View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3787_low_16 (Length: 239)
Name: NF3787_low_16
Description: NF3787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3787_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 22618616 - 22618838
Alignment:
| Q |
1 |
ttgatcattgaaattgttgttggtcatgtcaagttcctctaaaccagatccattgcatcctgcagattgtaaattaccgacgagtgcatctccttgaagt |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
22618616 |
ttgattattgaaattgttgttggtcatgtcaagttcctctaaaccagatccatttcatcttgcagattgtaaattaccgatgagtgcatctccttgaagt |
22618715 |
T |
|
| Q |
101 |
ctgtttccagacaaatctagtgacagaagctgacacatatttcctagcattgttggtatagaaccctcaatatggttcacatgattccatgaaatattaa |
200 |
Q |
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| T |
22618716 |
cggtttccagacaaatctagtgacagaagctgacacatatttcctagcattgttggtattgaaccctcaatatggttcacatgattccatgaaatattga |
22618815 |
T |
|
| Q |
201 |
ggtacaaaagactctctaaccca |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
22618816 |
ggtacaaaagactctctaaccca |
22618838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 23751223 - 23751445
Alignment:
| Q |
1 |
ttgatcattgaaattgttgttggtcatgtcaagttcctctaaaccagatccattgcatcctgcagattgtaaattaccgacgagtgcatctccttgaagt |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
23751223 |
ttgattattgaaattgttgttggtcatgtcaagttcctctaaaccagatccatttcatcttgcagattgtaaattaccgatgagtgcatctccttgaagt |
23751322 |
T |
|
| Q |
101 |
ctgtttccagacaaatctagtgacagaagctgacacatatttcctagcattgttggtatagaaccctcaatatggttcacatgattccatgaaatattaa |
200 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
23751323 |
cggtttccagacaaatctagtgacagaagctgacacatatttcctagcattgctggtatagaaccctcaatatggttcacatgattccatgaaatattga |
23751422 |
T |
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| Q |
201 |
ggtacaaaagactctctaaccca |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
23751423 |
ggtacaaaagactctctaaccca |
23751445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 63 - 224
Target Start/End: Complemental strand, 20573494 - 20573333
Alignment:
| Q |
63 |
cagattgtaaattaccgacgagtgcatctccttgaagtctgtttccagacaaatctagtgacagaagctgacacatatttcctagcattgttggtataga |
162 |
Q |
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|||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20573494 |
cagattttagattaccgacgagtgcatctccttcaagtctgtttccagacaaatctagtgacagaagctgacacatatttcctagcattgttggtataga |
20573395 |
T |
|
| Q |
163 |
accctcaatatggttcacatgattccatgaaatattaaggtacaaaagactctctaacccac |
224 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||| |
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| T |
20573394 |
accctcaatatggttcacatgattccatgaaatattgaggtacaaaatactctttaacccac |
20573333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 23851925 - 23852145
Alignment:
| Q |
2 |
tgatcattgaaattgttgttggtcatgtcaagttcctctaaaccagatccattgcatcctgcagattgtaaattaccgacgagtgcatctccttgaagtc |
101 |
Q |
| |
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||||||||||| ||||||||||||| || |||||| ||| || |||||||||||| | ||| | ||| || || || ||||| ||||||||||||| |
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| T |
23851925 |
tgatcattgaatttgttgttggtcaaatccagttccagcaaatcaaatccattgcatctcgtagaatttaagttgccaacaagtgcgtctccttgaagtc |
23852024 |
T |
|
| Q |
102 |
tgtttccagacaaatctagtgacagaagctgacacatatttcctagcattgttggtatagaaccctcaatatggttcacatgattccatgaaatattaag |
201 |
Q |
| |
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||||||||||||||||| ||||||||| |||||||||||||||| | |||||| |||||||||||||||||| |||||||||||||| | ||| || |
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| T |
23852025 |
cgtttccagacaaatctattgacagaagatgacacatatttcctaaaacaattggtaaagaaccctcaatatggtttacatgattccatgacagattgag |
23852124 |
T |
|
| Q |
202 |
gtacaaaagactctctaaccc |
222 |
Q |
| |
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|||||||| |||| |||||| |
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| T |
23852125 |
atacaaaaggctctttaaccc |
23852145 |
T |
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