View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3787_low_14 (Length: 285)
Name: NF3787_low_14
Description: NF3787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3787_low_14 |
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| [»] scaffold0084 (1 HSPs) |
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| [»] scaffold0046 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 43895271 - 43895011
Alignment:
| Q |
18 |
cacactaatcttactgatcttgaatcatgcataccaccaccatcacaatccctcttaaaactcatcaacatgttcaaagtccaaacctttcaattcaaat |
117 |
Q |
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| T |
43895271 |
cacactaatcttactgatcttgaatcatgcataccaccaccatcacaatccctcttaaaactcatcaacatgttcaaagtccaaacctttcaattcaaat |
43895172 |
T |
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| Q |
118 |
cttgactcaccgcttcttgaaaaaattgaaacta---nnnnnnnnnnngaatcagcaaaattgaaactgattgaattcaattgaggttgttgttggaacc |
214 |
Q |
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| T |
43895171 |
cttgactcaccgcttcttgaaaaaattgaaactattttttttttttttgaatcagcaaaattgaaactgattgaattcaattgaggttgttgttggaacc |
43895072 |
T |
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| Q |
215 |
ttggagaatgtttaatctgataattccgatggatgattttggtgctggtttttatcctttg |
275 |
Q |
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| T |
43895071 |
ttggagaatgtttaatccgataattccgatggatgattttggtgctggtttttatcctttg |
43895011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 34 - 275
Target Start/End: Original strand, 12178 - 12413
Alignment:
| Q |
34 |
atcttgaatcatgcataccaccaccatcacaatccctcttaaaactcatcaacatgttcaaagtccaaacctttcaattcaaatcttgactcaccgcttc |
133 |
Q |
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| T |
12178 |
atcttgaatcatgcataccaccaccaccacaatccctcttaaaactcatcaacatgttcaaagtccaaacctttcaattcaaatcttgactcaccacttc |
12277 |
T |
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| Q |
134 |
ttg-aaaaaattgaaact-annnnnnnnnnngaatcagcaaaattgaaactgattgaattcaattgaggttgttgttggaaccttggagaatgtttaatc |
231 |
Q |
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||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
12278 |
ttgaaaaaaattgaaactgattttgttttttgaatcagcaaaattgaaactgattgaattcaattgaggttgttg--------ttggagaatgtttaatc |
12369 |
T |
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| Q |
232 |
tgataattccgatggatgattttggtgctggtttttatcctttg |
275 |
Q |
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| T |
12370 |
cgataattccgatgggtgattttggtgctggtttttatcctttg |
12413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 34 - 150
Target Start/End: Complemental strand, 24459 - 24342
Alignment:
| Q |
34 |
atcttgaatcatgcataccaccaccatcacaatccctcttaaaactcatcaacatgttcaaagtccaaacctttcaattcaaatcttgactcaccgcttc |
133 |
Q |
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||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||| |
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| T |
24459 |
atcttgactcatgcataccaccaccaccacaatccctcttaaaactcatcaacatgttcaaagttcaaacctttcaattcaaatcttgactcatcacttc |
24360 |
T |
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| Q |
134 |
ttgaa-aaaattgaaact |
150 |
Q |
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| T |
24359 |
ttgaaaaaaattgaaact |
24342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 24318 - 24269
Alignment:
| Q |
226 |
ttaatctgataattccgatggatgattttggtgctggtttttatcctttg |
275 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24318 |
ttaatccgataattccgatgggtgattttggtgctggtttttatcctttg |
24269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 142
Target Start/End: Original strand, 17345792 - 17345900
Alignment:
| Q |
34 |
atcttgaatcatgcataccaccaccatcacaatccctcttaaaactcatcaacatgttcaaagtccaaacctttcaattcaaatcttgactcaccgcttc |
133 |
Q |
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||||||| ||| |||||||| ||||| |||||||||||||| ||| ||||||||||| || ||||||||||||| |||||||||||| ||||||| |||| |
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| T |
17345792 |
atcttgactcacgcataccatcaccaccacaatccctcttacaacacatcaacatgtccatagtccaaacctttgaattcaaatcttcactcaccacttc |
17345891 |
T |
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| Q |
134 |
ttgaaaaaa |
142 |
Q |
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||||||||| |
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| T |
17345892 |
ttgaaaaaa |
17345900 |
T |
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