View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3788-2-Insertion-10 (Length: 760)
Name: NF3788-2-Insertion-10
Description: NF3788-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3788-2-Insertion-10 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 97 - 324
Target Start/End: Complemental strand, 26312777 - 26312550
Alignment:
| Q |
97 |
ggatttagaaggttatatatgatggcaggaaggtgataactttggaatggctgccttgaatgatcattgtcatatgggccatgtacgatgtgctttccat |
196 |
Q |
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| T |
26312777 |
ggatttagaaggttatatatgatggcaggaaggtgataactttggaatggctgccttgaatgatcattgtcatatgggccatgtacgatgtgctttccat |
26312678 |
T |
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| Q |
197 |
ggtttcagtgtttgagatttttattattgactagactacaccttcatttttaccactaaaagaagcaaaagattgtgttgggaaactccttttaatggca |
296 |
Q |
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| T |
26312677 |
ggtttcagtgtttgagatttttattattgactagactacaccttcatttttaccactaaaagaagcaaaagattgtgttgggaaactccttttaatggca |
26312578 |
T |
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| Q |
297 |
ttattacactgcacgcaccatatatata |
324 |
Q |
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| T |
26312577 |
ttattacactgcacgcaccatatatata |
26312550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 521 - 758
Target Start/End: Complemental strand, 26312405 - 26312166
Alignment:
| Q |
521 |
tgatatgcatataaataatgagtgatttttgttttcttgcattaatttaatttatagaaaactattacttcagactcatggtgtatttagtaccatatgt |
620 |
Q |
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| T |
26312405 |
tgatatgcatataaataatgagtgattttttttttcttgcattaatttaatttatagaaaactattacttcggactcatggtgtatttagtaccatatgt |
26312306 |
T |
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| Q |
621 |
gcacaattttttgaactattacctcatggtgtatttagaactattaccaatttatttagaactatcacttctgactcatgg-gtatttagtaccatttac |
719 |
Q |
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| T |
26312305 |
acacaatttttagaactattgcctcatggtgtatttagaactattacc-atttatttagaactatcacttctgactcatggtgtatttagtaccatttaa |
26312207 |
T |
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| Q |
720 |
acttctgactcatg--gtgtatttactatttagaacttatt |
758 |
Q |
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| T |
26312206 |
acttctgactcatggtgtgtatttactatttagaacttatt |
26312166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 394 - 446
Target Start/End: Complemental strand, 26312491 - 26312439
Alignment:
| Q |
394 |
aaacatgtttggcaagaaattcttgctcatcgatattatagtgagttagcctt |
446 |
Q |
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| T |
26312491 |
aaacatgtttggcaagaaattcttgctcatcgatattatagtgagttagcctt |
26312439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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