View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3787_low_8 (Length: 317)
Name: NF3787_low_8
Description: NF3787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3787_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 9 - 301
Target Start/End: Complemental strand, 6469993 - 6469710
Alignment:
| Q |
9 |
agcagagaagaaaccaagaaagaagagagtggtgctgtggttaatattgatgaaggaatgaagagaatgatgtattattatcaatatcctccactttatg |
108 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6469993 |
agcaaagaagaaaccaagaaaaaagagagtggtgctgtggttaatattgatgaaggaatga---------tgtattattatcaatatcctccactttatg |
6469903 |
T |
|
| Q |
109 |
tgattgaacgtactccacctcttcaactattcagtgatgaaaatcctaatgcatgcagcatttcataaagtcatcatatgaataacagagagaacaatat |
208 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6469902 |
tgattgaacgtactccacctcctcaactattcagtgatgaaaatcctaatgcatgcagcatttcataaagtcatcatatgaataacagagagaacaatat |
6469803 |
T |
|
| Q |
209 |
gatattttttgtgttttgttgatggaatatgtagaggaaaaaatgtgcctaaatggaatcatcacatgatcataataagttgatcaatgatat |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6469802 |
gatattttttgtgttttgttgatggaatatgtagaggagaaaatgtgcctaaatggaatcatcacatgatgataataagttgatcaatgatat |
6469710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 9 - 301
Target Start/End: Original strand, 29282876 - 29283183
Alignment:
| Q |
9 |
agcagagaagaaaccaagaaagaagagagtggtgctg------tggttaatattgatgaag---gaatgaagagaatgatgtattattatcaatatcctc |
99 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
29282876 |
agcaaagaagaaaccaagaaagaagagagtggtgctactgctatggttaatattgatgaagaaggaatgaagagaatgatgtattattatcaatatcctc |
29282975 |
T |
|
| Q |
100 |
cactttatgtgattgaacgtactccacctcttcaactattcagtgatgaaaatcctaatgcatgcagcatttcataaag----tcatcatatgaataaca |
195 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| | |
|
|
| T |
29282976 |
cactttatgtgattgaacgtactccaccacctcaactattcagtgatgaaaatcctaatgcatgcatcatttcataaagtccatcatcatatgaataata |
29283075 |
T |
|
| Q |
196 |
gagagaacaatatgatatttttt--gtgttttgttgatggaatatgtagaggaaaaaatgtgcctaaatggaatcatcacatgatcataataagttgatc |
293 |
Q |
| |
|
||||||||||||||| ||||||| | ||||||||| ||||||||| ||||||||||||||| |||||||||||||||| |||| ||||| ||||||| |
|
|
| T |
29283076 |
gagagaacaatatgaaatttttttggagttttgttggtggaatatggagaggaaaaaatgtgtctaaatggaatcatcatgtgatgataatgagttgatt |
29283175 |
T |
|
| Q |
294 |
aatgatat |
301 |
Q |
| |
|
|||||||| |
|
|
| T |
29283176 |
aatgatat |
29283183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University