View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3788-1-Insertion-12 (Length: 577)
Name: NF3788-1-Insertion-12
Description: FN3788-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3788-1-Insertion-12 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 39312378 - 39312147
Alignment:
| Q |
8 |
ggttgttaatgttattgttatctagacttactaatatatttagactgattcggttttgtacgtattttcattcttttgctaatagctctggaaacaatat |
107 |
Q |
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| T |
39312378 |
ggttgttaatgttattgttatctagacttactaatatatttagactaattcggttttgtacgtattttcattcttttgctaatagctctggaaacaatat |
39312279 |
T |
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| Q |
108 |
tgatattgattattttcctaaatgaagtaataatactgcaagagtaattaattctaaattatataaagaaaatagagtttaatatggagtgatgttattt |
207 |
Q |
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| T |
39312278 |
tgatattgattattttcctaaatgaagtaattatactgcaagagtaattaattctaaattatataaagaaaatagagtttaatatcgagtgatgttattt |
39312179 |
T |
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| Q |
208 |
ttggtggaaaacaagcggcaagcccgcatgccc |
240 |
Q |
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| T |
39312178 |
ttggtggaaaacaagcggcaag-ccgcatgccc |
39312147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 342 - 577
Target Start/End: Complemental strand, 39312046 - 39311802
Alignment:
| Q |
342 |
tcaaactacatcaagatagatcaaattttgcaaaacatatctatatgcaacttgattatatttttgttttgtgccgatagaaattgattttgaattatag |
441 |
Q |
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| T |
39312046 |
tcaaactacatcaagatagatcaaattttgcaaaacatatctatatgcaacttgattatatttt-gttttgtgccgatagaaattgattttgaattatag |
39311948 |
T |
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| Q |
442 |
attcaaaagcttcacaatctagctcaagttaaaatcaattataaaaagaaaaagaattctaatttagagcaac----------aaaattaattttgtctc |
531 |
Q |
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| T |
39311947 |
attcaaaagcttcacaatctagctcaagttaaaatcaattataaaaagaaaaagaattataatttagagcaacaaaacatataaaaattaattttgtctc |
39311848 |
T |
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| Q |
532 |
ttctaaaagtagaattaaacatgggataactagagtgaatcgtcat |
577 |
Q |
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| T |
39311847 |
ttctaaaagtagaatcaaacatgggataactagaatgaatcgtcat |
39311802 |
T |
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