View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3788-2-Insertion-19 (Length: 281)
Name: NF3788-2-Insertion-19
Description: NF3788-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3788-2-Insertion-19 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 7 - 281
Target Start/End: Original strand, 11104279 - 11104553
Alignment:
| Q |
7 |
agtatcttctattctggtatgtttttaatttcataaactttatatggtcactagtaatatttgcttctcaaatatccatcttaaaatcatctaatatata |
106 |
Q |
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| T |
11104279 |
agtatcttctattctggtatgtttttaatttcataaactttatatggtcactagtaatttttgcttctcaaatatccatcttaaaatcatctaatatata |
11104378 |
T |
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| Q |
107 |
ttgatctatgaacagggaggaggtccctcatggccaattccattgggaagaagggatagcttaactgccaacataactcttgcaaatcaaaaccttcctg |
206 |
Q |
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| T |
11104379 |
ttgatctatgaacagggaggaggtccctcatggccaattccattgggaagaagggatagcttaaccgccaacataactcttgcaaatcaaaaccttcccg |
11104478 |
T |
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| Q |
207 |
gacccttctccacattggatcaacttaaagcttcatttcttgttcaaggtctcaacactacagatttagttacac |
281 |
Q |
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| T |
11104479 |
gacccttctccacattggatcaacttaaagcttcatttcttgttcaaggtctcaacactacagatttagttacac |
11104553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 102 - 281
Target Start/End: Original strand, 11097351 - 11097530
Alignment:
| Q |
102 |
atatattgatctatgaacagggaggaggtccctcatggccaattccattgggaagaagggatagcttaactgccaacataactcttgcaaatcaaaacct |
201 |
Q |
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| T |
11097351 |
atatattggtttatgaacagggaggaggtccctcatggcaaattccattgggaagaagggatagtttaacagcaaaccaagcccttgcaaatcaaaacct |
11097450 |
T |
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| Q |
202 |
tcctggacccttctccacattggatcaacttaaagcttcatttcttgttcaaggtctcaacactacagatttagttacac |
281 |
Q |
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| T |
11097451 |
tccagcaccctttttcacattggatcaacttaaagctgcatttcttgttcaaggtctcaacactacagatttagttacac |
11097530 |
T |
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