View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3787_low_10 (Length: 309)
Name: NF3787_low_10
Description: NF3787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3787_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 49 - 292
Target Start/End: Original strand, 36733450 - 36733695
Alignment:
| Q |
49 |
agttttttccttcttatatac----gatacaattcagcagcgtaaccaacatattttcaattacttactacaacnnnnnnnnnggttacaataacatggt |
144 |
Q |
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| T |
36733450 |
agttttttccttcttatatacatacgatacaattcagcagcgtaaccaacatattttcaattacttactacta--aaaaaaaaggttacaataacatggt |
36733547 |
T |
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| Q |
145 |
tgattaccaaggttacatcttacttttcatcatatggctagtatcaacaatttttgtaaaagccatactcacaagaaaatacaagaaatcgaagttacct |
244 |
Q |
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| T |
36733548 |
tgattaccaaggttacatcttacttttcatcatatggctagtatcaacaatttttgtaaaagccatactcacaagaaaatacaagaaatcgaagttacct |
36733647 |
T |
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| Q |
245 |
ccaagtccattatctttaccaatcattggacatcttcaccttattggt |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36733648 |
ccaagtccattatctttaccaatcattggacatcttcaccttattggt |
36733695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 36733417 - 36733450
Alignment:
| Q |
1 |
taacgaatatgatcaaacacaaactacaatataa |
34 |
Q |
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| T |
36733417 |
taacgaatatgatcaaacacaaactacaatataa |
36733450 |
T |
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