||||||| ||||||||||||||||||    
T  7689224 gggcactggttaagtataccataaaagagaattattaccataaaag 7689269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 482 - 554
Target Start/End: Complemental strand, 38128482 - 38128409
Alignment:
Q  482 taaagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| | |||||||||| ||||||| |||||||||||||||  | |||||| |||| ||||||||||||    
T  38128482 taaagggtcatgctaaccggtgcctccggggcactggttaagcatacaaaaaaaggaaattcttaccataaaag 38128409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 509 - 554
Target Start/End: Complemental strand, 47839654 - 47839609
Alignment:
Q  509 gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||||||  |||| |||||||||||||||||||||||||||    
T  47839654 gggcactggttattcataccataaaagggaattattaccataaaag 47839609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 517 - 553
Target Start/End: Complemental strand, 5239439 - 5239403
Alignment:
Q  517 gttaagcatatcataaaagggaattattaccataaaa 553  Q
    |||||||||| ||||||||||||||||||||||||||    
T  5239439 gttaagcataccataaaagggaattattaccataaaa 5239403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 487 - 554
Target Start/End: Complemental strand, 5729531 - 5729463
Alignment:
Q  487 ggtcctactaaccggtgtctccg-ggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||| |||||| ||| ||||| ||||||||||||||||  |||||||| |||||||||| |||||||    
T  5729531 ggtcctgctaacctgtgcctccgaggcactggttaagcatgccataaaagagaattattactataaaag 5729463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 515 - 554
Target Start/End: Complemental strand, 28588065 - 28588026
Alignment:
Q  515 tggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| |||| |||||||||||||||||||||||||||    
T  28588065 tggttaaacataccataaaagggaattattaccataaaag 28588026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 553
Target Start/End: Complemental strand, 33636613 - 33636570
Alignment:
Q  510 ggcactggttaagcatatcataaaagggaattattaccataaaa 553  Q
    ||||||||||||||||| |||||||  |||||||||||||||||    
T  33636613 ggcactggttaagcataccataaaatagaattattaccataaaa 33636570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 554
Target Start/End: Original strand, 23363166 - 23363236
Alignment:
Q  485 agggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||| |||| |||||| | |||| |||||||||| |||| |||||||| ||| ||||||||||||||    
T  23363166 agggtcctgctaatcggtgttttcggggcactggttaaacataccataaaagagaaatattaccataaaag 23363236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 554
Target Start/End: Complemental strand, 46716825 - 46716755
Alignment:
Q  485 agggtcctactaaccggtgtctccgg-gcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||| ||||||||  ||| ||| |||| |||||| |||| |||||||||||||||||| ||||||||    
T  46716825 agggtcctgctaaccgggatcttcggagcaccggttaaacataccataaaagggaattattatcataaaag 46716755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 517 - 553
Target Start/End: Original strand, 8754617 - 8754653
Alignment:
Q  517 gttaagcatatcataaaagggaattattaccataaaa 553  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  8754617 gttaagcataccataaaaggaaattattaccataaaa 8754653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 485 - 554
Target Start/End: Original strand, 27988499 - 27988568
Alignment:
Q  485 agggtcctactaaccggtgtctccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||| |||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||    
T  27988499 agggtcctgctaaccggtgcccccgggcactggttaagcataccataaaagggaattattaccataaaag 27988568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 485 - 554
Target Start/End: Original strand, 28045801 - 28045870
Alignment:
Q  485 agggtcctactaaccggtgtctccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||| |||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||    
T  28045801 agggtcctgctaaccggtgcccccgggcactggttaagcataccataaaagggaattattaccataaaag 28045870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 478 - 554
Target Start/End: Original strand, 2805252 - 2805329
Alignment:
Q  478 tatataaagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||| |||||||  |||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  2805252 tatatatagggtccggctaaccggtgcctccggggcactggttaagcataccataaaagggaattattaccataaaag 2805329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 485 - 554
Target Start/End: Original strand, 9063051 - 9063121
Alignment:
Q  485 agggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||| ||||||||||  |||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  9063051 agggtcctgctaaccggtgcttccggggcactggttaagcatatcacaaaagggaattattaccataaaag 9063121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 486 - 554
Target Start/End: Complemental strand, 34228868 - 34228799
Alignment:
Q  486 gggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| |||||||||| | ||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  34228868 gggtcctgctaaccggtgcccccggggcactggttaagcataccataaaagggaattattaccataaaag 34228799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 486 - 553
Target Start/End: Original strand, 9537824 - 9537892
Alignment:
Q  486 gggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaa 553  Q
    ||||||| |||||||||||||||||| ||||||||||||||| ||||||||| ||||||||| ||||||    
T  9537824 gggtcctgctaaccggtgtctccgggacactggttaagcataccataaaaggaaattattactataaaa 9537892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 484 - 554
Target Start/End: Original strand, 4537742 - 4537813
Alignment:
Q  484 aagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| |||||||||| ||| ||| ||| ||||||||||| |||||||||||||||||||||||||||    
T  4537742 aagggtcctgctaaccggtgcctctggggcacaggttaagcataccataaaagggaattattaccataaaag 4537813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 481 - 554
Target Start/End: Original strand, 42034976 - 42035050
Alignment:
Q  481 ataaagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||||  |||||||||||||| ||| |||  |||||||||| |||||||||||||||||||||||||||    
T  42034976 ataaagggtcccgctaaccggtgtctctggggcacgtgttaagcataccataaaagggaattattaccataaaag 42035050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 13643199 - 13643128
Alignment:
Q  484 aagggtcctactaaccggtgtctcc--gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| |||||||||| ||||  |||||||||||||||||| |||||||| ||||||||||||||||||    
T  13643199 aagggtcctgctaaccggtg-ctcctagggcactggttaagcataccataaaagagaattattaccataaaag 13643128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 13743624 - 13743553
Alignment:
Q  484 aagggtcctactaaccggtgtctcc--gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| |||||||||| ||||  |||||||||||||||||| |||||||| ||||||||||||||||||    
T  13743624 aagggtcctgctaaccggtg-ctcctagggcactggttaagcataccataaaagagaattattaccataaaag 13743553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 494 - 554
Target Start/End: Complemental strand, 21596024 - 21595963
Alignment:
Q  494 ctaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||| ||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||    
T  21596024 ctaaccagtgtctccgggacactggttaagcataccataaaagggaattaataccataaaag 21595963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 483 - 554
Target Start/End: Original strand, 29444137 - 29444209
Alignment:
Q  483 aaagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||||  ||| ||||| ||||||| |||||||||| |||| |||||||||||||||||||||||||||    
T  29444137 aaagggtcctgttaatcggtgcctccgggacactggttaaacataccataaaagggaattattaccataaaag 29444209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 487 - 554
Target Start/End: Original strand, 30675574 - 30675641
Alignment:
Q  487 ggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||| |||||||||||| ||||| ||||||||||||||| ||||||| |||||||||||||||||||    
T  30675574 ggtcctgctaaccggtgtccccggggcactggttaagcataccataaaa-ggaattattaccataaaag 30675641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 485 - 554
Target Start/End: Complemental strand, 168653 - 168583
Alignment:
Q  485 agggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||| |||||||||| | ||||| || |||||||||||| ||||||| |||||||||||||||||||    
T  168653 agggtcctgctaaccggtgcccccggggcattggttaagcataccataaaatggaattattaccataaaag 168583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 486 - 554
Target Start/End: Original strand, 7304518 - 7304587
Alignment:
Q  486 gggtcctactaaccggtgtctccgg-gcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||||||||||| | |||| |||||||||||||||| |||||||| ||||||||  ||||||||    
T  7304518 gggtcctactaaccggtgcccccggagcactggttaagcataccataaaagagaattattttcataaaag 7304587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 486 - 554
Target Start/End: Original strand, 20831553 - 20831622
Alignment:
Q  486 gggtcctactaaccggtgtctccgg-gcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| |||||||||||| | || |||||| ||||||||| |||||||| ||||||||||||||||||    
T  20831553 gggtcctgctaaccggtgtcccgggagcactgattaagcataccataaaagagaattattaccataaaag 20831622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 513 - 549
Target Start/End: Complemental strand, 4648352 - 4648316
Alignment:
Q  513 actggttaagcatatcataaaagggaattattaccat 549  Q
    |||||||||||||||||||||||||||||||||||||    
T  4648352 actggttaagcatatcataaaagggaattattaccat 4648316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 499 - 554
Target Start/End: Complemental strand, 37373378 - 37373322
Alignment:
Q  499 cggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||||||| ||| ||||||||||| ||| |||||||||||||||||||||||    
T  37373378 cggtgtctccgggacacgggttaagcataccatgaaagggaattattaccataaaag 37373322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 32114097 - 32114026
Alignment:
Q  484 aagggtcctactaaccggtgtctccgg-gcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| |||||||||| ||| || ||||||||||| ||||  ||||||||||||||||| ||||||||    
T  32114097 aagggtcctgctaaccggtggctctggagcactggttaaacatactataaaagggaattattatcataaaag 32114026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 509 - 554
Target Start/End: Original strand, 3930257 - 3930302
Alignment:
Q  509 gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||||||||||||||||||||| |||||||| || |||||    
T  3930257 gggcactggttaagcatatcataaaaggaaattattatcaaaaaag 3930302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 486 - 554
Target Start/End: Original strand, 16394061 - 16394130
Alignment:
Q  486 gggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| |||||||||| | ||||| || |||||||||||| |||||||| ||||||||| ||||||||    
T  16394061 gggtcctgctaaccggtgcccccggggcattggttaagcataccataaaagagaattattagcataaaag 16394130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 486 - 554
Target Start/End: Original strand, 16888544 - 16888613
Alignment:
Q  486 gggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| |||||||||| | ||||| || |||||||||||| || ||||| ||||||||||||||||||    
T  16888544 gggtcctgctaaccggtgcccccggggcattggttaagcataccacaaaagagaattattaccataaaag 16888613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 509 - 554
Target Start/End: Original strand, 33357153 - 33357198
Alignment:
Q  509 gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| |||||||||| |||||||| ||||||||||||||||||    
T  33357153 gggcactagttaagcataccataaaagagaattattaccataaaag 33357198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 495 - 554
Target Start/End: Complemental strand, 12204031 - 12203971
Alignment:
Q  495 taaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||| |||| ||||| |||||||| |||||| |||||||||||||||||| ||||||||    
T  12204031 taaccgatgtccccgggacactggttcagcataccataaaagggaattattatcataaaag 12203971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 495 - 554
Target Start/End: Complemental strand, 12448459 - 12448399
Alignment:
Q  495 taaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||| |||| ||||| |||||||| |||||| |||||||||||||||||| ||||||||    
T  12448459 taaccgatgtccccgggacactggttcagcataccataaaagggaattattatcataaaag 12448399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 510 - 554
Target Start/End: Original strand, 16890505 - 16890549
Alignment:
Q  510 ggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||| ||||||||||| ||||||| |||||||||||||||||||    
T  16890505 ggcaccggttaagcataccataaaaaggaattattaccataaaag 16890549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 489 - 553
Target Start/End: Complemental strand, 28626950 - 28626886
Alignment:
Q  489 tcctactaaccggtgtctccgggcactggttaagcatatcataaaagggaattattaccataaaa 553  Q
    |||| ||||||||||   |||| ||||| ||||||||| |||||||||||||||||| |||||||    
T  28626950 tcctgctaaccggtgctcccggacactgattaagcataccataaaagggaattattatcataaaa 28626886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 494 - 554
Target Start/End: Complemental strand, 36730621 - 36730561
Alignment:
Q  494 ctaaccggtgtctccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||| | | |||||| |||||||||||  ||||||| ||||||||||||||||||    
T  36730621 ctaaccggtgccacggggcacaggttaagcatactataaaagagaattattaccataaaag 36730561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 486 - 554
Target Start/End: Complemental strand, 43119402 - 43119334
Alignment:
Q  486 gggtcctactaaccggtgtctccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| |||||||||| | | || || |||||||||||| |||||||| ||||||| ||||||||||    
T  43119402 gggtcctgctaaccggtgccccgggccattggttaagcataccataaaagagaattatcaccataaaag 43119334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 554
Target Start/End: Complemental strand, 39407024 - 39406959
Alignment:
Q  488 gtcctactaaccggtgtctccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||| |||||||||| | | ||||||| ||||| |||| |||||||||||||||||| ||||||||    
T  39407024 gtcctgctaaccggtgcc-cggggcactagttaaacataccataaaagggaattattatcataaaag 39406959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 554
Target Start/End: Complemental strand, 10870498 - 10870469
Alignment:
Q  525 tatcataaaagggaattattaccataaaag 554  Q
    ||||||||||||||||||||||||||||||    
T  10870498 tatcataaaagggaattattaccataaaag 10870469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 554
Target Start/End: Complemental strand, 11112801 - 11112756
Alignment:
Q  509 gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||| ||||||||||| |||||||| ||||||||| ||||||||    
T  11112801 gggcacaggttaagcataccataaaagtgaattattatcataaaag 11112756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 22956894 - 22956822
Alignment:
Q  484 aagggtcctactaaccggtgtctccgggcactggttaagcatatcat--aaaagggaattattaccataaaag 554  Q
    |||||||||  |||||||||||| ||||||||  |||| |||| |||  ||||||||||| ||||||||||||    
T  22956894 aagggtcctgttaaccggtgtcttcgggcacttattaaacataccataaaaaagggaatttttaccataaaag 22956822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 481 - 554
Target Start/End: Original strand, 34442528 - 34442601
Alignment:
Q  481 ataaagggtcctactaaccggtgtctccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||||| ||||||| || | |||||||||||||||||||| |||||||||||||||||||||||||||    
T  34442528 ataaagggtcctgctaaccgatgcccccgggcactggttaagcataccataaaagggaattattaccataaaag 34442601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 20553119 - 20553048
Alignment:
Q  484 aagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| |||||||||| | ||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  20553119 aagggtcctgctaaccggtgcccccggggcactggttaagcataccataaaagggaattattaccataaaag 20553048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 31438834 - 31438763
Alignment:
Q  484 aagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| |||||||||||| ||||| ||||||||||||||| |||||||||||||||||| ||||||||    
T  31438834 aagggtcctgctaaccggtgtccccggggcactggttaagcataccataaaagggaattattatcataaaag 31438763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 486 - 554
Target Start/End: Complemental strand, 30486396 - 30486327
Alignment:
Q  486 gggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| |||||||||| | ||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  30486396 gggtcctgctaaccggtgcccccggggcactggttaagcataccataaaagggaattattaccataaaag 30486327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 475 - 554
Target Start/End: Original strand, 22068309 - 22068389
Alignment:
Q  475 tattatataaagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| | |||||||| |||| ||||| | ||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  22068309 tattatacatagggtcctgctaatcggtgcccccggggcactggttaagcataccataaaagggaattattaccataaaag 22068389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 487 - 553
Target Start/End: Original strand, 13574031 - 13574097
Alignment:
Q  487 ggtcctactaaccggtgtctccgggcactggttaagcatatcataaaagggaattattaccataaaa 553  Q
    |||||| |||||||||||||  |||||| ||||||||||| ||||||||| ||||||||||||||||    
T  13574031 ggtcctgctaaccggtgtcttagggcacgggttaagcataccataaaaggaaattattaccataaaa 13574097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 509 - 554
Target Start/End: Complemental strand, 6580351 - 6580306
Alignment:
Q  509 gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  6580351 gggcactggttaagcataccataaaagggaattattaccataaaag 6580306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 486 - 554
Target Start/End: Original strand, 32360869 - 32360938
Alignment:
Q  486 gggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| |||||||||| | ||||| || |||||||||||| |||||||||||||||||||||||||||    
T  32360869 gggtcctgctaaccggtgcccccggggcattggttaagcataccataaaagggaattattaccataaaag 32360938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 510 - 554
Target Start/End: Original strand, 26387089 - 26387133
Alignment:
Q  510 ggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  26387089 ggcactggttaagcataccataaaagggaattattaccataaaag 26387133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 494 - 554
Target Start/End: Original strand, 38590883 - 38590943
Alignment:
Q  494 ctaaccggtgtctccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||| ||| ||| | |||||||||||| |||||||||||||||||||||||||||    
T  38590883 ctaaccggtgcctcggggtattggttaagcataccataaaagggaattattaccataaaag 38590943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 476 - 554
Target Start/End: Original strand, 4022469 - 4022548
Alignment:
Q  476 attatataaagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||| |||| |||||| |||||||||| | ||||| |||||||||| |||||||||||||| |||||||| ||||||||    
T  4022469 attatttaaaaggtcctgctaaccggtgcccccgggacactggttaaacatatcataaaaggaaattattatcataaaag 4022548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 4381983 - 4381912
Alignment:
Q  484 aagggtcctactaaccggtg-tctccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| |||||| ||| || | |||||||||||||||||| ||||||| |||||||||||||||||||    
T  4381983 aagggtcctgctaaccagtgctcccggggcactggttaagcataccataaaatggaattattaccataaaag 4381912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 554
Target Start/End: Original strand, 27856394 - 27856465
Alignment:
Q  484 aagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| ||||||| || | ||||| ||||||||||||||| ||||||||| |||||||||||||||||    
T  27856394 aagggtcctgctaaccgatgcccccggggcactggttaagcataccataaaaggaaattattaccataaaag 27856465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 483 - 553
Target Start/End: Complemental strand, 28601155 - 28601084
Alignment:
Q  483 aaagggtcctactaaccggtg-tctccgggcactggttaagcatatcataaaagggaattattaccataaaa 553  Q
    |||||||||| |||||||||| || | | |||||||||||||||| |||||||| |||||||||||||||||    
T  28601155 aaagggtcctgctaaccggtgctcccagtgcactggttaagcataccataaaagagaattattaccataaaa 28601084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 509 - 554
Target Start/End: Complemental strand, 1859324 - 1859279
Alignment:
Q  509 gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||    
T  1859324 gggcactggttaagcataccataaaagagaattattaccataaaag 1859279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 494 - 554
Target Start/End: Original strand, 25782841 - 25782902
Alignment:
Q  494 ctaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| |||| ||||| ||||||||||||||| |||||||||||||||||| ||||||||    
T  25782841 ctaaccgatgtccccgggacactggttaagcataccataaaagggaattattatcataaaag 25782902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 486 - 554
Target Start/End: Complemental strand, 31390198 - 31390129
Alignment:
Q  486 gggtcctactaaccggtgtctccgg-gcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| |||| ||||| | |||| |||| ||||||||||| |||||||||||||||||||||||||||    
T  31390198 gggtcctgctaatcggtgcccccggagcacgggttaagcataccataaaagggaattattaccataaaag 31390129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 509 - 554
Target Start/End: Complemental strand, 44588064 - 44588019
Alignment:
Q  509 gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||    
T  44588064 gggcacttgttaagcataccataaaagggaattattaccataaaag 44588019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 22567790 - 22567719
Alignment:
Q  484 aagggtcctactaaccggtgtctccgg-gcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| |||||||||| | | || |||| ||||||||||| |||||||| ||||||||||||||||||    
T  22567790 aagggtcctgctaaccggtgcccctggagcacgggttaagcataccataaaagagaattattaccataaaag 22567719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 511 - 554
Target Start/End: Complemental strand, 22887910 - 22887867
Alignment:
Q  511 gcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||||||||| |||||||| ||||||||||||||||||    
T  22887910 gcactggttaagcataccataaaagagaattattaccataaaag 22887867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 554
Target Start/End: Original strand, 3668111 - 3668182
Alignment:
Q  484 aagggtcctactaaccggtgtc-tccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| | |||||||||| | || ||||||||||||| ||||  |||||||| |||||||||||||||||    
T  3668111 aagggtcttgctaaccggtgccctcggggcactggttaaacatactataaaaggaaattattaccataaaag 3668182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 554
Target Start/End: Complemental strand, 27584922 - 27584855
Alignment:
Q  487 ggtcctactaaccggtgtctccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||| ||||||| ||  ||||||||||||||||| ||| ||| || | ||||||||||||||||||    
T  27584922 ggtcctgctaaccgctgcttccgggcactggttaagtataccatgaatgagaattattaccataaaag 27584855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 553
Target Start/End: Original strand, 35851776 - 35851819
Alignment:
Q  510 ggcactggttaagcatatcataaaagggaattattaccataaaa 553  Q
    |||| |||||||||||| |||||||| |||||||||||||||||    
T  35851776 ggcattggttaagcataccataaaagagaattattaccataaaa 35851819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 554
Target Start/End: Original strand, 8969402 - 8969476
Alignment:
Q  481 ataaagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| || |||||||||| | | ||| |||| ||||||||||  |||||||| |||||||||||||||||    
T  8969402 ataaagggtactgctaaccggtgccccaggggcactagttaagcatactataaaaggaaattattaccataaaag 8969476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 482 - 522
Target Start/End: Original strand, 2472761 - 2472801
Alignment:
Q  482 taaagggtcctactaaccggtgtctccgggcactggttaag 522  Q
    |||||||| ||||||| ||||||| ||||||||||||||||    
T  2472761 taaagggtgctactaatcggtgtccccgggcactggttaag 2472801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 546
Target Start/End: Complemental strand, 32860290 - 32860226
Alignment:
Q  483 aaagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattac 546  Q
    ||||||||||  |||| | |||| ||||| ||||||||||||||| |||||||| ||||||||||    
T  32860290 aaagggtcctgttaacagctgtccccgggacactggttaagcataccataaaagagaattattac 32860226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 491 - 554
Target Start/End: Original strand, 11115103 - 11115166
Alignment:
Q  491 ctactaaccggtgtctccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  11115103 ctactaaccggtgtcccggggcactggttaaacatatcataaaagggaattattaccataaaag 11115166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 484 - 554
Target Start/End: Original strand, 13416958 - 13417028
Alignment:
Q  484 aagggtcctactaaccggtgtctccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||  |||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  13416958 aagggtccagctaaccggtgcctccgggcactggttaagcatattataaaagagaattattaccataaaag 13417028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 494 - 554
Target Start/End: Complemental strand, 2350830 - 2350769
Alignment:
Q  494 ctaaccggtgtctccgggc-actggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  2350830 ctaaccggtgtctccggggtactggttaagcatatcataaaagggaattattaccataaaag 2350769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 484 - 553
Target Start/End: Complemental strand, 29978419 - 29978350
Alignment:
Q  484 aagggtcctactaaccggtgtctccgggcactggttaagcatatcataaaagggaattattaccataaaa 553  Q
    ||||||||| |||||||||||  | |||| ||||||||||||||||||||||||||||||||||||||||    
T  29978419 aagggtcctgctaaccggtgttccagggcgctggttaagcatatcataaaagggaattattaccataaaa 29978350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 484 - 554
Target Start/End: Original strand, 32929506 - 32929577
Alignment:
Q  484 aagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| |||||||||| | ||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  32929506 aagggtcctgctaaccggtgcccccggggcactggttaagcataccataaaagggaattattaccataaaag 32929577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 475 - 554
Target Start/End: Complemental strand, 23402335 - 23402255
Alignment:
Q  475 tattatataaagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||| | ||||||||| |||||||||| ||||||| ||| ||||||||||| ||||||||| |||||||||||||||||    
T  23402335 tattattttaagggtcctgctaaccggtgcctccggggcacgggttaagcataccataaaaggtaattattaccataaaag 23402255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 392284 - 392213
Alignment:
Q  484 aagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| |||||||||| | ||||| ||||||||||||||| |||||||| ||||||||||||||||||    
T  392284 aagggtcctgctaaccggtgcccccggggcactggttaagcataccataaaagagaattattaccataaaag 392213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 485 - 553
Target Start/End: Complemental strand, 12525906 - 12525837
Alignment:
Q  485 agggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaa 553  Q
    |||||||| ||||||||| || | ||| |||| |||||||||||||||||||||||||||||||||||||    
T  12525906 agggtcctgctaaccggtatccctggggcactagttaagcatatcataaaagggaattattaccataaaa 12525837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 478 - 554
Target Start/End: Original strand, 32985185 - 32985262
Alignment:
Q  478 tatataaagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||| ||||| || |||||||||| | ||||| ||||||||||||||| |||||||||||||||||| ||||||||    
T  32985185 tatatatagggttctgctaaccggtgcccccggggcactggttaagcataccataaaagggaattattatcataaaag 32985262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 554
Target Start/End: Original strand, 1840245 - 1840316
Alignment:
Q  484 aagggtcctactaaccggtgtctcc-gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| | ||||||||||| ||  ||||||||||||| ||||||||||||||||||||||||||| ||||    
T  1840245 aagggtcttgctaaccggtgtttctagggcactggttaaacatatcataaaagggaattattaccatgaaag 1840316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 4215883 - 4215812
Alignment:
Q  484 aagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| ||||||| || | ||||| ||||||||||||||| ||||||||| |||||||||||||||||    
T  4215883 aagggtcctgctaaccgatgcccccggggcactggttaagcataccataaaaggaaattattaccataaaag 4215812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 554
Target Start/End: Original strand, 26467122 - 26467193
Alignment:
Q  484 aagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| | |||||||||| ||||||| |||||||||  |||| |||||||||||||||||||||||||||    
T  26467122 aagggtcatgctaaccggtgcctccggggcactggttagacataccataaaagggaattattaccataaaag 26467193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 28225408 - 28225337
Alignment:
Q  484 aagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||||||||| ||| || |||| ||||| ||||| ||| |||||||||||||||||||||||||||    
T  28225408 aagggtcctactaacctgtgccttcgggtcactgtttaaggataccataaaagggaattattaccataaaag 28225337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 495 - 554
Target Start/End: Complemental strand, 35044065 - 35044006
Alignment:
Q  495 taaccggtgtctccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| | | |||||||||||||||||| |||||||| ||||||||||||||||||    
T  35044065 taaccggtgccccggggcactggttaagcataccataaaagagaattattaccataaaag 35044006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 485 - 554
Target Start/End: Complemental strand, 2581139 - 2581069
Alignment:
Q  485 agggtcctactaaccggtg-tctccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||| |||||||||| || | ||| | |||||||||||| |||||||||||||||||||||||||||    
T  2581139 agggtcctgctaaccggtgctcccggggtattggttaagcataccataaaagggaattattaccataaaag 2581069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 494 - 554
Target Start/End: Original strand, 7851167 - 7851228
Alignment:
Q  494 ctaaccggtgtctcc-gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||||||||  ||||||  |||||||||| |||||||||||||||||||||||||||    
T  7851167 ctaaccggtgtctctagggcacgagttaagcataccataaaagggaattattaccataaaag 7851228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 486 - 554
Target Start/End: Original strand, 12145117 - 12145186
Alignment:
Q  486 gggtcctactaaccggtgtctccgg-gcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| |||||||||| |||||| ||||||||||||||||  |||||||| |||||||| ||||||||    
T  12145117 gggtcctgctaaccggtgcctccggagcactggttaagcatactataaaaggaaattattatcataaaag 12145186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 486 - 554
Target Start/End: Original strand, 1391178 - 1391247
Alignment:
Q  486 gggtcctactaaccggtgtctccggg--cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| ||||||||||| ||| ||  ||||||||||||||| |||||||||||||||||| ||||||||    
T  1391178 gggtcctgctaaccggtgt-tcctggaacactggttaagcataccataaaagggaattattatcataaaag 1391247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 484 - 554
Target Start/End: Original strand, 25165411 - 25165482
Alignment:
Q  484 aagggtcctactaaccggtg-tctccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| |||||||||| || | ||||| |||||||||||||| |||||| ||||||||| ||||||||    
T  25165411 aagggtcctgctaaccggtgctcccagggcattggttaagcatatcgtaaaagagaattattatcataaaag 25165482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 509 - 554
Target Start/End: Complemental strand, 3515928 - 3515883
Alignment:
Q  509 gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||| |||||| |||| |||||||||||||||||||||||||||    
T  3515928 gggcacaggttaaacataccataaaagggaattattaccataaaag 3515883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 509 - 554
Target Start/End: Complemental strand, 5323562 - 5323517
Alignment:
Q  509 gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||| ||||| ||||| |||||||||||||||||||||||||||    
T  5323562 gggcaccggttacgcataccataaaagggaattattaccataaaag 5323517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 509 - 554
Target Start/End: Original strand, 29451139 - 29451184
Alignment:
Q  509 gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||| ||||||||||| |||||||||||||||||| ||||||||    
T  29451139 gggcacgggttaagcataccataaaagggaattattatcataaaag 29451184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 486 - 554
Target Start/End: Original strand, 34851849 - 34851918
Alignment:
Q  486 gggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| |||| ||||||| ||||  |||||||||||||||| ||||||| |||||||||| |||||||    
T  34851849 gggtcctgctaatcggtgtcaccggaacactggttaagcatattataaaagagaattattactataaaag 34851918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 27433680 - 27433609
Alignment:
Q  484 aagggtcctactaaccggtgtctccgggca-ctggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| | |||||||||| | ||||| | | |||||| |||| |||||||||||||||||||||||||||    
T  27433680 aagggtcttgctaaccggtgcccccggggaacgggttaaacataccataaaagggaattattaccataaaag 27433609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 531
Target Start/End: Complemental strand, 31280501 - 31280456
Alignment:
Q  486 gggtcctactaaccggtgtctccgggcactggttaagcatatcata 531  Q
    ||||||| |||||||||| ||||||||||| |||||||||| ||||    
T  31280501 gggtcctgctaaccggtgcctccgggcactcgttaagcataccata 31280456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 483 - 554
Target Start/End: Original strand, 43202381 - 43202452
Alignment:
Q  483 aaagggtcctactaaccggtgtctccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||| |||||||||| | ||||||||||||||||| || |||||||| ||||||||||||||||||    
T  43202381 aaagggtcctgctaaccggtgcccccgggcactggttaagcttaccataaaagagaattattaccataaaag 43202452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 50619273 - 50619203
Alignment:
Q  484 aagggtcctactaaccggtgtctccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||  |||||||||| | | |||||||||||||||||| |||||||||||||||||||||||||||    
T  50619273 aagggtcccgctaaccggtgcccctgggcactggttaagcataccataaaagggaattattaccataaaag 50619203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 485 - 554
Target Start/End: Complemental strand, 16821039 - 16820969
Alignment:
Q  485 agggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||| |||||||||| | ||||| ||||||||||||||| ||||||||| |||||||||||||||||    
T  16821039 agggtcctgctaaccggtgcccccggggcactggttaagcataccataaaaggaaattattaccataaaag 16820969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 485 - 554
Target Start/End: Original strand, 33108672 - 33108742
Alignment:
Q  485 agggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||| |||||||||| ||||||| ||| ||||||||||| ||||||| |||||||||||||||||||    
T  33108672 agggtcctgctaaccggtgcctccggggcacgggttaagcataccataaaaaggaattattaccataaaag 33108742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 494 - 554
Target Start/End: Original strand, 789538 - 789599
Alignment:
Q  494 ctaaccggtgtctccgggc-actggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||| ||| |||| |||||||||||||| |||||||||||||||||||||||||||    
T  789538 ctaaccggtgcctctgggctactggttaagcataccataaaagggaattattaccataaaag 789599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 486 - 554
Target Start/End: Complemental strand, 6164279 - 6164210
Alignment:
Q  486 gggtcctactaaccggtgtc-tccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| |||||||||||| || ||| |||||||||||||| |||||||| ||||||||||||||||||    
T  6164279 gggtcctgctaaccggtgtcctcggggtactggttaagcataccataaaagagaattattaccataaaag 6164210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 481 - 553
Target Start/End: Complemental strand, 32217235 - 32217162
Alignment:
Q  481 ataaagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaa 553  Q
    ||||||||||||  ||||||||| ||||||| ||| ||||||||||| |||||||||||||||||| |||||||    
T  32217235 ataaagggtcctgttaaccggtgcctccggggcacaggttaagcataccataaaagggaattattatcataaaa 32217162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 486 - 554
Target Start/End: Complemental strand, 54897494 - 54897425
Alignment:
Q  486 gggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| |||||||||| ||||||| |||||||||| |||| ||||||||| |||||||||||||||||    
T  54897494 gggtcctgctaaccggtgcctccgggacactggttaaacataccataaaaggaaattattaccataaaag 54897425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 486 - 553
Target Start/End: Original strand, 4268822 - 4268890
Alignment:
Q  486 gggtcctactaaccggtgtc-tccgggcactggttaagcatatcataaaagggaattattaccataaaa 553  Q
    ||||||| |||||||||| | || ||||||||||||| |||| ||||||||||||||||||||||||||    
T  4268822 gggtcctgctaaccggtgccctcggggcactggttaatcataccataaaagggaattattaccataaaa 4268890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 494 - 554
Target Start/End: Complemental strand, 43944684 - 43944624
Alignment:
Q  494 ctaaccggtgtctccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||| |  ||||||||||||||||||| |||| ||||||||||||||||||||||    
T  43944684 ctaaccggtgccctcgggcactggttaagcataccatacaagggaattattaccataaaag 43944624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 29591377 - 29591306
Alignment:
Q  484 aagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| |||||||||| | ||||| |||| |||||||||| ||||||||| |||||||||||||||||    
T  29591377 aagggtcctgctaaccggtgcccccggggcactagttaagcataccataaaaggtaattattaccataaaag 29591306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 36395287 - 36395216
Alignment:
Q  484 aagggtcctactaaccggtgtctcc-gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| ||||| |||| | || |||||||||||||||||| |||||||||||||||||| ||||||||    
T  36395287 aagggtcctgctaactggtgcccccagggcactggttaagcataccataaaagggaattattatcataaaag 36395216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 484 - 553
Target Start/End: Complemental strand, 31517353 - 31517284
Alignment:
Q  484 aagggtcctactaaccggtgtctccgggcactggttaagcatatcataaaagggaattattaccataaaa 553  Q
    ||||||||| |||| ||||| | || ||||||||||||||||| |||| ||| |||||||||||||||||    
T  31517353 aagggtccttctaatcggtgcccccaggcactggttaagcataccatataagagaattattaccataaaa 31517284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 486 - 554
Target Start/End: Original strand, 5091612 - 5091679
Alignment:
Q  486 gggtcctactaaccggtgtctccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| ||||||||||   |||| ||||||||||||||| ||||||||||||||||||| |||||||    
T  5091612 gggtcctgctaaccggtgctcccggacactggttaagcata-cataaaagggaattattactataaaag 5091679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 482 - 545
Target Start/End: Original strand, 53003952 - 53004016
Alignment:
Q  482 taaagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattatta 545  Q
    ||||||||||| |||||||||||| | ||| ||||| |||||||||||||||||| |||||||||    
T  53003952 taaagggtcctgctaaccggtgtcccggggacactgattaagcatatcataaaagagaattatta 53004016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 16536236 - 16536165
Alignment:
Q  484 aagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| |||||||||| | ||||| ||||||||||| ||| |||||||  ||||||||||||||||||    
T  16536236 aagggtcctgctaaccggtgcccccggggcactggttaagaataccataaaatagaattattaccataaaag 16536165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 477 - 554
Target Start/End: Complemental strand, 12356439 - 12356361
Alignment:
Q  477 ttatataaagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||| ||| ||||||| |||||||||| | ||||  ||||||||||||||| |||||||| ||||||||| ||||||||    
T  12356439 ttatttaatgggtcctgctaaccggtgcccccggaacactggttaagcataccataaaagagaattattatcataaaag 12356361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 485 - 554
Target Start/End: Original strand, 28119905 - 28119975
Alignment:
Q  485 agggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||| | |||||||||||||||||| |||||||||||||||  | |||||| |||| ||||||||||||    
T  28119905 agggtcatgctaaccggtgtctccggggcactggttaagcatacaaaaaaaggaaattcttaccataaaag 28119975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 485 - 554
Target Start/End: Original strand, 30387133 - 30387203
Alignment:
Q  485 agggtcctactaaccggtgtctcc-gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||| || ||||||||||| ||| ||| | || ||||||||||||||||| |||||||||||||||||||    
T  30387133 agggttctgctaaccggtgtttccagggtattgattaagcatatcataaaaaggaattattaccataaaag 30387203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 484 - 553
Target Start/End: Complemental strand, 50603416 - 50603346
Alignment:
Q  484 aagggtcctactaaccggtgt-ctccgggcactggttaagcatatcataaaagggaattattaccataaaa 553  Q
    ||||||||| ||||| ||||| ||| ||| |||||||||||||| |||||||| ||||||||| |||||||    
T  50603416 aagggtcctgctaactggtgttctcggggtactggttaagcataccataaaagagaattattatcataaaa 50603346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 509 - 554
Target Start/End: Complemental strand, 4089304 - 4089259
Alignment:
Q  509 gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||||||| |||| |||||||| ||||||||||||||||||    
T  4089304 gggcactggttaaacataccataaaagagaattattaccataaaag 4089259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 518 - 554
Target Start/End: Original strand, 3783534 - 3783570
Alignment:
Q  518 ttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| |||||||||||||||||||||||||||    
T  3783534 ttaagcataccataaaagggaattattaccataaaag 3783570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 483 - 554
Target Start/End: Complemental strand, 7769127 - 7769055
Alignment:
Q  483 aaagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||| |||||||||| | ||||| ||| ||||||| ||  |||||||| ||||||||||||||||||    
T  7769127 aaagggtcctgctaaccggtgcccccggggcacgggttaagtatgccataaaagagaattattaccataaaag 7769055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 554
Target Start/End: Original strand, 18067877 - 18067948
Alignment:
Q  484 aagggtcctactaaccggtgtctccgggca-ctggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| | |||||||||| | ||||| | | |||||| |||| |||||||||||||||||||||||||||    
T  18067877 aagggtcttgctaaccggtgcccccggggaacgggttaaacataccataaaagggaattattaccataaaag 18067948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 37988123 - 37988052
Alignment:
Q  484 aagggtcctactaaccggtg-tctccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||||||||||||| | || ||| | ||||||||||||  ||||||| |||||||||| |||||||    
T  37988123 aagggtcctactaaccggtgctttcgggggattggttaagcatactataaaagagaattattacaataaaag 37988052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 486 - 553
Target Start/End: Original strand, 39877247 - 39877317
Alignment:
Q  486 gggtcctactaaccggtgtctccggg-cactggttaagcatat--cataaaagggaattattaccataaaa 553  Q
    ||||||| |||||| ||| ||||||| ||||||||||||||||  |||||||| |||||||||| ||||||    
T  39877247 gggtcctgctaacccgtgcctccggggcactggttaagcatataccataaaagagaattattactataaaa 39877317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 553
Target Start/End: Original strand, 53655887 - 53655946
Alignment:
Q  495 taaccggtgtctccg-ggcactggttaagcatatcataaaagggaattattaccataaaa 553  Q
    ||||||||| ||||| ||||||| ||||||||| ||||||| | ||||||||||||||||    
T  53655887 taaccggtgcctccgaggcactgattaagcataccataaaatgaaattattaccataaaa 53655946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 55882870 - 55882800
Alignment:
Q  484 aagggtcctactaaccggtgtctccg-ggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||||||||||||| | ||| ||||| ||||||| ||| |||||||| ||||| ||||||||||||    
T  55882870 aagggtcctactaaccggtgcccccgaggcacgggttaagtataccataaaagtgaatt-ttaccataaaag 55882800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 516 - 554
Target Start/End: Original strand, 52533816 - 52533854
Alignment:
Q  516 ggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  52533816 ggttaaacataccataaaagggaattattaccataaaag 52533854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 554
Target Start/End: Original strand, 54655879 - 54655945
Alignment:
Q  488 gtcctactaaccggtgtctccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||| |||||||||| | | || ||||||||||||||||||||| || ||||||||| | ||||||    
T  54655879 gtcctgctaaccggtgccccgggacactggttaagcatatcataagagagaattattatcctaaaag 54655945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Original strand, 19503137 - 19503174
Alignment:
Q  517 gttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||| ||||||||||||||||||| |||||||    
T  19503137 gttaagcataccataaaagggaattattacaataaaag 19503174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 554
Target Start/End: Original strand, 37402751 - 37402827
Alignment:
Q  478 tatataaagggtcctactaaccggtgtc-tccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||| |||||| | |||||||||| | || |||||||||||||||||| || |||||| |||| ||||||||||||    
T  37402751 tatatatagggtcatgctaaccggtgccctcggggcactggttaagcata-caaaaaaggaaattcttaccataaaag 37402827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 512 - 553
Target Start/End: Complemental strand, 46149098 - 46149057
Alignment:
Q  512 cactggttaagcatatcataaaagggaattattaccataaaa 553  Q
    |||||||||| |||| |||||||| |||||||||||||||||    
T  46149098 cactggttaaacataccataaaagagaattattaccataaaa 46149057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 553
Target Start/End: Original strand, 54945780 - 54945846
Alignment:
Q  486 gggtcctactaaccggtgtctccgg-gcactggttaagcatatcataaaagggaattattaccataaaa 553  Q
    ||||||| ||||||||||| ||||| |||||||||||| ||| ||||||| ||||||| ||||||||||    
T  54945780 gggtcctgctaaccggtgt-tccggagcactggttaagtataccataaaaaggaatta-taccataaaa 54945846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 5694509 - 5694438
Alignment:
Q  484 aagggtcctactaaccggtgtctccgg-gcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| |||||||||| | |||| |||||||||||||||| |||||||||||||||||||||||||||    
T  5694509 aagggtcctgctaaccggtgcccccggagcactggttaagcataccataaaagggaattattaccataaaag 5694438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 15227927 - 15227856
Alignment:
Q  484 aagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| | |||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  15227927 aagggtcttgctaaccggtgcctccggggcactggttaagcataccataaaagggaattattaccataaaag 15227856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 485 - 554
Target Start/End: Original strand, 19031814 - 19031884
Alignment:
Q  485 agggtcctactaaccggtgtctccgggc-actggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||| ||||||||||||||||||  || ||||||||||||||||||||| |||||||||||||||||    
T  19031814 agggtcctgctaaccggtgtctccggggtacgggttaagcatatcataaaaggaaattattaccataaaag 19031884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 481 - 553
Target Start/End: Original strand, 30294376 - 30294449
Alignment:
Q  481 ataaagggtcctactaaccggtgtctccgg-gcactggttaagcatatcataaaagggaattattaccataaaa 553  Q
    |||| ||||||| |||||||||||| |||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  30294376 ataatgggtcctgctaaccggtgtccccggagcacaggttaagcataccataaaagggaattattaccataaaa 30294449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 486 - 554
Target Start/End: Original strand, 19010687 - 19010756
Alignment:
Q  486 gggtcctactaaccggtgtctcc--gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||||||||||||| |||  ||||||||||||| |||| |||||||||||||||||||||||||||    
T  19010687 gggtcctactaaccggtgt-tcctggggcactggttaatcataccataaaagggaattattaccataaaag 19010756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 29657959 - 29657888
Alignment:
Q  484 aagggtcctactaaccggtgtctcc-gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| |||||||||| | || |||||||||||||||||| ||||||||||||||||||||| |||||    
T  29657959 aagggtcctgctaaccggtgcccccagggcactggttaagcataccataaaagggaattattaccaaaaaag 29657888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 484 - 554
Target Start/End: Original strand, 51065746 - 51065817
Alignment:
Q  484 aagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| |||||||||| | | ||| ||||||||||||||| |||||||||||||||||||||||||||    
T  51065746 aagggtcctgctaaccggtgcccctggggcactggttaagcataccataaaagggaattattaccataaaag 51065817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 484 - 553
Target Start/End: Original strand, 50128170 - 50128240
Alignment:
Q  484 aagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaa 553  Q
    ||||||||| ||||||||||| || ||| ||||||||||||||| |||||||| |||||||||||||||||    
T  50128170 aagggtcctgctaaccggtgtttctgggacactggttaagcataccataaaagagaattattaccataaaa 50128240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 487 - 554
Target Start/End: Complemental strand, 38163035 - 38162967
Alignment:
Q  487 ggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||| |||||||||| | ||||| ||| ||||||||||| |||||||||||||||||||||||||||    
T  38163035 ggtcctgctaaccggtgcccccggggcacgggttaagcataccataaaagggaattattaccataaaag 38162967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 483 - 554
Target Start/End: Complemental strand, 45431467 - 45431395
Alignment:
Q  483 aaagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||||  ||||||| ||||| ||| ||||||||||| |||||||||||| ||||||||||||||||||    
T  45431467 aaagggtcctgataaccggagtctctggggcactggttaagtatatcataaaagagaattattaccataaaag 45431395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 483 - 554
Target Start/End: Complemental strand, 47010182 - 47010110
Alignment:
Q  483 aaagggtcctactaaccggtgtctccgg-gcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||| |||||||||| | | || |||||||||||||||| |||||||| ||||||||||||||||||    
T  47010182 aaagggtcctgctaaccggtgcccctggagcactggttaagcataccataaaagagaattattaccataaaag 47010110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 3097844 - 3097776
Alignment:
Q  484 aagggtcctactaaccggtgtctccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| |||||||||||| |||   |||||||||||||| ||||||||| |||||||||||||||||    
T  3097844 aagggtcctgctaaccggtgtccccgt--actggttaagcataccataaaaggaaattattaccataaaag 3097776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 483 - 554
Target Start/End: Original strand, 14350276 - 14350346
Alignment:
Q  483 aaagggtcctactaaccggtgtctccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||| |||||||||| | | |||||||||||||||||| |||  ||||||||||||||||||||||    
T  14350276 aaagggtcctgctaaccggtgccccggggcactggttaagcataccat-taagggaattattaccataaaag 14350346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 18043350 - 18043279
Alignment:
Q  484 aagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| |||||||||| | ||||| ||||||||||||||| |||||||  ||||||||||||||||||    
T  18043350 aagggtcctgctaaccggtgcccccggggcactggttaagcataccataaaatagaattattaccataaaag 18043279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 485 - 554
Target Start/End: Original strand, 12072061 - 12072131
Alignment:
Q  485 agggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||| || |||||||||| | ||||| ||||||||||||||| ||||||| |||||||||||||||||||    
T  12072061 agggtgctgctaaccggtgcccccggggcactggttaagcataccataaaaaggaattattaccataaaag 12072131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 513 - 553
Target Start/End: Complemental strand, 6770495 - 6770455
Alignment:
Q  513 actggttaagcatatcataaaagggaattattaccataaaa 553  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  6770495 actggttaagcatatcataaaagggaattattatcataaaa 6770455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 510 - 554
Target Start/End: Original strand, 48383136 - 48383180
Alignment:
Q  510 ggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||| |||||||||||| |||||||||||||||||||||||||||    
T  48383136 ggcattggttaagcataccataaaagggaattattaccataaaag 48383180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 511 - 554
Target Start/End: Complemental strand, 12307077 - 12307034
Alignment:
Q  511 gcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||||||||| |||||||| ||||||||||||||||||    
T  12307077 gcactggttaagcataccataaaagagaattattaccataaaag 12307034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 486 - 552
Target Start/End: Complemental strand, 30657788 - 30657721
Alignment:
Q  486 gggtcctactaaccggtgtctccgggc-actggttaagcatatcataaaagggaattattaccataaa 552  Q
    ||||||| |||| ||||| |||||||  |||||||||||||| |||||||||||||||||| ||||||    
T  30657788 gggtcctgctaatcggtgcctccggggtactggttaagcataccataaaagggaattattatcataaa 30657721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 484 - 554
Target Start/End: Original strand, 42769988 - 42770059
Alignment:
Q  484 aagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||| || |||||||||| | ||||| ||||||||||||||| |||||||  ||||||||||||||||||    
T  42769988 aagggttctgctaaccggtgcccccggggcactggttaagcataccataaaatagaattattaccataaaag 42770059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 485 - 554
Target Start/End: Original strand, 3784712 - 3784782
Alignment:
Q  485 agggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||  |||||||||| | ||||| ||| ||||||||||| ||||||||| |||||||||||||||||    
T  3784712 agggtccggctaaccggtgcccccgggacacgggttaagcataccataaaaggaaattattaccataaaag 3784782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 486 - 554
Target Start/End: Original strand, 9266728 - 9266797
Alignment:
Q  486 gggtcctactaaccggtgtctccgg-gcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| ||||||||||  || || |||||||||||| ||| |||||||| ||||||||||||||||||    
T  9266728 gggtcctgctaaccggtgcttctggagcactggttaagtataccataaaagcgaattattaccataaaag 9266797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 509 - 554
Target Start/End: Original strand, 24178487 - 24178532
Alignment:
Q  509 gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||||||||||| ||||||| | |||||||||||||||||    
T  24178487 gggcactggttaagcataccataaaatgaaattattaccataaaag 24178532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 509 - 554
Target Start/End: Complemental strand, 41730470 - 41730425
Alignment:
Q  509 gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| |||||||||| |||||||||||||||||| ||||||||    
T  41730470 gggcacttgttaagcataccataaaagggaattattatcataaaag 41730425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 509 - 554
Target Start/End: Original strand, 45449268 - 45449313
Alignment:
Q  509 gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||||||| |||| ||||||||| |||||||||||||||||    
T  45449268 gggcactggttaaacataccataaaaggcaattattaccataaaag 45449313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 494 - 554
Target Start/End: Original strand, 47532679 - 47532740
Alignment:
Q  494 ctaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||||||| |||| || |||||||||||| ||||||||||||||||||  |||||||    
T  47532679 ctaaccggtgtcttcggggcattggttaagcataccataaaagggaattattattataaaag 47532740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 486 - 554
Target Start/End: Complemental strand, 30217946 - 30217879
Alignment:
Q  486 gggtcctactaaccggtgtctccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| ||||| |||| ||| |||||||| ||||||||| ||||||| | |||||||||||||||||    
T  30217946 gggtcctgctaacaggtgcctcggggcactg-ttaagcataccataaaaagaaattattaccataaaag 30217879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 510 - 554
Target Start/End: Original strand, 51368810 - 51368854
Alignment:
Q  510 ggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||||||||||| ||||||| ||||||||||| |||||||    
T  51368810 ggcactggttaagcataccataaaatggaattattactataaaag 51368854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 554
Target Start/End: Original strand, 38701934 - 38702002
Alignment:
Q  483 aaagggtcctactaaccggtgtc-tccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||| |||||||||| | || |||||||||||||||||| |||||    ||||||||||||||||||    
T  38701934 aaagggtcctgctaaccggtgccctcggggcactggttaagcataccataa----gaattattaccataaaag 38702002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 511 - 553
Target Start/End: Complemental strand, 13961371 - 13961329
Alignment:
Q  511 gcactggttaagcatatcataaaagggaattattaccataaaa 553  Q
    |||||||||||||||| ||||||||  ||||||||||||||||    
T  13961371 gcactggttaagcataccataaaagaaaattattaccataaaa 13961329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 549
Target Start/End: Complemental strand, 26228366 - 26228300
Alignment:
Q  484 aagggtcctactaaccggtgtctccgg-gcactggttaagcatatcataaaagggaattattaccat 549  Q
    ||||||| | |||||||||||| |||| | ||  |||||||||| ||||||||||||||||||||||    
T  26228366 aagggtcatgctaaccggtgtccccggagtaccagttaagcataccataaaagggaattattaccat 26228300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 512 - 554
Target Start/End: Original strand, 36446352 - 36446394
Alignment:
Q  512 cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||| |||| ||||||||||||||||||| |||||||    
T  36446352 cactggttaaacataccataaaagggaattattactataaaag 36446394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 512 - 554
Target Start/End: Complemental strand, 43286881 - 43286839
Alignment:
Q  512 cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||||||||| |||||||| |||||||||| |||||||    
T  43286881 cactggttaagcataccataaaagagaattattactataaaag 43286839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 554
Target Start/End: Original strand, 17333281 - 17333351
Alignment:
Q  483 aaagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||| |||||||||| ||||||| || ||||||||  || |||||||||||| ||||| ||||||||    
T  17333281 aaagggtcctgctaaccggtgcctccggggcattggttaag--taccataaaagggaagtattatcataaaag 17333351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 542
Target Start/End: Complemental strand, 28482029 - 28481973
Alignment:
Q  485 agggtcctactaaccggtgtctccgggcactggttaagcatatcataaaagggaatta 542  Q
    ||||||||||||||||||| | ||||| || ||||||||||| ||||||| |||||||    
T  28482029 agggtcctactaaccggtgcc-ccgggtacgggttaagcataccataaaaaggaatta 28481973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 554
Target Start/End: Original strand, 28725913 - 28725974
Alignment:
Q  494 ctaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||||| ||||| |||||||||||||||  | |||||| |||| ||||||||||||    
T  28725913 ctaaccggtgtccccggggcactggttaagcatacgaaaaaaggaaattcttaccataaaag 28725974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 512 - 553
Target Start/End: Complemental strand, 29683355 - 29683314
Alignment:
Q  512 cactggttaagcatatcataaaagggaattattaccataaaa 553  Q
    ||||||||||||||| |||||||| |||||||||| ||||||    
T  29683355 cactggttaagcataccataaaagtgaattattactataaaa 29683314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 554
Target Start/End: Original strand, 35985645 - 35985690
Alignment:
Q  509 gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||||||| |||  ||||| ||||||||||||||||||||    
T  35985645 gggcactggttaagtatactataaatgggaattattaccataaaag 35985690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 536
Target Start/End: Complemental strand, 29210581 - 29210529
Alignment:
Q  485 agggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagg 536  Q
    |||||||| |||||||||| | ||||| ||||||||||||||| |||||||||    
T  29210581 agggtcctgctaaccggtgcccccggggcactggttaagcataccataaaagg 29210529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 485 - 554
Target Start/End: Original strand, 34650832 - 34650902
Alignment:
Q  485 agggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||| |||||||||| | ||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  34650832 agggtcctgctaaccggtgcccccggggcactggttaagcataccataaaagggaattattaccataaaag 34650902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 485 - 554
Target Start/End: Complemental strand, 13661995 - 13661925
Alignment:
Q  485 agggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||| |||||||||| ||||||| ||| ||||||||||| |||||||| ||||||||||||||||||    
T  13661995 agggtcctgctaaccggtgcctccggggcacgggttaagcataccataaaagagaattattaccataaaag 13661925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 484 - 554
Target Start/End: Original strand, 35504239 - 35504309
Alignment:
Q  484 aagggtcctactaaccggtgtctccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| |||||||||| | |||| ||| ||||||||||| ||||||||||||||||| |||||||||    
T  35504239 aagggtcctgctaaccggtgcccccggacacgggttaagcataccataaaagggaattattgccataaaag 35504309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 476 - 554
Target Start/End: Complemental strand, 8787535 - 8787456
Alignment:
Q  476 attatataaagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||| |||||||||| |||||||||| | ||||| ||| ||||||||||| ||||||| |||||||||| ||||||||    
T  8787535 attataaaaagggtcctgctaaccggtgcccccggggcacaggttaagcataccataaaatggaattattatcataaaag 8787456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 554
Target Start/End: Original strand, 11957965 - 11958036
Alignment:
Q  484 aagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| |||||||||| | | ||| ||||||||||||||  |||||||||||||||||||||||||||    
T  11957965 aagggtcctgctaaccggtgcccctggggcactggttaagcatgccataaaagggaattattaccataaaag 11958036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 552
Target Start/End: Complemental strand, 35132711 - 35132640
Alignment:
Q  482 taaagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaa 552  Q
    ||||||||||| |||||||||| | ||||| || |||||||||||| |||||||| ||||||||||||||||    
T  35132711 taaagggtcctgctaaccggtgcccccggggcattggttaagcataccataaaagagaattattaccataaa 35132640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 513 - 554
Target Start/End: Complemental strand, 10956109 - 10956068
Alignment:
Q  513 actggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  10956109 actggttaagcatatcataaaaggaaattattaccataaaag 10956068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 494 - 554
Target Start/End: Complemental strand, 20175404 - 20175344
Alignment:
Q  494 ctaaccggtgtctccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||||| | | ||||| ||||||||||| ||||||||||||||||| ||||||||    
T  20175404 ctaaccggtgtcccagagcactagttaagcatattataaaagggaattattatcataaaag 20175344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 509 - 554
Target Start/End: Complemental strand, 6283724 - 6283679
Alignment:
Q  509 gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||||||||||| |||||||  ||||||||||||||||||    
T  6283724 gggcactggttaagcataccataaaaatgaattattaccataaaag 6283679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 509 - 554
Target Start/End: Complemental strand, 11846234 - 11846189
Alignment:
Q  509 gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||||||||||||  |||||||||| |||||||||||||||    
T  11846234 gggcactggttaagcatactataaaagggatttattaccataaaag 11846189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 486 - 545
Target Start/End: Original strand, 21547394 - 21547454
Alignment:
Q  486 gggtcctactaaccggtgtctcc-gggcactggttaagcatatcataaaagggaattatta 545  Q
    ||||||| ||||||||||||||| ||| |||||||||||||| |||||| | |||||||||    
T  21547394 gggtcctgctaaccggtgtctccggggtactggttaagcataccataaatgagaattatta 21547454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 553
Target Start/End: Original strand, 40564401 - 40564472
Alignment:
Q  483 aaagggtcctactaaccggtgtc-tccgggcactggttaagcatatcataaaagggaattattaccataaaa 553  Q
    |||||||||| |||||||||| | |  ||| | |||||||||||| |||||||| |||||||||||||||||    
T  40564401 aaagggtcctgctaaccggtgcccttggggtattggttaagcataccataaaagagaattattaccataaaa 40564472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 513 - 547
Target Start/End: Original strand, 2619596 - 2619630
Alignment:
Q  513 actggttaagcatatcataaaagggaattattacc 547  Q
    |||| ||||||||||||||||||||||||||||||    
T  2619596 actgattaagcatatcataaaagggaattattacc 2619630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 543
Target Start/End: Original strand, 10955975 - 10956009
Alignment:
Q  509 gggcactggttaagcatatcataaaagggaattat 543  Q
    |||||||||||||||||| ||||||||||||||||    
T  10955975 gggcactggttaagcataccataaaagggaattat 10956009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 554
Target Start/End: Original strand, 10054377 - 10054422
Alignment:
Q  509 gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||| |||||| |||| ||||||| |||||||||||||||||||    
T  10054377 gggcacgggttaaacataccataaaaaggaattattaccataaaag 10054422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 554
Target Start/End: Complemental strand, 12506458 - 12506413
Alignment:
Q  509 gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||||||||||  |||||||| |||||||||| |||||||    
T  12506458 gggcactggttaagcattccataaaagagaattattactataaaag 12506413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 554
Target Start/End: Complemental strand, 40057493 - 40057424
Alignment:
Q  486 gggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| |||||||||| |||  || |||||||||| || |||||||||||||| |||||| |||||||    
T  40057493 gggtcctgctaaccggtgcctcgaggtcactggttaaacacatcataaaagggaaatattactataaaag 40057424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 554
Target Start/End: Complemental strand, 4268750 - 4268678
Alignment:
Q  483 aaagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||| |||||||||||| | || || ||| ||||||||||| || |||||  |||||||||||||||||    
T  4268750 aaagggtcatactaaccggtgccccctggacacgggttaagcataccaaaaaagaaaattattaccataaaag 4268678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 554
Target Start/End: Complemental strand, 39069527 - 39069495
Alignment:
Q  522 gcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||||||| ||||||||||||||||||    
T  39069527 gcatatcataaaagagaattattaccataaaag 39069495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 481 - 554
Target Start/End: Complemental strand, 48725462 - 48725388
Alignment:
Q  481 ataaagggtcctactaaccggtg-tctccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||||| |||||| ||| || | |||||||||||||||||| |||||||||||||||||||||||||||    
T  48725462 ataaagggtcctgctaacccgtggtcccggggcactggttaagcataccataaaagggaattattaccataaaag 48725388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 486 - 554
Target Start/End: Complemental strand, 46352820 - 46352751
Alignment:
Q  486 gggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| |||||||||| ||||||| ||| ||||||||||| |||||||||||||||||||||||||||    
T  46352820 gggtcctgctaaccggtgcctccggggcacgggttaagcataccataaaagggaattattaccataaaag 46352751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 39074606 - 39074535
Alignment:
Q  484 aagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| |||||||||| | | ||| ||||||||||||||| |||||||||||||||||||||||||||    
T  39074606 aagggtcctgctaaccggtgcccctggggcactggttaagcataccataaaagggaattattaccataaaag 39074535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 494 - 553
Target Start/End: Complemental strand, 42548272 - 42548213
Alignment:
Q  494 ctaaccggtgtctccgggcactggttaagcatatcataaaagggaattattaccataaaa 553  Q
    |||||||||||| | | |||||||||||||||| ||||||||||||||||||||||||||    
T  42548272 ctaaccggtgtcccggagcactggttaagcataccataaaagggaattattaccataaaa 42548213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 486 - 554
Target Start/End: Original strand, 10617284 - 10617353
Alignment:
Q  486 gggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| |||||||||| | ||||| ||| ||||||||||| |||||||||||||||||||||||||||    
T  10617284 gggtcctgctaaccggtgcccccggggcacgggttaagcataccataaaagggaattattaccataaaag 10617353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 494 - 554
Target Start/End: Complemental strand, 41304181 - 41304120
Alignment:
Q  494 ctaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||||||||||| || |||||||||||| ||||||||| |||||||||||||||||    
T  41304181 ctaaccggtgtctccggggcattggttaagcataccataaaaggaaattattaccataaaag 41304120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 483 - 554
Target Start/End: Complemental strand, 52520870 - 52520798
Alignment:
Q  483 aaagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||| |||||||||| | ||||| ||||||||||||||| |||||||  ||||||||||||||||||    
T  52520870 aaagggtcctgctaaccggtgcccccggggcactggttaagcataccataaaatagaattattaccataaaag 52520798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 554
Target Start/End: Original strand, 42964247 - 42964318
Alignment:
Q  484 aagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| |||||||||||| | | | |||||||||||||||||||||||| |||||||||| |||||||    
T  42964247 aagggtcctgctaaccggtgtccctgagacactggttaagcatatcataaaagtgaattattactataaaag 42964318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 43787059 - 43786988
Alignment:
Q  484 aagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| |||||||||| | ||||| ||||||||||||||| |||||||  ||||||||||||||||||    
T  43787059 aagggtcctgctaaccggtgcccccggggcactggttaagcataccataaaatagaattattaccataaaag 43786988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 554
Target Start/End: Original strand, 50395561 - 50395632
Alignment:
Q  484 aagggtcctactaaccggtgtctccgg-gcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| |||| |||||||||||| | |||| |||| ||||||||||||| ||||||||||||||||||    
T  50395561 aagggtcctgctaatcggtgtctccggtgtactgattaatcatatcataaaagagaattattaccataaaag 50395632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 477 - 554
Target Start/End: Complemental strand, 6842814 - 6842736
Alignment:
Q  477 ttatataaagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||| ||| ||||||| ||||||| || | ||||| ||||||||||||||| |||||| ||||||||||||||||||||    
T  6842814 ttatttaatgggtcctgctaaccgctgcccccggggcactggttaagcataccataaatgggaattattaccataaaag 6842736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 486 - 554
Target Start/End: Complemental strand, 272406 - 272337
Alignment:
Q  486 gggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| |||||||||| | ||||| ||| | ||||||||| |||||||||||||||||||||||||||    
T  272406 gggtcctgctaaccggtgcccccggggcaccgattaagcataccataaaagggaattattaccataaaag 272337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 509 - 554
Target Start/End: Complemental strand, 2505511 - 2505466
Alignment:
Q  509 gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||    
T  2505511 gggcactggttaaacataccataaaagggaattattaccataaaag 2505466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 513 - 554
Target Start/End: Complemental strand, 33141043 - 33141002
Alignment:
Q  513 actggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  33141043 actgattaagcatatcataaaagggaattattaccataaaag 33141002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 509 - 554
Target Start/End: Original strand, 40362604 - 40362649
Alignment:
Q  509 gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||    
T  40362604 gggcactggttaagcataccataaaagagaattattaccataaaag 40362649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 509 - 554
Target Start/End: Complemental strand, 49893493 - 49893448
Alignment:
Q  509 gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||    
T  49893493 gggcactgattaagcataccataaaagggaattattaccataaaag 49893448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 4168371 - 4168300
Alignment:
Q  484 aagggtcctactaaccggtgtctccgggc-actggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| |||||||||| | |||||  || ||||||||||| |||||||| ||||||||||||||||||    
T  4168371 aagggtcctgctaaccggtgcccccggggtacgggttaagcataccataaaagagaattattaccataaaag 4168300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 485 - 554
Target Start/End: Complemental strand, 858776 - 858706
Alignment:
Q  485 agggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||  |||||||||| | ||||| ||| ||||||||||| ||||||||| |||||||||||||||||    
T  858776 agggtccggctaaccggtgcccccggggcacgggttaagcataccataaaaggaaattattaccataaaag 858706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 485 - 554
Target Start/End: Original strand, 43269738 - 43269808
Alignment:
Q  485 agggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||| |||||||||| ||||||| ||||||||||||||| |||||| |  ||||||||| |||||||    
T  43269738 agggtcctgctaaccggtgcctccggggcactggttaagcataccataaaggataattattactataaaag 43269808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 485 - 553
Target Start/End: Original strand, 2938039 - 2938108
Alignment:
Q  485 agggtcctactaaccggtgtc-tccgggcactggttaagcatatcataaaagggaattattaccataaaa 553  Q
    |||||||| |||||||||| | || ||| ||| |||||||||| |||||||| |||||||||||||||||    
T  2938039 agggtcctgctaaccggtgccctcggggtactcgttaagcataccataaaagtgaattattaccataaaa 2938108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 494 - 554
Target Start/End: Complemental strand, 28139487 - 28139426
Alignment:
Q  494 ctaaccggtgtctccgg-gcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||||||| | | |||||| ||||| ||| |||||||||||||||||||||||||||    
T  28139487 ctaaccggtgtcttcagagcactgtttaagtataccataaaagggaattattaccataaaag 28139426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 510 - 554
Target Start/End: Original strand, 49529291 - 49529335
Alignment:
Q  510 ggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||||| |||| ||||||||| |||||||||||||||||    
T  49529291 ggcactggttaaacataccataaaaggaaattattaccataaaag 49529335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 494 - 554
Target Start/End: Complemental strand, 52552650 - 52552590
Alignment:
Q  494 ctaaccggtgtctccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| |||| |||| ||||||||||  ||| |||||||| ||||||||||||||||||    
T  52552650 ctaaccgatgtccccggacactggttaaatataccataaaagagaattattaccataaaag 52552590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 511 - 553
Target Start/End: Complemental strand, 24488526 - 24488484
Alignment:
Q  511 gcactggttaagcatatcataaaagggaattattaccataaaa 553  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||    
T  24488526 gcactagttcagcatatcataaaagagaattattaccataaaa 24488484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 554
Target Start/End: Complemental strand, 7468595 - 7468528
Alignment:
Q  486 gggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| |||||||||| ||||||| ||||| ||||||||| |||||||||| ||||||| ||||||||    
T  7468595 gggtcctgctaaccggtg-ctccggggcactgattaagcataccataaaaggg-attattatcataaaag 7468528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 554
Target Start/End: Original strand, 11308235 - 11308279
Alignment:
Q  509 gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||| |||||||||||| ||||||| |||||||||||||||||||    
T  11308235 gggcattggttaagcataccataaaa-ggaattattaccataaaag 11308279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 554
Target Start/End: Complemental strand, 20924173 - 20924109
Alignment:
Q  489 tcctactaaccggtgtctccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||| |||||||||| ||| || ||||||||||| ||| |||||||| ||||||||||| ||||||    
T  20924173 tcctgctaaccggtg-ctcaggacactggttaagtataccataaaagagaattattaccttaaaag 20924109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 554
Target Start/End: Original strand, 41553940 - 41554009
Alignment:
Q  486 gggtcctactaaccggtgtctcc-gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||||| ||||||  || ||||||| |||||||||| |||||||   |||||||||||||||||    
T  41553940 gggtcctactaatcggtgttcccagggcacttgttaagcataccataaaaaataattattaccataaaag 41554009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 486 - 554
Target Start/End: Complemental strand, 41105 - 41036
Alignment:
Q  486 gggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| | |||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||    
T  41105 gggtcctgccaaccggtgtctccgggacactggttaagcatatcataaaaggaaattattatcataaaag 41036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 509 - 554
Target Start/End: Complemental strand, 15058 - 15013
Alignment:
Q  509 gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  15058 gggcactggttaagcataccataaaagggaattattaccataaaag 15013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 25906 - 25835
Alignment:
Q  484 aagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||||||||| ||| || |||| ||||| ||||| ||| |||||||||||||||||||||||||||    
T  25906 aagggtcctactaacctgtgccttcgggtcactgtttaaggataccataaaagggaattattaccataaaag 25835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 477 - 554
Target Start/End: Complemental strand, 10905 - 10827
Alignment:
Q  477 ttatataaagggtcctactaaccggtgtctccg-ggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||| ||| ||||||| ||||||| || | ||| ||||||||||||||||| |||||| ||||||||||||||||||||    
T  10905 ttatttaatgggtcctgctaaccgctgcccccgaggcactggttaagcataccataaatgggaattattaccataaaag 10827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 484 - 554
Target Start/End: Original strand, 6108 - 6179
Alignment:
Q  484 aagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||||| |||||||||| | ||||| ||| |||||| |||| |||||||||| ||||||||||||||||    
T  6108 aagggtcctgctaaccggtgcccccggggcacgggttaaacataccataaaaggggattattaccataaaag 6179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 509 - 554
Target Start/End: Complemental strand, 987 - 942
Alignment:
Q  509 gggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||||||||||| |||||||| |||||||||| |||||||    
T  987 gggcactggttaagcataccataaaagagaattattactataaaag 942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 513 - 554
Target Start/End: Original strand, 68318 - 68359
Alignment:
Q  513 actggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||||||| |||||||||||||||||||| ||||||    
T  68318 actggttaagcataccataaaagggaattattaccttaaaag 68359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 476 - 554
Target Start/End: Complemental strand, 116400 - 116321
Alignment:
Q  476 attatataaagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||| ||||||||| || ||||||||| || | ||| ||| |||||| |||| |||||||||||||||||| ||||||||    
T  116400 attaaataaagggtactgctaaccggtatccctggggcacgggttaaacataccataaaagggaattattatcataaaag 116321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 554
Target Start/End: Original strand, 53683 - 53754
Alignment:
Q  484 aagggtcctactaaccggtgtctccgggca-ctggttaagcatatcataaaagggaattattaccataaaag 554  Q
    ||||||| | |||||||||| | ||||| | | |||||| |||| |||||||||||||||||||||||||||    
T  53683 aagggtcttgctaaccggtgcccccggggaacgggttaaacataccataaaagggaattattaccataaaag 53754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 554
Target Start/End: Complemental strand, 23148 - 23078
Alignment:
Q  485 agggtcctactaaccggtgtc-tccgggcactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||| | |||||||||||| |  ||||||||||||| |||| |||||||| ||||||||| ||||||||    
T  23148 agggtcttgctaaccggtgtccttggggcactggttaaacataccataaaagagaattattaacataaaag 23078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 516 - 554
Target Start/End: Original strand, 95616 - 95654
Alignment:
Q  516 ggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  95616 ggttaaacataccataaaagggaattattaccataaaag 95654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1152 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1152
Description:

Target: scaffold1152; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 554
Target Start/End: Complemental strand, 863 - 795
Alignment:
Q  486 gggtcctactaaccggtgtctccgggc-actggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||||||||||||| | |||||| | | |||||||||| |||||||| ||||||| ||||||||||    
T  863 gggtcctactaaccggtg-ccccgggctattagttaagcataccataaaagagaattatcaccataaaag 795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 554
Target Start/End: Original strand, 19574 - 19654
Alignment:
Q  475 tattatataaagggtcctactaaccggtgtctccggg-cactggttaagcatatcataaaagggaattattaccataaaag 554  Q
    |||||||| | ||||||| |||||||| || |||||| ||||| |||| ||||||||||||| ||| ||||| | ||||||    
T  19574 tattatattatgggtcctgctaaccggagtttccgggacactgattaatcatatcataaaagagaactattatcgtaaaag 19654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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