View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3787_high_5 (Length: 419)

Name: NF3787_high_5
Description: NF3787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3787_high_5
NF3787_high_5
[»] chr2 (3 HSPs)
chr2 (11-419)||(23750610-23751018)
chr2 (11-419)||(22618003-22618411)
chr2 (11-419)||(23851311-23851719)


Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 11 - 419
Target Start/End: Original strand, 23750610 - 23751018
Alignment:
Q  11 cataggctagtgacttgggaaaatttatttcagaaaacatgcatttcaaatggttgagagacaagtctaaattgcgcaggttcaaaagttgaccgaaact 110  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23750610 cataggctagtgacttgggaaattttatttcagaaaacatgcatttcaaatggttgagagacaagtctaaattgcgcaggttcaaaagttgaccgaaact 23750709  T
Q  111 atcaggaaatttcccttgaaaattattttgactaaggtaaagggtgtgcaattttgaaagtcgaccaatattttgtgggattgtgccattcagaaagttt 210  Q
    ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23750710 atcgggaaatttcccttgaaaattattttgacaaaggtaaagggtgtgcaattttgaaagtcgaccaatattttgtgggattgtgccattcagaaagttt 23750809  T
Q  211 tctgacacatcaaggttttctaggctgactaattgctcaagacttctaggaatgacaccataaaaatgattagaagaaataatcaaggtgtttagactga 310  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23750810 tctgacacatcaaggttttcaaggctgactaattgctcaagactcctaggaatgacaccataaaaatgattagaagaaataatcaaggtgtttagactga 23750909  T
Q  311 tgaattgtccaatacaattaggaagatatccggttaaattattattgttcagaatcaaatactttagattgacaagtgctgttatactacaaggaagacc 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23750910 tgaattgtccaatacaattaggaagatatccggttaaattattattgttcagaatcaaatactttagtttgacaagtgctgttatactacaaggaagacc 23751009  T
Q  411 cccaaacaa 419  Q
    |||||||||    
T  23751010 cccaaacaa 23751018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 11 - 419
Target Start/End: Original strand, 22618003 - 22618411
Alignment:
Q  11 cataggctagtgacttgggaaaatttatttcagaaaacatgcatttcaaatggttgagagacaagtctaaattgcgcaggttcaaaagttgaccgaaact 110  Q
    |||||||||||||||||||||| ||||||||||||||||||| || || || ||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  22618003 cataggctagtgacttgggaaattttatttcagaaaacatgccttccatattgtttagagacatgtctaaattgcgcaggttcaaaagttgaccaaaact 22618102  T
Q  111 atcaggaaatttcccttgaaaattattttgactaaggtaaagggtgtgcaattttgaaagtcgaccaatattttgtgggattgtgccattcagaaagttt 210  Q
    ||||||||||| |||||| || |||||||||||||| || ||||| ||||| ||||||||||||||||||||||| || ||||||||||||||| |||||    
T  22618103 atcaggaaattccccttgcaatttattttgactaagatagagggtttgcaaatttgaaagtcgaccaatattttggggtattgtgccattcagagagttt 22618202  T
Q  211 tctgacacatcaaggttttctaggctgactaattgctcaagacttctaggaatgacaccataaaaatgattagaagaaataatcaaggtgtttagactga 310  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22618203 tctgacacatcaaggttttctaggctgactaattgctcaagactcctaggaatgacaccataaaaatgattagaagaaataatcaaggtgtttagactga 22618302  T
Q  311 tgaattgtccaatacaattaggaagatatccggttaaattattattgttcagaatcaaatactttagattgacaagtgctgttatactacaaggaagacc 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22618303 tgaattgtccaatacaattaggaagatatccggttaaattattattgttcagaatcaaatactttagattgacaagtgctgttatactacaaggaagacc 22618402  T
Q  411 cccaaacaa 419  Q
    |||||||||    
T  22618403 cccaaacaa 22618411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 419
Target Start/End: Original strand, 23851311 - 23851719
Alignment:
Q  11 cataggctagtgacttgggaaaatttatttcagaaaacatgcatttcaaatggttgagagacaagtctaaattgcgcaggttcaaaagttgaccgaaact 110  Q
    ||||| |||||||| ||||||| ||||||||||||||| ||| || ||||| ||| |||||||||||||||||||| ||||||| |||||||||||||||    
T  23851311 catagactagtgacctgggaaattttatttcagaaaacgtgccttccaaattgtttagagacaagtctaaattgcgaaggttcagaagttgaccgaaact 23851410  T
Q  111 atcaggaaatttcccttgaaaattattttgactaaggtaaagggtgtgcaattttgaaagtcgaccaatattttgtgggattgtgccattcagaaagttt 210  Q
    || ||||||||||||||| ||||| |||| || ||  |||||||| || || ||||||||| |||||| ||||||||||||||| ||||||||||||||     
T  23851411 atgaggaaatttcccttgcaaattgtttttacaaatataaagggtatgtaaatttgaaagttgaccaacattttgtgggattgtaccattcagaaagttc 23851510  T
Q  211 tctgacacatcaaggttttctaggctgactaattgctcaagacttctaggaatgacaccataaaaatgattagaagaaataatcaaggtgtttagactga 310  Q
    ||||| ||||||||| ||| |||  | |||| || | ||| ||| |||||||| ||||||| ||||| ||||||||||||||| ||||| |||||| |||    
T  23851511 tctgagacatcaagggtttttagaataactagtttcccaatactcctaggaataacaccatcaaaattattagaagaaataatgaaggtttttagattga 23851610  T
Q  311 tgaattgtccaatacaattaggaagatatccggttaaattattattgttcagaatcaaatactttagattgacaagtgctgttatactacaaggaagacc 410  Q
      |||||||||||||||| ||||||| | || || |||||||| |||||||||| |||||| ||||||||||||||| | || |||||||||||||||||    
T  23851611 caaattgtccaatacaatcaggaagagaacctgtcaaattattgttgttcagaaccaaataatttagattgacaagttcggtcatactacaaggaagacc 23851710  T
Q  411 cccaaacaa 419  Q
    |||||||||    
T  23851711 cccaaacaa 23851719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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