View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3788-2-Insertion-13 (Length: 567)
Name: NF3788-2-Insertion-13
Description: NF3788-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3788-2-Insertion-13 |
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Alignment Details
Target: chr8 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 9 - 562
Target Start/End: Complemental strand, 38928938 - 38928388
Alignment:
| Q |
9 |
attttatgtcccatatagaagtggcaatgaaagaataatatcaacaatgaggtttgaggtattctttaccaatttggaagactaagctggcaaaaccctt |
108 |
Q |
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| T |
38928938 |
attttatgtcccatatagaagtggcaatgaaagaataatatcaacaatgaggtttgaggtattctttaccaatttggaagactaagctggcaaaaccctt |
38928839 |
T |
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| Q |
109 |
atccctaatgtcctatgtgatgttgatatcttggaggaatcttgaatttccacttctagaaaaataattatctcaagctagttttgaattcccacttaat |
208 |
Q |
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| T |
38928838 |
atccctaatgtcctatgtgatgttgatatcttggaggaatcttgaatttccacttctagaaaaataattatctcaagctagtttttaattcccacttaat |
38928739 |
T |
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| Q |
209 |
ccaacttggttaggggtcccctcacctcagccacattaannnnnnngtaccaaatatatacaaataatgtcgaatttttaatgttgtgctagtcaaagtt |
308 |
Q |
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| T |
38928738 |
ccaacttggttaggggtcccctcacctcagccacattaatttttt-gtaccaaatatatacaaataatgtcgaatttttaatgttgtgctagtcaaagtt |
38928640 |
T |
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| Q |
309 |
gactgaacatttttatttgcatgggaccttaatttcggcacattgaatagtaattaattttcttgatcaagtgatcactaccagctagaagagtaccaag |
408 |
Q |
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| T |
38928639 |
gactgaacatttttatttgcatgggaccttaatttcggcacattgaatagtaattaattttcttgatcaagtgatcactaccagctagaagagtaccaag |
38928540 |
T |
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| Q |
409 |
atccctattttaaggccagaaagtatcattacaccatataaataagtaaatagagaatgaaaataagtttcaaaggcactttgtcaaggaattaaggaat |
508 |
Q |
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| T |
38928539 |
atccctattttaaggccagaaagtatcattacaccatataaataagtaaatagagaatg--aataagtttcaaaggcactttgtcaaggaattaaggaat |
38928442 |
T |
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| Q |
509 |
atacaattcaacagtgtgctttaaaaatgatgctaatcatggttttaaaatcct |
562 |
Q |
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| T |
38928441 |
atacaattcaacagtgtgctttaaaaatgatgctaatcatggttttaaaatcct |
38928388 |
T |
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