View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3788-2-Insertion-11 (Length: 639)

Name: NF3788-2-Insertion-11
Description: NF3788-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3788-2-Insertion-11
NF3788-2-Insertion-11
[»] chr1 (7 HSPs)
chr1 (156-388)||(19073843-19074077)
chr1 (156-388)||(19121733-19121967)
chr1 (414-482)||(19073684-19073752)
chr1 (414-482)||(19121574-19121642)
chr1 (416-482)||(51796080-51796146)
chr1 (579-612)||(19073508-19073541)
chr1 (579-612)||(19121398-19121431)
[»] scaffold0006 (5 HSPs)
scaffold0006 (114-388)||(127851-128113)
scaffold0006 (529-575)||(214633-214679)
scaffold0006 (579-613)||(214728-214762)
scaffold0006 (529-575)||(128244-128290)
scaffold0006 (579-613)||(128339-128373)
[»] chr7 (2 HSPs)
chr7 (114-335)||(21517075-21517284)
chr7 (82-110)||(21516930-21516958)
[»] chr6 (4 HSPs)
chr6 (156-321)||(21795842-21796009)
chr6 (321-388)||(21800468-21800535)
chr6 (414-482)||(21800626-21800694)
chr6 (579-612)||(21800837-21800870)
[»] chr2 (1 HSPs)
chr2 (562-639)||(4532791-4532868)


Alignment Details
Target: chr1 (Bit Score: 172; Significance: 4e-92; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 156 - 388
Target Start/End: Complemental strand, 19074077 - 19073843
Alignment:
Q  156 gtgcctttattctccactgtctgtatatcata--ccctccattccctcttcacaactagacaaaattgtccactgcatctctaactagtaattaaactaa 253  Q
    ||||||||||||  |||  ||| |||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19074077 gtgcctttattcctcaccatctatatatcatatgcccttcattccctcttcacaactagacaaaattgtccactgcatctctaactagtaattaagctaa 19073978  T
Q  254 gatttcaaaacacatgagttaaagtcgaactaagtcgatattcgtcggccttaaactgcaattgttattgtcataataaaactacatgcgaatcaattag 353  Q
    |||||||||||||| ||||| |||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  19073977 gatttcaaaacacaagagttgaagtcgaattaagtcgatattcttcggccttaagctgcaattgttattgtcataataaaactacatgtgaatcaattag 19073878  T
Q  354 aattaagaagcttatcaatcagatgataacacaat 388  Q
    |||||||||||||||||||||||||||||||||||    
T  19073877 aattaagaagcttatcaatcagatgataacacaat 19073843  T

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Target: chr1; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 156 - 388
Target Start/End: Complemental strand, 19121967 - 19121733
Alignment:
Q  156 gtgcctttattctccactgtctgtatatcata--ccctccattccctcttcacaactagacaaaattgtccactgcatctctaactagtaattaaactaa 253  Q
    ||||||||||||  |||  ||| |||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19121967 gtgcctttattcctcaccatctatatatcatatgcccttcattccctcttcacaactagacaaaattgtccactgcatctctaactagtaattaagctaa 19121868  T
Q  254 gatttcaaaacacatgagttaaagtcgaactaagtcgatattcgtcggccttaaactgcaattgttattgtcataataaaactacatgcgaatcaattag 353  Q
    |||||||||||||| ||||| |||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  19121867 gatttcaaaacacaagagttgaagtcgaattaagtcgatattcttcggccttaagctgcaattgttattgtcataataaaactacatgtgaatcaattag 19121768  T
Q  354 aattaagaagcttatcaatcagatgataacacaat 388  Q
    |||||||||||||||||||||||||||||||||||    
T  19121767 aattaagaagcttatcaatcagatgataacacaat 19121733  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 414 - 482
Target Start/End: Complemental strand, 19073752 - 19073684
Alignment:
Q  414 aataattggagcttcgtgagaattaaggggatgagatagggttgggctagagtaatttgcctgtacagt 482  Q
    ||||||| |||||||||||||||||||||| | ||||||||||||| ||||||||||| ||||||||||    
T  19073752 aataatttgagcttcgtgagaattaagggggtaagatagggttgggttagagtaattttcctgtacagt 19073684  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 414 - 482
Target Start/End: Complemental strand, 19121642 - 19121574
Alignment:
Q  414 aataattggagcttcgtgagaattaaggggatgagatagggttgggctagagtaatttgcctgtacagt 482  Q
    ||||||| |||||||||||||||||||||| | ||||||||||||| ||||||||||| ||||||||||    
T  19121642 aataatttgagcttcgtgagaattaagggggtaagatagggttgggttagagtaattttcctgtacagt 19121574  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 416 - 482
Target Start/End: Original strand, 51796080 - 51796146
Alignment:
Q  416 taattggagcttcgtgagaattaaggggatgagatagggttgggctagagtaatttgcctgtacagt 482  Q
    |||||||||||||||||||||||| |||||||||||||| |||  | ||||||||| ||||||||||    
T  51796080 taattggagcttcgtgagaattaaagggatgagatagggatggattggagtaattttcctgtacagt 51796146  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 612
Target Start/End: Complemental strand, 19073541 - 19073508
Alignment:
Q  579 gaacagtgatgagcaacaaaggccacaagggatg 612  Q
    |||||||||||||||||||||| |||||||||||    
T  19073541 gaacagtgatgagcaacaaagggcacaagggatg 19073508  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 612
Target Start/End: Complemental strand, 19121431 - 19121398
Alignment:
Q  579 gaacagtgatgagcaacaaaggccacaagggatg 612  Q
    |||||||||||||||||||||| |||||||||||    
T  19121431 gaacagtgatgagcaacaaagggcacaagggatg 19121398  T

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Target: scaffold0006 (Bit Score: 158; Significance: 9e-84; HSPs: 5)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 114 - 388
Target Start/End: Original strand, 127851 - 128113
Alignment:
Q  114 aaccagtgtaattgtttcgttaaaaatcgaatgttgatgattgtgcctttattctccactgtctgtatatcataccctccattccctcttcacaactaga 213  Q
    ||||||||||| | ||| |||||||||||| |||||||||||||||||||||||  |||| ||            ||| |||| ||||||||||||||||    
T  127851 aaccagtgtaactattttgttaaaaatcgagtgttgatgattgtgcctttattcctcactatc------------ccttcatttcctcttcacaactaga 127938  T
Q  214 caaaattgtccactgcatctctaactagtaattaaactaagatttcaaaacacatgagttaaagtcgaactaagtcgatattcgtcggccttaaactgca 313  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||| |||||||| ||||| ||||||| |||||||||| |||||    
T  127939 caaaattgtccactgcatctctaactagtaattaagctatgatttcaaaacacaagagttgaagtcgaattaagttgatattcttcggccttaagctgca 128038  T
Q  314 attgttattgtcataataaaactacatgcgaatcaattagaattaagaagcttatcaatcagatgataacacaat 388  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  128039 attgttattgtcataataaaactacaagtgaatcaattagaattaagaagcttatcaatcagatgataacacaat 128113  T

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Target: scaffold0006; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 529 - 575
Target Start/End: Original strand, 214633 - 214679
Alignment:
Q  529 cgacgtagaaagcaaatatgacgcaaactagaagaacagccacatga 575  Q
    |||||||||||||||||| |||||||||||||||||||  |||||||    
T  214633 cgacgtagaaagcaaatacgacgcaaactagaagaacattcacatga 214679  T

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Target: scaffold0006; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 579 - 613
Target Start/End: Original strand, 214728 - 214762
Alignment:
Q  579 gaacagtgatgagcaacaaaggccacaagggatga 613  Q
    |||||||||||||||||||||||||||||||||||    
T  214728 gaacagtgatgagcaacaaaggccacaagggatga 214762  T

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Target: scaffold0006; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 529 - 575
Target Start/End: Original strand, 128244 - 128290
Alignment:
Q  529 cgacgtagaaagcaaatatgacgcaaactagaagaacagccacatga 575  Q
    ||||||||||||||||||  |||||||||| |||||||| |||||||    
T  128244 cgacgtagaaagcaaatacaacgcaaactaaaagaacagtcacatga 128290  T

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Target: scaffold0006; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 579 - 613
Target Start/End: Original strand, 128339 - 128373
Alignment:
Q  579 gaacagtgatgagcaacaaaggccacaagggatga 613  Q
    |||| ||||||||||||||||||||||||||||||    
T  128339 gaacggtgatgagcaacaaaggccacaagggatga 128373  T

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Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 114 - 335
Target Start/End: Original strand, 21517075 - 21517284
Alignment:
Q  114 aaccagtgtaattgtttcgttaaaaatcgaatgttgatgattgtgcctttattctccactgtctgtatatcataccctccattccctcttcacaactaga 213  Q
    |||||| |||||||||| |||||||| ||| |||||||||||||||||||||||               |||| |||| |||||||||||||||||||||    
T  21517075 aaccagagtaattgttttgttaaaaaccgagtgttgatgattgtgcctttattcc--------------tcatgcccttcattccctcttcacaactaga 21517160  T
Q  214 caaaattgtccactgcatctctaactagtaattaaactaagatttcaaaacacatgagttaaagtcgaactaagtc--gatattcgtcggccttaaactg 311  Q
    ||||||||||||||||||||||||||| |||||||  ||||||||||||||||| ||||| |||||||| ||||||   |||||| | |||||||| |||    
T  21517161 caaaattgtccactgcatctctaactactaattaagttaagatttcaaaacacaagagttgaagtcgaattaagtcaatatattctttggccttaagctg 21517260  T
Q  312 caattgttattgtcataataaaac 335  Q
    |||||||||||||||||| |||||    
T  21517261 caattgttattgtcataaaaaaac 21517284  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 21516930 - 21516958
Alignment:
Q  82 ttgttttcaaacatgatattttagcatat 110  Q
    |||||||||||||||||||||||||||||    
T  21516930 ttgttttcaaacatgatattttagcatat 21516958  T

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Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 156 - 321
Target Start/End: Original strand, 21795842 - 21796009
Alignment:
Q  156 gtgcctttattctccactgtctgtatatcata--ccctccattccctcttcacaactagacaaaattgtccactgcatctctaactagtaattaaactaa 253  Q
    ||||||||||||  |||| ||| |||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||     
T  21795842 gtgcctttattcctcactatctatatatcatatgcccttcattccctcttcacaactagacaaaattgtccactgcatctctaactagtaattaagttat 21795941  T
Q  254 gatttcaaaacacatgagttaaagtcgaactaagtcgatattcgtcggccttaaactgcaattgttat 321  Q
    |||||||||||||| ||||| |||| ||| ||||||||||||| ||  | |||| |||||||||||||    
T  21795942 gatttcaaaacacaagagttgaagtggaattaagtcgatattcttcaacgttaagctgcaattgttat 21796009  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 321 - 388
Target Start/End: Original strand, 21800468 - 21800535
Alignment:
Q  321 ttgtcataataaaactacatgcgaatcaattagaattaagaagcttatcaatcagatgataacacaat 388  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  21800468 ttgtcataataaaactacatgtgaatcaactagaattaagaagcttatcaatcagatgataacacaat 21800535  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 414 - 482
Target Start/End: Original strand, 21800626 - 21800694
Alignment:
Q  414 aataattggagcttcgtgagaattaaggggatgagatagggttgggctagagtaatttgcctgtacagt 482  Q
    ||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||    
T  21800626 aataatttgagcttcgtgagaattaagggggtaagatagggttgggctagagtaattttcctgtacagt 21800694  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 612
Target Start/End: Original strand, 21800837 - 21800870
Alignment:
Q  579 gaacagtgatgagcaacaaaggccacaagggatg 612  Q
    |||||||||||||||||||||| |||||||||||    
T  21800837 gaacagtgatgagcaacaaagggcacaagggatg 21800870  T

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Target: chr2 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 562 - 639
Target Start/End: Original strand, 4532791 - 4532868
Alignment:
Q  562 gaacagccacatgacatgaacagtgatgagcaacaaaggccacaagggatgagtgaccaggaatagaaataaattctc 639  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4532791 gaacagccacatgacatgaacagtgatgagcaacaaaggccacaagggatgagtgaccaggaatagaaataaattctc 4532868  T

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