View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3788-2-Insertion-15 (Length: 240)
Name: NF3788-2-Insertion-15
Description: NF3788-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3788-2-Insertion-15 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 135060 - 135292
Alignment:
| Q |
8 |
gatactcttaactttagcagcttactacctttggtgaaatgataaaacataaatgatgttggtgtaaaattatttgagggttctaagtcattgagaatcg |
107 |
Q |
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| T |
135060 |
gatactcttaactttagcagcttactacgtttggtgaaatgataaaacataaatgatgttggtgtaaaattatttgagggttctaagtcattgggaatcg |
135159 |
T |
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| Q |
108 |
ctaacgcttttccagctaaaattgaaggtgttatatgtgtcatataatttgtttctaggagaggttgaggaaatctttgacttgaatgtgactcctcttt |
207 |
Q |
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| T |
135160 |
ctaacgcttttccagctaaaattgaaggtgttatatgtgtcatataatttgtttctaggagaggttgaggaaatctttgacttgaatgtgactcctcttt |
135259 |
T |
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| Q |
208 |
gactattcaagtttttagtaattcttctttggt |
240 |
Q |
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| T |
135260 |
gactattcaagtttttagtaattcttctttggt |
135292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 131875 - 131958
Alignment:
| Q |
8 |
gatactcttaactttagcagcttactacctttggtgaaatgataaaacataaatgatgttggtgtaaaattatttgagggttct |
91 |
Q |
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| T |
131875 |
gatactcttagctttattaacttactacctttggagaaacgatgaaagataagtgatgttggtgtaaacttgtttaagggttct |
131958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 18850625 - 18850662
Alignment:
| Q |
9 |
atactcttaactttagcagcttactacctttggtgaaa |
46 |
Q |
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| T |
18850625 |
atactcttaactttagcagtttactacctttggagaaa |
18850662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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