View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3788-1-Insertion-5 (Length: 305)
Name: NF3788-1-Insertion-5
Description: FN3788-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3788-1-Insertion-5 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 8 - 305
Target Start/End: Complemental strand, 3542751 - 3542454
Alignment:
| Q |
8 |
tgaacatgactaatgtgattgagaattttcaaatccggagatcattgtgaaattttgttaatttcaaggacatagttaccagcaccctacaatttcatga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3542751 |
tgaacatgactaatgtgattgagaattttcaaatccggagatcattgtgaaattttgttaatttcaaggacatagttaccagcaccctacaatttcatga |
3542652 |
T |
|
| Q |
108 |
actaaattggcgattcactctattcagattccattttcacaaacctgttccttcttgtatggccttctctagagcctccagctcagtcaatctatcctcc |
207 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3542651 |
actaaattggtgattcactctattcagattccattttcacaaacctgttccttcttgtatggccttctctagagcctccagctcagtcaatctatcctcc |
3542552 |
T |
|
| Q |
208 |
gtaagctgcagaaatcatcattgtaaaaaggaccagacactagaataatttattcaatgaaaataaccaccaaaaagagtccgaaacctgtgttttgt |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3542551 |
gtaagctgcagaaatcatcattgtaaaaaggaccagagactagaataatttattcaatgaaaataaccaccaaaaagagtccgaaacctgtgttttgt |
3542454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 21538734 - 21538789
Alignment:
| Q |
23 |
tgattgagaattttcaaatccggagatcattgtgaaattttgttaatttcaaggac |
78 |
Q |
| |
|
||||||||||||||||||| | |||||||| |||||||||||||| ||||||||| |
|
|
| T |
21538734 |
tgattgagaattttcaaattcatagatcattttgaaattttgttaacttcaaggac |
21538789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 20638183 - 20638128
Alignment:
| Q |
23 |
tgattgagaattttcaaatccggagatcattgtgaaattttgttaatttcaaggac |
78 |
Q |
| |
|
||||||||||||||||||| | |||||||| |||||||||||||| ||||||||| |
|
|
| T |
20638183 |
tgattgagaattttcaaattcatagatcattttgaaattttgttaacttcaaggac |
20638128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 14286461 - 14286386
Alignment:
| Q |
23 |
tgattgagaattttcaaatccggagatcattgtgaaattttgttaatttcaaggacatagttaccagcaccctaca |
98 |
Q |
| |
|
||||||||||||| ||||| ||| |||| || | |||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
14286461 |
tgattgagaatttccaaattcggggatcgttttaaaattttgttaatttcaaggactaagttgaaagcaccctaca |
14286386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University