View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3787_high_8 (Length: 313)

Name: NF3787_high_8
Description: NF3787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3787_high_8
NF3787_high_8
[»] chr3 (14 HSPs)
chr3 (19-307)||(2636178-2636466)
chr3 (20-223)||(7323822-7324025)
chr3 (60-225)||(2502586-2502751)
chr3 (47-235)||(2658582-2658772)
chr3 (19-215)||(767670-767866)
chr3 (19-185)||(2643793-2643959)
chr3 (128-225)||(7318340-7318437)
chr3 (44-145)||(2477107-2477208)
chr3 (19-191)||(9594029-9594202)
chr3 (44-139)||(746125-746220)
chr3 (52-216)||(9561372-9561548)
chr3 (144-193)||(7333796-7333845)
chr3 (26-93)||(7318434-7318501)
chr3 (174-224)||(7442466-7442515)
[»] scaffold0097 (2 HSPs)
scaffold0097 (19-135)||(34360-34476)
scaffold0097 (160-200)||(34469-34509)
[»] chr2 (2 HSPs)
chr2 (29-97)||(33027115-33027183)
chr2 (29-86)||(33038687-33038744)


Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 2636178 - 2636466
Alignment:
Q  19 cttgcactatattttaaataattcgcaatcatcaattgcattaaaaggtttgtcatttgattttctaagatttgcgttatgagttaggtgtaataatgcc 118  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2636178 cttgcactatattttaaatagttcgcaatcatcaattgcattaaaaggtttgtcatttgattttctaagatttgcgttatgagttaggtgtaataatgcc 2636277  T
Q  119 tgcttagtgttgcacaaattttttaatgtttgtttcaaatattgcacaatggattatgaactaaactgaatatgtcatataatactattgtgatgtcagt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2636278 tgcttagtgttgcacaaattttttaatgtttgtttcaaatattgcacaatggattatgaactaaactgaatatgtcatataatactattgtgatgtcagt 2636377  T
Q  219 ttttaaggaagataattcatttgtttattgtaatgtcttctctccgacccaatcttctgtaccaccgacgattttttcttttctctgct 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  2636378 ttttaaggaagataattcatttgtttattgtaatgtcttctctccaacccaatcttctgtaccaccgacgattttttcttttgtctgct 2636466  T

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Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 7324025 - 7323822
Alignment:
Q  20 ttgcactatattttaaataattcgcaatcatcaattgcattaaaaggtttgtcatttgattttctaagatttgcgttatgagttaggtgtaataatgcct 119  Q
    ||||| ||||||||||||| |||  |||||   |||| |||||| | ||||||||| |||||||||||||||||||||||| |||| |||||||||| ||    
T  7324025 ttgcattatattttaaatagttcaaaatcaaatattgtattaaatgctttgtcattcgattttctaagatttgcgttatgatttagatgtaataatgtct 7323926  T
Q  120 gcttagtgttgcacaaattttttaatgtttgtttcaaatattgcacaatggattatgaactaaactgaatatgtcatataatactattgtgatgtcagtt 219  Q
    |||| |||||| ||||| ||||||||||||| ||||||| |||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||| ||    
T  7323925 gcttggtgttgaacaaaatttttaatgtttgcttcaaatcttgcacaatgcattatgaactaaactaaatatgttatataatactattgtgatgtcattt 7323826  T
Q  220 ttta 223  Q
    ||||    
T  7323825 ttta 7323822  T

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Target: chr3; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 60 - 225
Target Start/End: Original strand, 2502586 - 2502751
Alignment:
Q  60 taaaaggtttgtcatttgattttctaagatttgcgttatgagttaggtgtaataatgcctgcttagtgttgcacaaattttttaatgtttgtttcaaata 159  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||  |||||| |||||||||| |  |||||||||||| |||||||     
T  2502586 taaaaggtttgtcatttgattttctaagatttgcgttatgatttagatgtaataatttctgcttggtgttgcacagaaattttaatgtttgcttcaaatc 2502685  T
Q  160 ttgcacaatggattatgaactaaactgaatatgtcatataatactattgtgatgtcagtttttaag 225  Q
    |||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| ||| ||||    
T  2502686 ttgcacaatgcattatgaactaaactgaatatgttatataatattattgtgatgtcattttctaag 2502751  T

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Target: chr3; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 47 - 235
Target Start/End: Complemental strand, 2658772 - 2658582
Alignment:
Q  47 tcatcaattgcattaaaaggtttgtcatttgatttt-ctaagatttgcgttatgagttaggtgtaataatgcctgcttagtgttgcacaaattttttaat 145  Q
    |||| |||| ||||||| ||||||||||| |||||| |||||||||||||||||| |||| |||||||||| |||||||||||||||||||| |||||||    
T  2658772 tcatgaattacattaaatggtttgtcattggatttttctaagatttgcgttatgaattagatgtaataatgtctgcttagtgttgcacaaatgttttaat 2658673  T
Q  146 gtttgtttcaaatattgcacaatggattatgaactaaactgaatatgtcatataatactattgtgatgtca-gtttttaaggaagataatt 235  Q
    ||||| ||||||| ||||||| || ||||||||| ||||||||||||| |||||| ||||||||||||| |  ||||||| ||||||||||    
T  2658672 gtttgcttcaaatcttgcacactgcattatgaaccaaactgaatatgttatataacactattgtgatgtaatttttttaaagaagataatt 2658582  T

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Target: chr3; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 767866 - 767670
Alignment:
Q  19 cttgcactatattttaaataattcgcaatcatcaattgcattaaaaggtttgtcatttgattttctaagatttgcgttatgagttaggtgtaataatgcc 118  Q
    |||||||||||||||||||  ||| ||||||| |||||||||||| || |||||||||||||||||||||| || ||||||   ||| ||| | |||| |    
T  767866 cttgcactatattttaaattgttcacaatcatgaattgcattaaatggattgtcatttgattttctaagatatgtgttatggtgtagatgttacaatgtc 767767  T
Q  119 tgcttagtgttgcacaaattttttaatgtttgtttcaaatattgcacaatggattatgaactaaactgaatatgtcatataatactattgtgatgtc 215  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||| |||  ||||| ||| |||||| |||||| | | |||||||||| ||||||    
T  767766 tgcttagtgttgcacaaatttcttaatgtttgtttcaaatcttgcagaatacattataaacaaaactggatatgttacagaatactattgcgatgtc 767670  T

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Target: chr3; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 2643959 - 2643793
Alignment:
Q  19 cttgcactatattttaaataattcgcaatcatcaattgcattaaaaggtttgtcatttgattttctaagatttgcgttatgagttaggtgtaataatgcc 118  Q
    |||||||||||||||||||| ||||||||||| |||||||| |||| ||||||||||||||||||||||||| ||| || ||  ||| ||| | |||| |    
T  2643959 cttgcactatattttaaatagttcgcaatcattaattgcatcaaaatgtttgtcatttgattttctaagattcgcgataagatgtagatgttacaatgtc 2643860  T
Q  119 tgcttagtgttgcacaaattttttaatgtttgtttcaaatattgcacaatggattatgaactaaact 185  Q
     ||||||||||||| |||||| |||||||||| ||||||| |||||||||| |||||||||| ||||    
T  2643859 cgcttagtgttgcataaatttcttaatgtttgcttcaaatcttgcacaatgcattatgaactgaact 2643793  T

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Target: chr3; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 128 - 225
Target Start/End: Complemental strand, 7318437 - 7318340
Alignment:
Q  128 ttgcacaaattttttaatgtttgtttcaaatattgcacaatggattatgaactaaactgaatatgtcatataatactattgtgatgtcagtttttaag 225  Q
    ||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||    
T  7318437 ttgcacaaattttttaatgtttgcttcaaatcttgcacaatgcattatgaactaaactgaatatgttatataatactattgtgatgtcattttctaag 7318340  T

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Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 145
Target Start/End: Original strand, 2477107 - 2477208
Alignment:
Q  44 caatcatcaattgcattaaaaggtttgtcatttgattttctaagatttgcgttatgagttaggtgtaataatgcctgcttagtgttgcacaaatttttta 143  Q
    ||||||| |||||| |||||  ||||||||||||||||||||||||||||||||||   ||| ||| |||||| |||||||||||||||||||||| |||    
T  2477107 caatcatgaattgctttaaattgtttgtcatttgattttctaagatttgcgttatggtgtagatgttataatgtctgcttagtgttgcacaaatttctta 2477206  T
Q  144 at 145  Q
    ||    
T  2477207 at 2477208  T

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Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 9594202 - 9594029
Alignment:
Q  19 cttgcactatattttaaataattcgcaatcatcaattgcattaaaaggtttgtcatttgattttctaagatttgcgttatgagttaggtgtaataatgcc 118  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||||  ||||||||||| |||||||||||| |  ||||||   ||| ||| | |||| |    
T  9594202 cttgcactatattttaaatagttcacaatcatgaattgcattaaatagtttgtcatttcattttctaagatatctgttatggtgtagatgttacaatgtc 9594103  T
Q  119 tgcttag-tgttgcacaaattttttaatgtttgtttcaaatattgcacaatggattatgaactaaactgaatat 191  Q
    | |||||  ||||||| ||||| |||||||||||||||||| ||||| |||  ||||| ||| |||||| ||||    
T  9594102 ttcttagacgttgcacgaatttcttaatgtttgtttcaaatcttgcagaatacattataaacaaaactggatat 9594029  T

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Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 139
Target Start/End: Complemental strand, 746220 - 746125
Alignment:
Q  44 caatcatcaattgcattaaaaggtttgtcatttgattttctaagatttgcgttatgagttaggtgtaataatgcctgcttagtgttgcacaaattt 139  Q
    ||||||| ||||||||| || |||||||||||||||||||||||||||||||||||   ||| ||| ||| ||  ||||||||| |||||||||||    
T  746220 caatcatgaattgcattgaatggtttgtcatttgattttctaagatttgcgttatggtgtagatgttatattgtatgcttagtgctgcacaaattt 746125  T

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Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 216
Target Start/End: Complemental strand, 9561548 - 9561372
Alignment:
Q  52 aattgcattaaaaggtttgtcatttgattttctaagatttgcgttatgagttaggtg--------taataatgcctgcttagtgttgcacaaatttttta 143  Q
    |||||||| ||| |||||||| ||||||||||||||||||| ||||||| |||| ||        | |||| |  ||||||||||||||||| ||| |||    
T  9561548 aattgcatgaaatggtttgtcttttgattttctaagatttgggttatgatttagatgttataaacttataaggtatgcttagtgttgcacaagtttctta 9561449  T
Q  144 atgtttgttt----caaatattgcacaatggattatgaactaaactgaatatgtcatataatactattgtgatgtca 216  Q
    ||||||||||    ||||| | | || ||| | |||||||| || | ||||||| ||||||||||||||||||||||    
T  9561448 atgtttgtttgctccaaatctcgtacgatgcactatgaactcaatttaatatgttatataatactattgtgatgtca 9561372  T

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Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 7333845 - 7333796
Alignment:
Q  144 atgtttgtttcaaatattgcacaatggattatgaactaaactgaatatgt 193  Q
    ||||||||||||||| || ||||||| |||||||||||||||||||||||    
T  7333845 atgtttgtttcaaatcttacacaatgcattatgaactaaactgaatatgt 7333796  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 7318501 - 7318434
Alignment:
Q  26 tatattttaaataattcgcaatcatcaattgcattaaaaggtttgtcatttgattttctaagatttgc 93  Q
    ||||||||||||| ||| ||||||   |||| |||| | ||||||||||| |||||||||||||||||    
T  7318501 tatattttaaatagttcacaatcaaatattgaattatatggtttgtcattcgattttctaagatttgc 7318434  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 7442515 - 7442466
Alignment:
Q  174 atgaactaaactgaatatgtcatataatactattgtgatgtcagtttttaa 224  Q
    |||||||||||||||||||| ||||||||||| ||||| |||| |||||||    
T  7442515 atgaactaaactgaatatgttatataatacta-tgtgaggtcactttttaa 7442466  T

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Target: scaffold0097 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 34360 - 34476
Alignment:
Q  19 cttgcactatattttaaataattcgcaatcatcaattgcattaaaaggtttgtcatttgattttctaagatttgcgttatgagttaggtgtaataatgcc 118  Q
    |||||||||||||||||||| ||| ||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||||||||| |    
T  34360 cttgcactatattttaaatagttcacaatcatgaattgcattaaatggtttgtcattggattttctaagatttgcgttatgaattagatgtaataatgtc 34459  T
Q  119 tgcttagtgttgcacaa 135  Q
    |||||||||||||||||    
T  34460 tgcttagtgttgcacaa 34476  T

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Target: scaffold0097; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 34469 - 34509
Alignment:
Q  160 ttgcacaatggattatgaactaaactgaatatgtcatataa 200  Q
    |||||||||| ||||||||| ||||||||||||| ||||||    
T  34469 ttgcacaatgcattatgaaccaaactgaatatgttatataa 34509  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 33027115 - 33027183
Alignment:
Q  29 attttaaataattcgcaatcatcaattgcattaaaaggtttgtcatttgattttctaagatttgcgtta 97  Q
    |||||||||| ||| |||| ||  ||||||||| | |||||||||||||||||||||| ||||| ||||    
T  33027115 attttaaatagttcacaattatatattgcattagatggtttgtcatttgattttctaaaatttgagtta 33027183  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 33038687 - 33038744
Alignment:
Q  29 attttaaataattcgcaatcatcaattgcattaaaaggtttgtcatttgattttctaa 86  Q
    |||||||||| ||| |||||||  |||| |||| | ||||||||||||||||||||||    
T  33038687 attttaaatagttcacaatcatatattgtattagatggtttgtcatttgattttctaa 33038744  T

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