View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3788-1-Insertion-15 (Length: 124)
Name: NF3788-1-Insertion-15
Description: FN3788-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3788-1-Insertion-15 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 93; Significance: 1e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 326136 - 326252
Alignment:
| Q |
8 |
ctttcgaacaacaagaatgaaagaagaagcagctccttcggtttttcgattgtgtttagcggtggtttgttgcttttccttcttcgctaactcctccgct |
107 |
Q |
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| T |
326136 |
ctttcgaacaacaacaatgaaagaagaagcagctccttccatttttcgactgcgtttagcggtggtttgttgcttttccttcttcgctaactcctccgct |
326235 |
T |
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| Q |
108 |
cccgccgttgcgtttgt |
124 |
Q |
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| T |
326236 |
ccctccgttgcgtttgt |
326252 |
T |
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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 124
Target Start/End: Complemental strand, 326496 - 326433
Alignment:
| Q |
61 |
gtttagcggtggtttgttgcttttccttcttcgctaactcctccgctcccgccgttgcgtttgt |
124 |
Q |
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| T |
326496 |
gtttagcggtggtttgttgttcttcctttttcactaactcctccgctcacgccgctgcatttgt |
326433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 2e-19; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 498105 - 498203
Alignment:
| Q |
8 |
ctttcgaacaacaagaatgaaagaagaag---cagctccttcggtttttcgattgtgtttagcggtggtttgttgcttttccttcttcgctaactcctc |
103 |
Q |
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| T |
498105 |
ctttcgaacaacaacaacggaagaagaagaaacaacttcttcggtttttcggttgcgtttagcggtggtttgttgttcttccttcttcgctaactcctc |
498203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 498324 - 498400
Alignment:
| Q |
28 |
aagaagaagcagctccttcggtttttcgattgtgtttagcggtggtttgttgcttttccttcttcgctaactcctcc |
104 |
Q |
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| T |
498324 |
aagaagaagcagtttcttcagtttttcggttgctattagcggtggtttgttgttcttccttcttcgctaacacctcc |
498400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 498791 - 498695
Alignment:
| Q |
28 |
aagaagaagcagctccttcggtttttcgattgtgtttagcggtggtttgttgcttttccttcttcgctaactcctccgctcccgccgttgcgtttgt |
124 |
Q |
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| T |
498791 |
aagaagaagcaacttcttcggttttttagttgcttttagcggtgatttgttgttcttccttctttgctaactcctccgcccacgccgccgcgtttgt |
498695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 498967 - 498912
Alignment:
| Q |
47 |
ggtttttcgattgtgtttagcggtggtttgttgcttttccttcttcgctaactcct |
102 |
Q |
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| T |
498967 |
ggttttttggttgcgtttagcggtggtttgttgttattccttcttcgctaactcct |
498912 |
T |
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