View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3788-2-Insertion-12 (Length: 612)
Name: NF3788-2-Insertion-12
Description: NF3788-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3788-2-Insertion-12 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 342 - 612
Target Start/End: Complemental strand, 39312046 - 39311767
Alignment:
| Q |
342 |
tcaaactacatcaagatagatcaaattttgcaaaacatatctatatgcaacttgattatatttttgttttgtgccgatagaaattgattttgaattatag |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39312046 |
tcaaactacatcaagatagatcaaattttgcaaaacatatctatatgcaacttgattatatttt-gttttgtgccgatagaaattgattttgaattatag |
39311948 |
T |
|
| Q |
442 |
attcaaaagcttcacaatctagctcaagttaaaatcaattataaaaagaaaaagaattctaatttagagcaac----------aaaattaattttgtctc |
531 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
39311947 |
attcaaaagcttcacaatctagctcaagttaaaatcaattataaaaagaaaaagaattataatttagagcaacaaaacatataaaaattaattttgtctc |
39311848 |
T |
|
| Q |
532 |
ttctaaaagtagaattaaacatgggataactagagtgaatcgtcattaacaccacactcattcaaaataaaattaacttgt |
612 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39311847 |
ttctaaaagtagaatcaaacatgggataactagaatgaatcgtcattaacaccacactcattcaaaataaaattaacttgt |
39311767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 39312378 - 39312147
Alignment:
| Q |
8 |
ggttgttaatgttattgttatctagacttactaatatatttagactgattcggttttgtacgtattttcattcttttgctaatagctctggaaacaatat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39312378 |
ggttgttaatgttattgttatctagacttactaatatatttagactaattcggttttgtacgtattttcattcttttgctaatagctctggaaacaatat |
39312279 |
T |
|
| Q |
108 |
tgatattgattattttcctaaatgaagtaataatactgcaagagtaattaattctaaattatataaagaaaatagagtttaatatggagtgatgttattt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
39312278 |
tgatattgattattttcctaaatgaagtaattatactgcaagagtaattaattctaaattatataaagaaaatagagtttaatatcgagtgatgttattt |
39312179 |
T |
|
| Q |
208 |
ttggtggaaaacaagcggcaagcccgcatgccc |
240 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
39312178 |
ttggtggaaaacaagcggcaag-ccgcatgccc |
39312147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University