View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3788-1-Insertion-3 (Length: 1027)

Name: NF3788-1-Insertion-3
Description: FN3788-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3788-1-Insertion-3
NF3788-1-Insertion-3
[»] chr1 (13 HSPs)
chr1 (7-979)||(50750963-50751938)
chr1 (135-244)||(19413103-19413212)
chr1 (459-622)||(19414712-19414875)
chr1 (277-325)||(6932116-6932164)
chr1 (287-338)||(5268311-5268362)
chr1 (289-344)||(28024546-28024601)
chr1 (279-340)||(5410697-5410758)
chr1 (300-337)||(7335907-7335944)
chr1 (300-339)||(4347033-4347072)
chr1 (300-334)||(40352455-40352489)
chr1 (277-311)||(47725165-47725199)
chr1 (277-311)||(47732157-47732191)
chr1 (277-330)||(47978366-47978419)
[»] chr7 (7 HSPs)
chr7 (277-340)||(45557455-45557518)
chr7 (281-340)||(29829305-29829364)
chr7 (287-334)||(117861-117908)
chr7 (300-338)||(38510377-38510415)
chr7 (287-340)||(40491668-40491721)
chr7 (289-334)||(44856735-44856780)
chr7 (300-353)||(48459752-48459805)
[»] chr4 (5 HSPs)
chr4 (277-334)||(33843807-33843864)
chr4 (287-339)||(21743088-21743139)
chr4 (287-334)||(36150629-36150676)
chr4 (300-333)||(55638782-55638815)
chr4 (277-338)||(55647993-55648054)
[»] chr8 (5 HSPs)
chr8 (286-340)||(16972005-16972059)
chr8 (300-339)||(19649229-19649268)
chr8 (301-340)||(38875211-38875250)
chr8 (373-403)||(11038125-11038155)
chr8 (373-403)||(13929819-13929849)
[»] chr6 (3 HSPs)
chr6 (277-334)||(34911039-34911095)
chr6 (277-346)||(28466916-28466985)
chr6 (277-346)||(34736748-34736817)
[»] chr3 (11 HSPs)
chr3 (283-340)||(3776612-3776669)
chr3 (287-340)||(37334976-37335029)
chr3 (300-339)||(7012675-7012714)
chr3 (277-340)||(31084241-31084304)
chr3 (302-333)||(35132231-35132262)
chr3 (300-339)||(44225600-44225639)
chr3 (300-334)||(10852740-10852774)
chr3 (300-334)||(23918882-23918916)
chr3 (287-333)||(24916581-24916627)
chr3 (300-334)||(42644302-42644336)
chr3 (277-334)||(29252129-29252186)
[»] chr2 (8 HSPs)
chr2 (299-340)||(4119381-4119422)
chr2 (277-334)||(10918652-10918709)
chr2 (288-340)||(15220804-15220856)
chr2 (277-340)||(3853943-3854006)
chr2 (300-339)||(23359955-23359994)
chr2 (303-334)||(44439350-44439381)
chr2 (277-334)||(30503303-30503360)
chr2 (308-345)||(42973014-42973051)
[»] chr5 (7 HSPs)
chr5 (287-339)||(27374236-27374288)
chr5 (300-339)||(22811075-22811114)
chr5 (283-326)||(39514933-39514976)
chr5 (373-403)||(12208955-12208985)
chr5 (277-311)||(34454048-34454082)
chr5 (301-338)||(24036623-24036660)
chr5 (300-337)||(43438619-43438656)


Alignment Details
Target: chr1 (Bit Score: 916; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 916; E-Value: 0
Query Start/End: Original strand, 7 - 979
Target Start/End: Original strand, 50750963 - 50751938
Alignment:
Q  7 acaacatgtaagtaaatcatttttagaaggaaaattaaggatataacattgatttatatcaaaccatagcatggaaagacattaaaggaccatcataggt 106  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  50750963 acaacatgtaagtaaatcatttttagaaggaaacttaaggatataacattgatttatatcaaaccatagcatggaaagacattaaaggaccatcatagat 50751062  T
Q  107 gacttttttcctgtcagtagcaataactccttgaactaagcatacaagagattcccactggtttctcattatagaatcacccaccaacatcattctcttt 206  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50751063 gacttttttcctgtcagttgcaataactccttgaactaagcatacaagagattcccactggtttctcattatagaatcacccaccaacatcattctcttt 50751162  T
Q  207 cctctcattttaccaagatatttcagtgcatcaaacctgaaaatgcagcatgatttaagcgtgtttggttattttgaatgaattgattcggactaaaagt 306  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50751163 cctctcattttaccaagatatttcagtgcatcaaacctgaaaatacagcatgatttaagcgtgtttggttattttgaatgaattgattcggactaaaagt 50751262  T
Q  307 gagttaaatgtaaagtgatttatgtttgaatacagttacataaaagtcgactaaaaatcaattgtagagaacatccaaacatgtcaaaatcaattatgca 406  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50751263 gagttaaatgtaaaatgatttatgtttgaatacagttacataaaagtcgactaaaaatcaattgtagagaacatccaaacatgtcaaaatcaattatgca 50751362  T
Q  407 attataagaaaataaaaaggtagcaatttgagaaattaatgttatcatcatcaccttgggatggaacaacctaatggcttccacttccatttctcataat 506  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50751363 attataagaaaacaaaaaggtagcaatgtgagaaattaatgttatcatcatcaccttgggatggaacaacctaatggcttccacttccatttctcataat 50751462  T
Q  507 ccgaatctggccgtccattcttttgacaagtaactgcagtggtgagataaggacagttggaatcatagagagggtaggtttgatcaaatatccattttcc 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50751463 ccgaatctggccgtccattcttttgacaagtaactgcagtggtgagataaggacagttggaatcatagagagggtaggtttgatcaaatatccattttcc 50751562  T
Q  607 aactgagaaatcacatttcttccatgaatctctttgggtttgcaccatgttgacatcttcagtttcttccaatgcaagccaactcgacacatcctctgga 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50751563 aactgagaaatcacatttcttccatgaatctctttgggtttgcaccatgttgacatcttcagtttcttccaatgcaagccaactcgacacatcctctgga 50751662  T
Q  707 ttgatcagtgatgatgcgcagttgaataagcctaagaaggtggtgaagaagaataaaaatgataataaatgaaggtttggttttgccattttggaagctc 806  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50751663 ttgatcagtgatgatgcgcagttgaataagcctaagaaggtggtgaagaagaataaaaatgataataaatgaaggtttggttttgccattttggaagctc 50751762  T
Q  807 aaggtgagagagagcatagagtcatagttgtgaaggagtttttgtaacttagaaaggaccttgttgatgaaaagtgtttgatcaaggcatgacttacggt 906  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  50751763 aaggtgagagagagcatagagtcatagttgtgaaggagtttttgtaactttgaaaggacattgttgatgaaaagtgtttgatcaaggcatgacttacggt 50751862  T
Q  907 gttgtggaccatgcaaatttg-tac-tttactaattgctattgattgattgatctttgtacc-atcacatttttct 979  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  50751863 gttgtggaccatgcaaatttgttacttttactaattgctattgattgattgatctttgtaccaatcacatttttct 50751938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 135 - 244
Target Start/End: Original strand, 19413103 - 19413212
Alignment:
Q  135 ccttgaactaagcatacaagagattcccactggtttctcattatagaatcacccaccaacatcattctctttcctctcattttaccaagatatttcagtg 234  Q
    ||||| ||||||||||| | |||||||||||| ||||||||||| ||||||||||||||||| |||||||| | ||||||||| |||||| | |||||||    
T  19413103 ccttgtactaagcatactaaagattcccactgatttctcattattgaatcacccaccaacattattctcttccttctcatttttccaagaaacttcagtg 19413202  T
Q  235 catcaaacct 244  Q
    ||||||||||    
T  19413203 catcaaacct 19413212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 459 - 622
Target Start/End: Original strand, 19414712 - 19414875
Alignment:
Q  459 accttgggatggaacaacctaatggcttccacttccatttctcataatccgaatctggccgtccattcttttgacaagtaactgcagtggtgagataagg 558  Q
    ||||||||||||| |||||   ||||||||||||||| ||||||||||| ||||||||||  |||||||| |||||||||||||||||  | ||||||||    
T  19414712 accttgggatggagcaaccacttggcttccacttccacttctcataatcggaatctggcctcccattcttctgacaagtaactgcagtactaagataagg 19414811  T
Q  559 acagttggaatcatagagagggtaggtttgatcaaatatccattttccaactgagaaatcacat 622  Q
     ||||| | |||||| |||||||| | || |||| | | |||||||||||| || || ||||||    
T  19414812 gcagttaggatcataaagagggtaagattcatcataaacccattttccaacagaaaagtcacat 19414875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 277 - 325
Target Start/End: Original strand, 6932116 - 6932164
Alignment:
Q  277 attttgaatgaattgattcggactaaaagtgagttaaatgtaaagtgat 325  Q
    ||||||||||||||||||| ||||||||||||||| |||||||| ||||    
T  6932116 attttgaatgaattgattctgactaaaagtgagttgaatgtaaaatgat 6932164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 338
Target Start/End: Complemental strand, 5268362 - 5268311
Alignment:
Q  287 aattgattcggactaaaagtgagttaaatgtaaagtgatttatgtttgaata 338  Q
    ||||||||| | ||||||||||||| ||||||||||||||| ||||||||||    
T  5268362 aattgattctgcctaaaagtgagttgaatgtaaagtgatttttgtttgaata 5268311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 344
Target Start/End: Complemental strand, 28024601 - 28024546
Alignment:
Q  289 ttgattcggactaaaagtgagttaaatgtaaagtgatttatgtttgaatacagtta 344  Q
    |||||||  |||||||||||||||||||||||||||||| |||||  |||||||||    
T  28024601 ttgattcaaactaaaagtgagttaaatgtaaagtgatttttgtttacatacagtta 28024546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 5410758 - 5410697
Alignment:
Q  279 tttgaatgaattgattcggactaaaagtgagttaaatgtaaagtgatttatgtttgaataca 340  Q
    |||||| |||||||||  || ||||||||||||  ||||||| |||||||||||||||||||    
T  5410758 tttgaaagaattgattttgattaaaagtgagttggatgtaaattgatttatgtttgaataca 5410697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 337
Target Start/End: Original strand, 7335907 - 7335944
Alignment:
Q  300 taaaagtgagttaaatgtaaagtgatttatgtttgaat 337  Q
    |||||||||||| |||||||||||||||||||||||||    
T  7335907 taaaagtgagttgaatgtaaagtgatttatgtttgaat 7335944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 300 - 339
Target Start/End: Complemental strand, 4347072 - 4347033
Alignment:
Q  300 taaaagtgagttaaatgtaaagtgatttatgtttgaatac 339  Q
    |||||||||||| |||||||||||||||||||||| ||||    
T  4347072 taaaagtgagttgaatgtaaagtgatttatgtttggatac 4347033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 300 - 334
Target Start/End: Complemental strand, 40352489 - 40352455
Alignment:
Q  300 taaaagtgagttaaatgtaaagtgatttatgtttg 334  Q
    |||||||||||| ||||||||||||||||||||||    
T  40352489 taaaagtgagtttaatgtaaagtgatttatgtttg 40352455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 277 - 311
Target Start/End: Original strand, 47725165 - 47725199
Alignment:
Q  277 attttgaatgaattgattcggactaaaagtgagtt 311  Q
    ||||||||||||||||||| |||||||||||||||    
T  47725165 attttgaatgaattgattctgactaaaagtgagtt 47725199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 277 - 311
Target Start/End: Original strand, 47732157 - 47732191
Alignment:
Q  277 attttgaatgaattgattcggactaaaagtgagtt 311  Q
    ||||||||||||||||||| |||||||||||||||    
T  47732157 attttgaatgaattgattctgactaaaagtgagtt 47732191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 330
Target Start/End: Original strand, 47978366 - 47978419
Alignment:
Q  277 attttgaatgaattgattcggactaaaagtgagttaaatgtaaagtgatttatg 330  Q
    ||||||| ||||||||||  |  |||||||||||| ||||||||||||||||||    
T  47978366 attttgagtgaattgattttgggtaaaagtgagttgaatgtaaagtgatttatg 47978419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 277 - 340
Target Start/End: Complemental strand, 45557518 - 45557455
Alignment:
Q  277 attttgaatgaattgattcggactaaaagtgagttaaatgtaaagtgatttatgtttgaataca 340  Q
    ||||||||||||||||||| ||||||||||||||| || |||||||||||| |||||| |||||    
T  45557518 attttgaatgaattgattctgactaaaagtgagttgaaggtaaagtgatttgtgtttggataca 45557455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 281 - 340
Target Start/End: Original strand, 29829305 - 29829364
Alignment:
Q  281 tgaatgaattgattcggactaaaagtgagttaaatgtaaagtgatttatgtttgaataca 340  Q
    ||||||||||||||| | |||||| |||||| |||||||||||||||||||||| |||||    
T  29829305 tgaatgaattgattctggctaaaaatgagttgaatgtaaagtgatttatgtttggataca 29829364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 287 - 334
Target Start/End: Complemental strand, 117908 - 117861
Alignment:
Q  287 aattgattcggactaaaagtgagttaaatgtaaagtgatttatgtttg 334  Q
    |||| |||| ||||||||||||||||||||||||||| ||| ||||||    
T  117908 aatttattccgactaaaagtgagttaaatgtaaagtggtttttgtttg 117861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 300 - 338
Target Start/End: Original strand, 38510377 - 38510415
Alignment:
Q  300 taaaagtgagttaaatgtaaagtgatttatgtttgaata 338  Q
    |||||||||||| ||| ||||||||||||||||||||||    
T  38510377 taaaagtgagttgaatataaagtgatttatgtttgaata 38510415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 40491721 - 40491668
Alignment:
Q  287 aattgattcggactaaaagtgagttaaatgtaaagtgatttatgtttgaataca 340  Q
    ||||||||  ||||||||||||||| || |||||||||||||| |||| |||||    
T  40491721 aattgattttgactaaaagtgagttgaaggtaaagtgatttatttttggataca 40491668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 289 - 334
Target Start/End: Original strand, 44856735 - 44856780
Alignment:
Q  289 ttgattcggactaaaagtgagttaaatgtaaagtgatttatgtttg 334  Q
    ||||||| | ||||||||||||| ||||||||| ||||||||||||    
T  44856735 ttgattctgcctaaaagtgagttgaatgtaaagcgatttatgtttg 44856780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 300 - 353
Target Start/End: Complemental strand, 48459805 - 48459752
Alignment:
Q  300 taaaagtgagttaaatgtaaagtgatttatgtttgaatacagttacataaaagt 353  Q
    |||||||||||| ||||| || ||||||||||||| ||||| |||| |||||||    
T  48459805 taaaagtgagttgaatgtgaattgatttatgtttggatacacttacttaaaagt 48459752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 277 - 334
Target Start/End: Complemental strand, 33843864 - 33843807
Alignment:
Q  277 attttgaatgaattgattcggactaaaagtgagttaaatgtaaagtgatttatgtttg 334  Q
    ||||||| ||||||||||| | |||||||||||||  |||||||||||||||||||||    
T  33843864 attttgattgaattgattctggctaaaagtgagttggatgtaaagtgatttatgtttg 33843807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 21743088 - 21743139
Alignment:
Q  287 aattgattcggactaaaagtgagttaaatgtaaagtgatttatgtttgaatac 339  Q
    ||||||||||| |||||||||| |||| ||||||||||||||| |||||||||    
T  21743088 aattgattcgggctaaaagtgaattaa-tgtaaagtgatttatatttgaatac 21743139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 287 - 334
Target Start/End: Complemental strand, 36150676 - 36150629
Alignment:
Q  287 aattgattcggactaaaagtgagttaaatgtaaagtgatttatgtttg 334  Q
    ||||||||  || |||||||||||| ||||||||||||||||||||||    
T  36150676 aattgattttgattaaaagtgagttgaatgtaaagtgatttatgtttg 36150629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 300 - 333
Target Start/End: Original strand, 55638782 - 55638815
Alignment:
Q  300 taaaagtgagttaaatgtaaagtgatttatgttt 333  Q
    ||||||||||||||||||||| ||||||||||||    
T  55638782 taaaagtgagttaaatgtaaattgatttatgttt 55638815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 338
Target Start/End: Original strand, 55647993 - 55648054
Alignment:
Q  277 attttgaatgaattgattcggactaaaagtgagttaaatgtaaagtgatttatgtttgaata 338  Q
    ||||||||| ||||||||  |||||||||||| || |||||||||||| ||||  |||||||    
T  55647993 attttgaattaattgattatgactaaaagtgacttgaatgtaaagtgagttataattgaata 55648054  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 286 - 340
Target Start/End: Original strand, 16972005 - 16972059
Alignment:
Q  286 gaattgattcggactaaaagtgagttaaatgtaaagtgatttatgtttgaataca 340  Q
    |||||||||| ||||||||||||||| || ||||| |||||| ||||||||||||    
T  16972005 gaattgattcagactaaaagtgagttgaaggtaaaatgatttgtgtttgaataca 16972059  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 300 - 339
Target Start/End: Complemental strand, 19649268 - 19649229
Alignment:
Q  300 taaaagtgagttaaatgtaaagtgatttatgtttgaatac 339  Q
    |||||||||||| |||||||||||||||||||||| ||||    
T  19649268 taaaagtgagttgaatgtaaagtgatttatgtttggatac 19649229  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 301 - 340
Target Start/End: Original strand, 38875211 - 38875250
Alignment:
Q  301 aaaagtgagttaaatgtaaagtgatttatgtttgaataca 340  Q
    ||||||||||| |||||||||||||||||||||| |||||    
T  38875211 aaaagtgagttcaatgtaaagtgatttatgtttggataca 38875250  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 373 - 403
Target Start/End: Complemental strand, 11038155 - 11038125
Alignment:
Q  373 gagaacatccaaacatgtcaaaatcaattat 403  Q
    |||||||||||||||||||||||||||||||    
T  11038155 gagaacatccaaacatgtcaaaatcaattat 11038125  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 373 - 403
Target Start/End: Original strand, 13929819 - 13929849
Alignment:
Q  373 gagaacatccaaacatgtcaaaatcaattat 403  Q
    |||||||||||||||||||||||||||||||    
T  13929819 gagaacatccaaacatgtcaaaatcaattat 13929849  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 334
Target Start/End: Complemental strand, 34911095 - 34911039
Alignment:
Q  277 attttgaatgaattgattcggactaaaagtgagttaaatgtaaagtgatttatgtttg 334  Q
    ||||||| ||||||||||| ||||||||||||||| || || ||||||||||||||||    
T  34911095 attttgagtgaattgattccgactaaaagtgagttgaaggt-aagtgatttatgtttg 34911039  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 346
Target Start/End: Original strand, 28466916 - 28466985
Alignment:
Q  277 attttgaatgaattgattcggactaaaagtgagttaaatgtaaagtgatttatgtttgaatacagttaca 346  Q
    ||||||| ||||||||||| | |||||| |||||| || ||| |||| |||||||||| ||||| |||||    
T  28466916 attttgagtgaattgattctggctaaaattgagttgaaggtatagtggtttatgtttggatacatttaca 28466985  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 346
Target Start/End: Complemental strand, 34736817 - 34736748
Alignment:
Q  277 attttgaatgaattgattcggactaaaagtgagttaaatgtaaagtgatttatgtttgaatacagttaca 346  Q
    ||||||| ||||||||||| | |||||| |||||| || ||| |||| |||||||||| ||||| |||||    
T  34736817 attttgagtgaattgattctggctaaaattgagttgaaggtatagtggtttatgtttggatacatttaca 34736748  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 340
Target Start/End: Complemental strand, 3776669 - 3776612
Alignment:
Q  283 aatgaattgattcggactaaaagtgagttaaatgtaaagtgatttatgtttgaataca 340  Q
    ||||||||||||| | |||||| |||||| |||||||||||||||||| ||| |||||    
T  3776669 aatgaattgattctggctaaaattgagttgaatgtaaagtgatttatgcttggataca 3776612  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 340
Target Start/End: Original strand, 37334976 - 37335029
Alignment:
Q  287 aattgattcggactaaaagtgagttaaatgtaaagtgatttatgtttgaataca 340  Q
    ||||||||| |||||||| |||||| || |||||||||||||||| ||||||||    
T  37334976 aattgattccgactaaaattgagttgaaggtaaagtgatttatgtctgaataca 37335029  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 300 - 339
Target Start/End: Complemental strand, 7012714 - 7012675
Alignment:
Q  300 taaaagtgagttaaatgtaaagtgatttatgtttgaatac 339  Q
    |||||||||||| |||||||||||||||||||||| ||||    
T  7012714 taaaagtgagttgaatgtaaagtgatttatgtttggatac 7012675  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 277 - 340
Target Start/End: Complemental strand, 31084304 - 31084241
Alignment:
Q  277 attttgaatgaattgattcggactaaaagtgagttaaatgtaaagtgatttatgtttgaataca 340  Q
    |||||||| |||||||||  || |||||||||||| ||||| || ||||||||||||| |||||    
T  31084304 attttgaaagaattgattttgattaaaagtgagttgaatgtgaattgatttatgtttggataca 31084241  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 302 - 333
Target Start/End: Original strand, 35132231 - 35132262
Alignment:
Q  302 aaagtgagttaaatgtaaagtgatttatgttt 333  Q
    ||||||||||||||||||||||||||||||||    
T  35132231 aaagtgagttaaatgtaaagtgatttatgttt 35132262  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 300 - 339
Target Start/End: Complemental strand, 44225639 - 44225600
Alignment:
Q  300 taaaagtgagttaaatgtaaagtgatttatgtttgaatac 339  Q
    |||||||||||| |||||||||||||||||||||| ||||    
T  44225639 taaaagtgagtttaatgtaaagtgatttatgtttggatac 44225600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 300 - 334
Target Start/End: Original strand, 10852740 - 10852774
Alignment:
Q  300 taaaagtgagttaaatgtaaagtgatttatgtttg 334  Q
    |||||||||||| ||||||||||||||||||||||    
T  10852740 taaaagtgagttgaatgtaaagtgatttatgtttg 10852774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 300 - 334
Target Start/End: Complemental strand, 23918916 - 23918882
Alignment:
Q  300 taaaagtgagttaaatgtaaagtgatttatgtttg 334  Q
    |||||||||||| ||||||||||||||||||||||    
T  23918916 taaaagtgagttgaatgtaaagtgatttatgtttg 23918882  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 287 - 333
Target Start/End: Complemental strand, 24916627 - 24916581
Alignment:
Q  287 aattgattcggactaaaagtgagttaaatgtaaagtgatttatgttt 333  Q
    ||||||||| | ||||||||||||| |||||||| ||||||||||||    
T  24916627 aattgattcaggctaaaagtgagttgaatgtaaaatgatttatgttt 24916581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 300 - 334
Target Start/End: Complemental strand, 42644336 - 42644302
Alignment:
Q  300 taaaagtgagttaaatgtaaagtgatttatgtttg 334  Q
    |||||||||||| ||||||||||||||||||||||    
T  42644336 taaaagtgagttgaatgtaaagtgatttatgtttg 42644302  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 334
Target Start/End: Original strand, 29252129 - 29252186
Alignment:
Q  277 attttgaatgaattgattcggactaaaagtgagttaaatgtaaagtgatttatgtttg 334  Q
    ||||||| ||||||||||  ||  ||||||||||||| |||||| |||||||||||||    
T  29252129 attttgattgaattgattttgatcaaaagtgagttaattgtaaattgatttatgtttg 29252186  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 4119381 - 4119422
Alignment:
Q  299 ctaaaagtgagttaaatgtaaagtgatttatgtttgaataca 340  Q
    ||||||||||||  ||||||||||||||||||||||||||||    
T  4119381 ctaaaagtgagtctaatgtaaagtgatttatgtttgaataca 4119422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 334
Target Start/End: Complemental strand, 10918709 - 10918652
Alignment:
Q  277 attttgaatgaattgattcggactaaaagtgagttaaatgtaaagtgatttatgtttg 334  Q
    ||||||| ||||||||||  |  |||||||||||| ||||||||||||||||||||||    
T  10918709 attttgactgaattgattttggataaaagtgagttgaatgtaaagtgatttatgtttg 10918652  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 288 - 340
Target Start/End: Original strand, 15220804 - 15220856
Alignment:
Q  288 attgattcggactaaaagtgagttaaatgtaaagtgatttatgtttgaataca 340  Q
    |||||||  ||| ||||||||||| |||||||||||||||||||||| |||||    
T  15220804 attgattatgacgaaaagtgagttgaatgtaaagtgatttatgtttggataca 15220856  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 277 - 340
Target Start/End: Complemental strand, 3854006 - 3853943
Alignment:
Q  277 attttgaatgaattgattcggactaaaagtgagttaaatgtaaagtgatttatgtttgaataca 340  Q
    |||||||  |||||||||  || |||||||||||| |||||||| ||||||||||||| |||||    
T  3854006 attttgatagaattgattttgattaaaagtgagttgaatgtaaattgatttatgtttggataca 3853943  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 300 - 339
Target Start/End: Original strand, 23359955 - 23359994
Alignment:
Q  300 taaaagtgagttaaatgtaaagtgatttatgtttgaatac 339  Q
    |||||||||||| |||||||||||||||||||||| ||||    
T  23359955 taaaagtgagttgaatgtaaagtgatttatgtttggatac 23359994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 303 - 334
Target Start/End: Complemental strand, 44439381 - 44439350
Alignment:
Q  303 aagtgagttaaatgtaaagtgatttatgtttg 334  Q
    ||||||||||||||||||||||||||||||||    
T  44439381 aagtgagttaaatgtaaagtgatttatgtttg 44439350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 334
Target Start/End: Complemental strand, 30503360 - 30503303
Alignment:
Q  277 attttgaatgaattgattcggactaaaagtgagttaaatgtaaagtgatttatgtttg 334  Q
    ||||||| ||||||||||| |||||||||| |||| || ||||| |||||| ||||||    
T  30503360 attttgagtgaattgattctgactaaaagttagttgaaggtaaactgatttttgtttg 30503303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 42973051 - 42973014
Alignment:
Q  308 agttaaatgtaaagtgatttatgtttgaatacagttac 345  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  42973051 agttaaatgtaaagtaatttatgtttgaatacatttac 42973014  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 27374236 - 27374288
Alignment:
Q  287 aattgattcggactaaaagtgagttaaatgtaaagtgatttatgtttgaatac 339  Q
    ||||||||| |||||||||| ||||||| |||||||||||| || ||||||||    
T  27374236 aattgattccgactaaaagtaagttaaaagtaaagtgatttgtgattgaatac 27374288  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 300 - 339
Target Start/End: Complemental strand, 22811114 - 22811075
Alignment:
Q  300 taaaagtgagttaaatgtaaagtgatttatgtttgaatac 339  Q
    |||||||||||| |||||||||||||||||||||| ||||    
T  22811114 taaaagtgagttgaatgtaaagtgatttatgtttggatac 22811075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 283 - 326
Target Start/End: Complemental strand, 39514976 - 39514933
Alignment:
Q  283 aatgaattgattcggactaaaagtgagttaaatgtaaagtgatt 326  Q
    ||||||||||||| | |||||| |||||||||||||||||||||    
T  39514976 aatgaattgattctggctaaaattgagttaaatgtaaagtgatt 39514933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 373 - 403
Target Start/End: Original strand, 12208955 - 12208985
Alignment:
Q  373 gagaacatccaaacatgtcaaaatcaattat 403  Q
    |||||||||||||||||||||||||||||||    
T  12208955 gagaacatccaaacatgtcaaaatcaattat 12208985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 277 - 311
Target Start/End: Original strand, 34454048 - 34454082
Alignment:
Q  277 attttgaatgaattgattcggactaaaagtgagtt 311  Q
    ||||||||||||||||||| |||||||||||||||    
T  34454048 attttgaatgaattgattctgactaaaagtgagtt 34454082  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 301 - 338
Target Start/End: Complemental strand, 24036660 - 24036623
Alignment:
Q  301 aaaagtgagttaaatgtaaagtgatttatgtttgaata 338  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  24036660 aaaagtgagttgaatgtaaaatgatttatgtttgaata 24036623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 300 - 337
Target Start/End: Original strand, 43438619 - 43438656
Alignment:
Q  300 taaaagtgagttaaatgtaaagtgatttatgtttgaat 337  Q
    ||||||||||||||||||||||| || |||||||||||    
T  43438619 taaaagtgagttaaatgtaaagttatctatgtttgaat 43438656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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