View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3787_low_6 (Length: 419)

Name: NF3787_low_6
Description: NF3787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3787_low_6
NF3787_low_6
[»] chr2 (3 HSPs)
chr2 (11-419)||(23750610-23751018)
chr2 (11-419)||(22618003-22618411)
chr2 (11-419)||(23851311-23851719)


Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 11 - 419
Target Start/End: Original strand, 23750610 - 23751018
Alignment:
Q  11 cataggctagtgacttgggaaaatttatttcagaaaacatgcatttcaaatggttgagagacaagtctaaattgcgcaggttcaaaagttgaccgaaact 110  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23750610 cataggctagtgacttgggaaattttatttcagaaaacatgcatttcaaatggttgagagacaagtctaaattgcgcaggttcaaaagttgaccgaaact 23750709  T
Q  111 atcaggaaatttcccttgaaaattattttgactaaggtaaagggtgtgcaattttgaaagtcgaccaatattttgtgggattgtgccattcagaaagttt 210  Q
    ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23750710 atcgggaaatttcccttgaaaattattttgacaaaggtaaagggtgtgcaattttgaaagtcgaccaatattttgtgggattgtgccattcagaaagttt 23750809  T
Q  211 tctgacacatcaaggttttctaggctgactaattgctcaagacttctaggaatgacaccataaaaatgattagaagaaataatcaaggtgtttagactga 310  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23750810 tctgacacatcaaggttttcaaggctgactaattgctcaagactcctaggaatgacaccataaaaatgattagaagaaataatcaaggtgtttagactga 23750909  T
Q  311 tgaattgtccaatacaattaggaagatatccggttaaattattattgttcagaatcaaatactttagattgacaagtgctgttatactacaaggaagacc 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23750910 tgaattgtccaatacaattaggaagatatccggttaaattattattgttcagaatcaaatactttagtttgacaagtgctgttatactacaaggaagacc 23751009  T
Q  411 cccaaacaa 419  Q
    |||||||||    
T  23751010 cccaaacaa 23751018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 11 - 419
Target Start/End: Original strand, 22618003 - 22618411
Alignment:
Q  11 cataggctagtgacttgggaaaatttatttcagaaaacatgcatttcaaatggttgagagacaagtctaaattgcgcaggttcaaaagttgaccgaaact 110  Q
    |||||||||||||||||||||| ||||||||||||||||||| || || || ||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  22618003 cataggctagtgacttgggaaattttatttcagaaaacatgccttccatattgtttagagacatgtctaaattgcgcaggttcaaaagttgaccaaaact 22618102  T
Q  111 atcaggaaatttcccttgaaaattattttgactaaggtaaagggtgtgcaattttgaaagtcgaccaatattttgtgggattgtgccattcagaaagttt 210  Q
    ||||||||||| |||||| || |||||||||||||| || ||||| ||||| ||||||||||||||||||||||| || ||||||||||||||| |||||    
T  22618103 atcaggaaattccccttgcaatttattttgactaagatagagggtttgcaaatttgaaagtcgaccaatattttggggtattgtgccattcagagagttt 22618202  T
Q  211 tctgacacatcaaggttttctaggctgactaattgctcaagacttctaggaatgacaccataaaaatgattagaagaaataatcaaggtgtttagactga 310  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22618203 tctgacacatcaaggttttctaggctgactaattgctcaagactcctaggaatgacaccataaaaatgattagaagaaataatcaaggtgtttagactga 22618302  T
Q  311 tgaattgtccaatacaattaggaagatatccggttaaattattattgttcagaatcaaatactttagattgacaagtgctgttatactacaaggaagacc 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22618303 tgaattgtccaatacaattaggaagatatccggttaaattattattgttcagaatcaaatactttagattgacaagtgctgttatactacaaggaagacc 22618402  T
Q  411 cccaaacaa 419  Q
    |||||||||    
T  22618403 cccaaacaa 22618411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 419
Target Start/End: Original strand, 23851311 - 23851719
Alignment:
Q  11 cataggctagtgacttgggaaaatttatttcagaaaacatgcatttcaaatggttgagagacaagtctaaattgcgcaggttcaaaagttgaccgaaact 110  Q
    ||||| |||||||| ||||||| ||||||||||||||| ||| || ||||| ||| |||||||||||||||||||| ||||||| |||||||||||||||    
T  23851311 catagactagtgacctgggaaattttatttcagaaaacgtgccttccaaattgtttagagacaagtctaaattgcgaaggttcagaagttgaccgaaact 23851410  T
Q  111 atcaggaaatttcccttgaaaattattttgactaaggtaaagggtgtgcaattttgaaagtcgaccaatattttgtgggattgtgccattcagaaagttt 210  Q
    || ||||||||||||||| ||||| |||| || ||  |||||||| || || ||||||||| |||||| ||||||||||||||| ||||||||||||||     
T  23851411 atgaggaaatttcccttgcaaattgtttttacaaatataaagggtatgtaaatttgaaagttgaccaacattttgtgggattgtaccattcagaaagttc 23851510  T
Q  211 tctgacacatcaaggttttctaggctgactaattgctcaagacttctaggaatgacaccataaaaatgattagaagaaataatcaaggtgtttagactga 310  Q
    ||||| ||||||||| ||| |||  | |||| || | ||| ||| |||||||| ||||||| ||||| ||||||||||||||| ||||| |||||| |||    
T  23851511 tctgagacatcaagggtttttagaataactagtttcccaatactcctaggaataacaccatcaaaattattagaagaaataatgaaggtttttagattga 23851610  T
Q  311 tgaattgtccaatacaattaggaagatatccggttaaattattattgttcagaatcaaatactttagattgacaagtgctgttatactacaaggaagacc 410  Q
      |||||||||||||||| ||||||| | || || |||||||| |||||||||| |||||| ||||||||||||||| | || |||||||||||||||||    
T  23851611 caaattgtccaatacaatcaggaagagaacctgtcaaattattgttgttcagaaccaaataatttagattgacaagttcggtcatactacaaggaagacc 23851710  T
Q  411 cccaaacaa 419  Q
    |||||||||    
T  23851711 cccaaacaa 23851719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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