View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3787_high_6 (Length: 359)
Name: NF3787_high_6
Description: NF3787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3787_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 16 - 344
Target Start/End: Complemental strand, 14927149 - 14926821
Alignment:
| Q |
16 |
ataatgccacctagataataaaaatgaacacctctctggctgaaagttgcaccctaggccacaagcacgtgaatcacgaacaatgtagtcaaatctgcaa |
115 |
Q |
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| T |
14927149 |
ataatgcgacctagataataaaaatgaacacctctctggctgaaagttgcaccctaggccacaagcacgtgaatcacgaacaatgtagtcaaatctgcaa |
14927050 |
T |
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| Q |
116 |
attcttgaatttgttatggttctatgatcacaagattcggtatcaataatagtggcacatcaggaggaaaaaaggtgaaaagtatcaacttacttgtcaa |
215 |
Q |
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| T |
14927049 |
attcttgaatttgttatggttctatgatcacgagattcggtatcaataacagtggcacatcaggaggaaaaaaggtgaaaagtatcaacttacttgtcaa |
14926950 |
T |
|
| Q |
216 |
cgtcaattccattgcgaccgtttgcaacaatatcatataagaacttcttctcctgttatgtaggagaaaattttgaagcaaatcagtataataacattgt |
315 |
Q |
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| T |
14926949 |
cgtcaattccattgcgaccgtttgcaacaatatcatataagaacttcttctcctgttatgtaggagaaaattttgaagcaaatcagtataataacattgt |
14926850 |
T |
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| Q |
316 |
taaagaaagtggtatggcataaatgaagt |
344 |
Q |
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| T |
14926849 |
taaagaaagtggtatggcataaatgaagt |
14926821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 258
Target Start/End: Complemental strand, 1528352 - 1528297
Alignment:
| Q |
203 |
acttacttgtcaacgtcaattccattgcgaccgtttgcaacaatatcatataagaa |
258 |
Q |
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| T |
1528352 |
acttacttgtcaacatcgattccatttcgtccatttgcaacaatatcatacaagaa |
1528297 |
T |
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