View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3788-2-Insertion-14 (Length: 264)
Name: NF3788-2-Insertion-14
Description: NF3788-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3788-2-Insertion-14 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 126 - 264
Target Start/End: Complemental strand, 35689909 - 35689773
Alignment:
| Q |
126 |
tgagccaggaaagcttataacgagatattctgttaagttcgaggttgttctaaacactttggtaatataaggttcatttgttgagttgtgagctttaaaa |
225 |
Q |
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| T |
35689909 |
tgagccaggaaagcttataacgagatatt--gttaagttcgaggttgttctaaacactttggtaatataaggttcatttgttgagttgtgagctttaaaa |
35689812 |
T |
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| Q |
226 |
gacaaactacatgnnnnnnnnataacctcttcgtttaat |
264 |
Q |
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| T |
35689811 |
gacaaactacatgctttttttataacctcttcgtttaat |
35689773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 57 - 125
Target Start/End: Complemental strand, 35690029 - 35689961
Alignment:
| Q |
57 |
catagtgaaatggaccaatggaaacaagactatacaagtatagtaaagtaagaaaatatagaagtacct |
125 |
Q |
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| T |
35690029 |
cataatgaaatggaccaatggaaacaagactatacaaggatagtaaagtaagaaaatatagaagtacct |
35689961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 133 - 264
Target Start/End: Original strand, 35683110 - 35683241
Alignment:
| Q |
133 |
ggaaagcttataacgagatattctgttaagttcgaggttgttctaaacactttggtaatataaggttcatttgttgagttgtgagctttaaaagacaaac |
232 |
Q |
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| T |
35683110 |
ggaaagcttagaacaagatattctgttaagtccgaggatatcctaaacagttcggaaatataaggttcattttctgagttgtgagctttgaaagacaaac |
35683209 |
T |
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| Q |
233 |
tacatgnnnnnnnnataacctcttcgtttaat |
264 |
Q |
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| T |
35683210 |
tacatgttttttttataacctcttcgtttaat |
35683241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 35694173 - 35694248
Alignment:
| Q |
8 |
ttgaggtacctcagtttgagatcttccattgattttaacatcttgtctccatagtgaaatggaccaatggaaacaa |
83 |
Q |
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| T |
35694173 |
ttgaggtacctcaatttgagatcttccattgattctaacctcttgtctccattgtgaaatggaccaatggaaacaa |
35694248 |
T |
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