View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3787_low_9 (Length: 313)
Name: NF3787_low_9
Description: NF3787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3787_low_9 |
 | |
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| [»] scaffold0097 (2 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 14)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 2636178 - 2636466
Alignment:
| Q |
19 |
cttgcactatattttaaataattcgcaatcatcaattgcattaaaaggtttgtcatttgattttctaagatttgcgttatgagttaggtgtaataatgcc |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2636178 |
cttgcactatattttaaatagttcgcaatcatcaattgcattaaaaggtttgtcatttgattttctaagatttgcgttatgagttaggtgtaataatgcc |
2636277 |
T |
|
| Q |
119 |
tgcttagtgttgcacaaattttttaatgtttgtttcaaatattgcacaatggattatgaactaaactgaatatgtcatataatactattgtgatgtcagt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2636278 |
tgcttagtgttgcacaaattttttaatgtttgtttcaaatattgcacaatggattatgaactaaactgaatatgtcatataatactattgtgatgtcagt |
2636377 |
T |
|
| Q |
219 |
ttttaaggaagataattcatttgtttattgtaatgtcttctctccgacccaatcttctgtaccaccgacgattttttcttttctctgct |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
2636378 |
ttttaaggaagataattcatttgtttattgtaatgtcttctctccaacccaatcttctgtaccaccgacgattttttcttttgtctgct |
2636466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 7324025 - 7323822
Alignment:
| Q |
20 |
ttgcactatattttaaataattcgcaatcatcaattgcattaaaaggtttgtcatttgattttctaagatttgcgttatgagttaggtgtaataatgcct |
119 |
Q |
| |
|
||||| ||||||||||||| ||| ||||| |||| |||||| | ||||||||| |||||||||||||||||||||||| |||| |||||||||| || |
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|
| T |
7324025 |
ttgcattatattttaaatagttcaaaatcaaatattgtattaaatgctttgtcattcgattttctaagatttgcgttatgatttagatgtaataatgtct |
7323926 |
T |
|
| Q |
120 |
gcttagtgttgcacaaattttttaatgtttgtttcaaatattgcacaatggattatgaactaaactgaatatgtcatataatactattgtgatgtcagtt |
219 |
Q |
| |
|
|||| |||||| ||||| ||||||||||||| ||||||| |||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||| || |
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|
| T |
7323925 |
gcttggtgttgaacaaaatttttaatgtttgcttcaaatcttgcacaatgcattatgaactaaactaaatatgttatataatactattgtgatgtcattt |
7323826 |
T |
|
| Q |
220 |
ttta |
223 |
Q |
| |
|
|||| |
|
|
| T |
7323825 |
ttta |
7323822 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 60 - 225
Target Start/End: Original strand, 2502586 - 2502751
Alignment:
| Q |
60 |
taaaaggtttgtcatttgattttctaagatttgcgttatgagttaggtgtaataatgcctgcttagtgttgcacaaattttttaatgtttgtttcaaata |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||| |||||||||| | |||||||||||| ||||||| |
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|
| T |
2502586 |
taaaaggtttgtcatttgattttctaagatttgcgttatgatttagatgtaataatttctgcttggtgttgcacagaaattttaatgtttgcttcaaatc |
2502685 |
T |
|
| Q |
160 |
ttgcacaatggattatgaactaaactgaatatgtcatataatactattgtgatgtcagtttttaag |
225 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| ||| |||| |
|
|
| T |
2502686 |
ttgcacaatgcattatgaactaaactgaatatgttatataatattattgtgatgtcattttctaag |
2502751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 47 - 235
Target Start/End: Complemental strand, 2658772 - 2658582
Alignment:
| Q |
47 |
tcatcaattgcattaaaaggtttgtcatttgatttt-ctaagatttgcgttatgagttaggtgtaataatgcctgcttagtgttgcacaaattttttaat |
145 |
Q |
| |
|
|||| |||| ||||||| ||||||||||| |||||| |||||||||||||||||| |||| |||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
2658772 |
tcatgaattacattaaatggtttgtcattggatttttctaagatttgcgttatgaattagatgtaataatgtctgcttagtgttgcacaaatgttttaat |
2658673 |
T |
|
| Q |
146 |
gtttgtttcaaatattgcacaatggattatgaactaaactgaatatgtcatataatactattgtgatgtca-gtttttaaggaagataatt |
235 |
Q |
| |
|
||||| ||||||| ||||||| || ||||||||| ||||||||||||| |||||| ||||||||||||| | ||||||| |||||||||| |
|
|
| T |
2658672 |
gtttgcttcaaatcttgcacactgcattatgaaccaaactgaatatgttatataacactattgtgatgtaatttttttaaagaagataatt |
2658582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 767866 - 767670
Alignment:
| Q |
19 |
cttgcactatattttaaataattcgcaatcatcaattgcattaaaaggtttgtcatttgattttctaagatttgcgttatgagttaggtgtaataatgcc |
118 |
Q |
| |
|
||||||||||||||||||| ||| ||||||| |||||||||||| || |||||||||||||||||||||| || |||||| ||| ||| | |||| | |
|
|
| T |
767866 |
cttgcactatattttaaattgttcacaatcatgaattgcattaaatggattgtcatttgattttctaagatatgtgttatggtgtagatgttacaatgtc |
767767 |
T |
|
| Q |
119 |
tgcttagtgttgcacaaattttttaatgtttgtttcaaatattgcacaatggattatgaactaaactgaatatgtcatataatactattgtgatgtc |
215 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||||| ||| ||||| ||| |||||| |||||| | | |||||||||| |||||| |
|
|
| T |
767766 |
tgcttagtgttgcacaaatttcttaatgtttgtttcaaatcttgcagaatacattataaacaaaactggatatgttacagaatactattgcgatgtc |
767670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 2643959 - 2643793
Alignment:
| Q |
19 |
cttgcactatattttaaataattcgcaatcatcaattgcattaaaaggtttgtcatttgattttctaagatttgcgttatgagttaggtgtaataatgcc |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||| |||| ||||||||||||||||||||||||| ||| || || ||| ||| | |||| | |
|
|
| T |
2643959 |
cttgcactatattttaaatagttcgcaatcattaattgcatcaaaatgtttgtcatttgattttctaagattcgcgataagatgtagatgttacaatgtc |
2643860 |
T |
|
| Q |
119 |
tgcttagtgttgcacaaattttttaatgtttgtttcaaatattgcacaatggattatgaactaaact |
185 |
Q |
| |
|
||||||||||||| |||||| |||||||||| ||||||| |||||||||| |||||||||| |||| |
|
|
| T |
2643859 |
cgcttagtgttgcataaatttcttaatgtttgcttcaaatcttgcacaatgcattatgaactgaact |
2643793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 128 - 225
Target Start/End: Complemental strand, 7318437 - 7318340
Alignment:
| Q |
128 |
ttgcacaaattttttaatgtttgtttcaaatattgcacaatggattatgaactaaactgaatatgtcatataatactattgtgatgtcagtttttaag |
225 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||| |||| |
|
|
| T |
7318437 |
ttgcacaaattttttaatgtttgcttcaaatcttgcacaatgcattatgaactaaactgaatatgttatataatactattgtgatgtcattttctaag |
7318340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 145
Target Start/End: Original strand, 2477107 - 2477208
Alignment:
| Q |
44 |
caatcatcaattgcattaaaaggtttgtcatttgattttctaagatttgcgttatgagttaggtgtaataatgcctgcttagtgttgcacaaatttttta |
143 |
Q |
| |
|
||||||| |||||| ||||| |||||||||||||||||||||||||||||||||| ||| ||| |||||| |||||||||||||||||||||| ||| |
|
|
| T |
2477107 |
caatcatgaattgctttaaattgtttgtcatttgattttctaagatttgcgttatggtgtagatgttataatgtctgcttagtgttgcacaaatttctta |
2477206 |
T |
|
| Q |
144 |
at |
145 |
Q |
| |
|
|| |
|
|
| T |
2477207 |
at |
2477208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 9594202 - 9594029
Alignment:
| Q |
19 |
cttgcactatattttaaataattcgcaatcatcaattgcattaaaaggtttgtcatttgattttctaagatttgcgttatgagttaggtgtaataatgcc |
118 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| |||||||||||| ||||||||||| |||||||||||| | |||||| ||| ||| | |||| | |
|
|
| T |
9594202 |
cttgcactatattttaaatagttcacaatcatgaattgcattaaatagtttgtcatttcattttctaagatatctgttatggtgtagatgttacaatgtc |
9594103 |
T |
|
| Q |
119 |
tgcttag-tgttgcacaaattttttaatgtttgtttcaaatattgcacaatggattatgaactaaactgaatat |
191 |
Q |
| |
|
| ||||| ||||||| ||||| |||||||||||||||||| ||||| ||| ||||| ||| |||||| |||| |
|
|
| T |
9594102 |
ttcttagacgttgcacgaatttcttaatgtttgtttcaaatcttgcagaatacattataaacaaaactggatat |
9594029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 139
Target Start/End: Complemental strand, 746220 - 746125
Alignment:
| Q |
44 |
caatcatcaattgcattaaaaggtttgtcatttgattttctaagatttgcgttatgagttaggtgtaataatgcctgcttagtgttgcacaaattt |
139 |
Q |
| |
|
||||||| ||||||||| || ||||||||||||||||||||||||||||||||||| ||| ||| ||| || ||||||||| ||||||||||| |
|
|
| T |
746220 |
caatcatgaattgcattgaatggtttgtcatttgattttctaagatttgcgttatggtgtagatgttatattgtatgcttagtgctgcacaaattt |
746125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 216
Target Start/End: Complemental strand, 9561548 - 9561372
Alignment:
| Q |
52 |
aattgcattaaaaggtttgtcatttgattttctaagatttgcgttatgagttaggtg--------taataatgcctgcttagtgttgcacaaatttttta |
143 |
Q |
| |
|
|||||||| ||| |||||||| ||||||||||||||||||| ||||||| |||| || | |||| | ||||||||||||||||| ||| ||| |
|
|
| T |
9561548 |
aattgcatgaaatggtttgtcttttgattttctaagatttgggttatgatttagatgttataaacttataaggtatgcttagtgttgcacaagtttctta |
9561449 |
T |
|
| Q |
144 |
atgtttgttt----caaatattgcacaatggattatgaactaaactgaatatgtcatataatactattgtgatgtca |
216 |
Q |
| |
|
|||||||||| ||||| | | || ||| | |||||||| || | ||||||| |||||||||||||||||||||| |
|
|
| T |
9561448 |
atgtttgtttgctccaaatctcgtacgatgcactatgaactcaatttaatatgttatataatactattgtgatgtca |
9561372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 7333845 - 7333796
Alignment:
| Q |
144 |
atgtttgtttcaaatattgcacaatggattatgaactaaactgaatatgt |
193 |
Q |
| |
|
||||||||||||||| || ||||||| ||||||||||||||||||||||| |
|
|
| T |
7333845 |
atgtttgtttcaaatcttacacaatgcattatgaactaaactgaatatgt |
7333796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 7318501 - 7318434
Alignment:
| Q |
26 |
tatattttaaataattcgcaatcatcaattgcattaaaaggtttgtcatttgattttctaagatttgc |
93 |
Q |
| |
|
||||||||||||| ||| |||||| |||| |||| | ||||||||||| ||||||||||||||||| |
|
|
| T |
7318501 |
tatattttaaatagttcacaatcaaatattgaattatatggtttgtcattcgattttctaagatttgc |
7318434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 7442515 - 7442466
Alignment:
| Q |
174 |
atgaactaaactgaatatgtcatataatactattgtgatgtcagtttttaa |
224 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| |||| ||||||| |
|
|
| T |
7442515 |
atgaactaaactgaatatgttatataatacta-tgtgaggtcactttttaa |
7442466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 34360 - 34476
Alignment:
| Q |
19 |
cttgcactatattttaaataattcgcaatcatcaattgcattaaaaggtttgtcatttgattttctaagatttgcgttatgagttaggtgtaataatgcc |
118 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||||||||| | |
|
|
| T |
34360 |
cttgcactatattttaaatagttcacaatcatgaattgcattaaatggtttgtcattggattttctaagatttgcgttatgaattagatgtaataatgtc |
34459 |
T |
|
| Q |
119 |
tgcttagtgttgcacaa |
135 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
34460 |
tgcttagtgttgcacaa |
34476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 34469 - 34509
Alignment:
| Q |
160 |
ttgcacaatggattatgaactaaactgaatatgtcatataa |
200 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||| |||||| |
|
|
| T |
34469 |
ttgcacaatgcattatgaaccaaactgaatatgttatataa |
34509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 33027115 - 33027183
Alignment:
| Q |
29 |
attttaaataattcgcaatcatcaattgcattaaaaggtttgtcatttgattttctaagatttgcgtta |
97 |
Q |
| |
|
|||||||||| ||| |||| || ||||||||| | |||||||||||||||||||||| ||||| |||| |
|
|
| T |
33027115 |
attttaaatagttcacaattatatattgcattagatggtttgtcatttgattttctaaaatttgagtta |
33027183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 33038687 - 33038744
Alignment:
| Q |
29 |
attttaaataattcgcaatcatcaattgcattaaaaggtttgtcatttgattttctaa |
86 |
Q |
| |
|
|||||||||| ||| ||||||| |||| |||| | |||||||||||||||||||||| |
|
|
| T |
33038687 |
attttaaatagttcacaatcatatattgtattagatggtttgtcatttgattttctaa |
33038744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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