View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3788-2-Insertion-2 (Length: 1021)
Name: NF3788-2-Insertion-2
Description: NF3788-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3788-2-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 590; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 344 - 1017
Target Start/End: Original strand, 45762892 - 45763571
Alignment:
| Q |
344 |
ttgatttgttggtctgagtttattttagattgaattgaatgacatggtttgatttcagcatttctattgcaatttgtgttagttattgaatttgtgtga- |
442 |
Q |
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| T |
45762892 |
ttgatttgttggtctgagtttattttagattgaattgaatgacatgctttgatttcagcatttctattgcaatttgtgttatttattgaatttgtgtgaa |
45762991 |
T |
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| Q |
443 |
ggggaaactttcatttctttgcatgtaaccgtttaattaactaatagcctattatgtttttgaagaaaatatcttgatttgaaatgtttggtggattttt |
542 |
Q |
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| T |
45762992 |
ggggaaactttcatttctttgcatgtaaccgtttaattaactaatagcctattatgtttttgaagaaaatatattgatttgaaatgtttggtggattttt |
45763091 |
T |
|
| Q |
543 |
aagattaatcaagatgggagctcttagatgggttaatgttgtgcaccagcatcaggaatggagacttttcacttgcatttggttacatgctggaattatt |
642 |
Q |
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| T |
45763092 |
aagattaatcaagatgggagctcttagatgggttaatgttgtgcaccagcatcaggaatggagacttttcacttgcatttggttacatgctggaattatt |
45763191 |
T |
|
| Q |
643 |
cacttgctatcaaacatgttatgcctggtcttgatcggcattcgcctcgagcaacaattcgggtttggtaagctgtttccctctgctgcaattgatatct |
742 |
Q |
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| T |
45763192 |
cacttgctatcaaacatgttatgcctggtcttgatcggcattcgcctcgagcaacaattcgggtttggtaagctgtttccctctgctgcaa-tgatatct |
45763290 |
T |
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| Q |
743 |
ccattcattaacatttagtaaatgtcacacacaataaggaaaaacaataaacttttgatttagttaattccaataattgtagtccttatctaatgatacc |
842 |
Q |
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| T |
45763291 |
ccattcattaacatttagtaaatgtcacacacaataaggaaaaacaataaacttttgatttagttaattccaataattgtagtccttatctaatgatacc |
45763390 |
T |
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| Q |
843 |
ttctagaagaacttgatttagttgttctagtaaatggccatggcctaacattttaatgtcaaattaatggcatgcagtgaagattggattgatataccta |
942 |
Q |
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| T |
45763391 |
ttctag-agaacttgatttagttgttctagtaaatggccatggcctaacattttaatgtcaaattaatggcatgcagtgaagattggattgatataccta |
45763489 |
T |
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| Q |
943 |
-tgtct-gatttggagggagtgttattttcttca--ttttatcagaaatagcatttctgt--gggct--cagtgctctttttg |
1017 |
Q |
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| T |
45763490 |
ttgtctggatttggagggagtg-tattttcttcaatttttatcagaaatagcatttctgttggggcttccagtgctctttttg |
45763571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 8 - 331
Target Start/End: Original strand, 45762527 - 45762850
Alignment:
| Q |
8 |
tgaagttgattttggcattgctattattgatgatcaaacnnnnnnnnnnnnnnnnngaaagacatgatcaaacttgtttgattattcctttcatgcttag |
107 |
Q |
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| T |
45762527 |
tgaagttgattttggcattgctattattgatgatcaaacttgttttttttttttttgaaagagatgatcaaacttgtttgatcatccctttcatgcttag |
45762626 |
T |
|
| Q |
108 |
tgtaaattatcctgaacctttataattgtgttatgaggagtaatcaaactacactgatgcaatattacacaaatgttacattgttcaatattgttttagc |
207 |
Q |
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| T |
45762627 |
tgtatattatcctgaacctttataattgtgttatgaggagtaatcaaactacactgatgcaatattacacaaatgttacatcgttcaatattgttttagc |
45762726 |
T |
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| Q |
208 |
caattcatattttccaaatttgtccttgtactataagtatatatcatcgatataaatttttacataaatctaaaatcatctcatagtttattgagacctc |
307 |
Q |
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| T |
45762727 |
caattcatattttccaaatttgtccttggactataagtatatatcatcgatataaatttttacataaatctaaaatcatctcatagtttattgagacctc |
45762826 |
T |
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| Q |
308 |
ccaagatttagggtttatgcgctt |
331 |
Q |
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| T |
45762827 |
ccaagatttagggtttatgcgctt |
45762850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 600 - 712
Target Start/End: Original strand, 39281238 - 39281350
Alignment:
| Q |
600 |
atggagacttttcacttgcatttggttacatgctggaattattcacttgctatcaaacatgttatgcctggtcttgatcggcattcgcctcgagcaacaa |
699 |
Q |
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| T |
39281238 |
atggagacttgtctcatgcatttggttacatgctggaatcattcatttggcagcaaacatgatcagtctggtcttcattggaattcgcctcgaacaacaa |
39281337 |
T |
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| Q |
700 |
ttcgggtttggta |
712 |
Q |
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| T |
39281338 |
tttgggttcggta |
39281350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 333
Target Start/End: Complemental strand, 29890059 - 29889984
Alignment:
| Q |
257 |
atataaatttttacataaatctaaaatcatctcatagtttattgagacctcccaagatttagggtttatgcgctttt |
333 |
Q |
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| T |
29890059 |
atataaatttttacgtaaatctaaaaccattt-atatgttattgagacctaccaagattaaaggtttatgcactttt |
29889984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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