View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3787_low_3 (Length: 469)
Name: NF3787_low_3
Description: NF3787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3787_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 107 - 460
Target Start/End: Complemental strand, 40654772 - 40654423
Alignment:
| Q |
107 |
caggagtttatattgagctatgtggttgctttaccatatacatgtgaatgtgaatgaattgcgaagggagaaacgagcttgtaaactgaccaagtacttt |
206 |
Q |
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| T |
40654772 |
caggagtttatattgagctatgtggttgctttaccatatacatgtgaatgtgaatggattgcgaagggagaaacgagcttgtaaactgaccaagtacttt |
40654673 |
T |
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| Q |
207 |
tcaagaatttccttttggaagtgttgttgggtcccgcttgatgaatgatgacacaatcactttcacttcgattgaaaaaatagagaaaagtgttttgtcc |
306 |
Q |
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| T |
40654672 |
tcaagaatttccttttggaagtgttg---ggtcccgcttgatgaatgatgacacaatcactttcacttcgattgaaaaaatagagaaaagtgttttgtcc |
40654576 |
T |
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| Q |
307 |
gattacttgacggtagatgtagcgccatgaaaagtcattatctcttgataacgatattgcttccattcacccatttcttttttggtttaatttgtataaa |
406 |
Q |
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| T |
40654575 |
gattacttgacggtagatgtagcgccatgaaaagtcattatctcttgataacgatattgcttccattcacccatttcttttttggtttaatttgtataaa |
40654476 |
T |
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| Q |
407 |
gggtataattattttctatacttgttgttatagtatcaactctcttagtataat |
460 |
Q |
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| T |
40654475 |
gggta-aattattttatatacttgttgttatagtatcaactctattagtataat |
40654423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 40654813 - 40654768
Alignment:
| Q |
16 |
cacttttgatgttaagcatgcaagataacgcactaataacccagga |
61 |
Q |
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| T |
40654813 |
cacttttgatgttaagcatgcaagataacgcactaataacccagga |
40654768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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