View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3788-2-Insertion-20 (Length: 307)

Name: NF3788-2-Insertion-20
Description: NF3788-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3788-2-Insertion-20
NF3788-2-Insertion-20
[»] chr2 (12 HSPs)
chr2 (27-140)||(6512111-6512224)
chr2 (230-307)||(6512437-6512514)
chr2 (27-98)||(30706183-30706250)
chr2 (27-98)||(36400866-36400937)
chr2 (27-111)||(3870020-3870106)
chr2 (27-95)||(11028791-11028857)
chr2 (59-96)||(28734129-28734166)
chr2 (53-112)||(9008974-9009033)
chr2 (51-97)||(3647428-3647474)
chr2 (64-113)||(37721443-37721492)
chr2 (51-111)||(29685522-29685582)
chr2 (48-95)||(38879529-38879574)
[»] chr3 (9 HSPs)
chr3 (27-110)||(47169243-47169326)
chr3 (27-94)||(2008412-2008479)
chr3 (57-99)||(1994907-1994949)
chr3 (59-108)||(44880253-44880302)
chr3 (27-114)||(22220203-22220288)
chr3 (53-99)||(2008522-2008568)
chr3 (47-92)||(45805582-45805625)
chr3 (28-112)||(14784921-14785005)
chr3 (53-97)||(22831227-22831271)
[»] chr7 (9 HSPs)
chr7 (27-96)||(46023139-46023208)
chr7 (27-111)||(34998524-34998608)
chr7 (51-98)||(45627468-45627515)
chr7 (60-112)||(8541426-8541478)
chr7 (27-98)||(32676804-32676873)
chr7 (27-98)||(39187987-39188056)
chr7 (27-94)||(10545004-10545069)
chr7 (33-108)||(30783518-30783589)
chr7 (53-98)||(30783425-30783470)
[»] chr6 (3 HSPs)
chr6 (48-111)||(7080149-7080212)
chr6 (53-98)||(994870-994915)
chr6 (51-97)||(25336967-25337013)
[»] chr4 (9 HSPs)
chr4 (51-113)||(20679895-20679957)
chr4 (45-108)||(39503553-39503616)
chr4 (27-107)||(47541838-47541918)
chr4 (27-99)||(47833503-47833575)
chr4 (51-98)||(17056624-17056671)
chr4 (48-98)||(15827175-15827225)
chr4 (53-99)||(46550644-46550690)
chr4 (61-98)||(36364925-36364962)
chr4 (27-95)||(46381481-46381549)
[»] scaffold1339 (1 HSPs)
scaffold1339 (48-112)||(106-170)
[»] chr5 (10 HSPs)
chr5 (27-111)||(8026463-8026547)
chr5 (27-111)||(2976475-2976555)
chr5 (27-111)||(10719742-10719824)
chr5 (48-111)||(33758790-33758851)
chr5 (61-113)||(34849436-34849488)
chr5 (51-110)||(30319804-30319863)
chr5 (48-87)||(37872252-37872291)
chr5 (27-112)||(20524633-20524716)
chr5 (63-111)||(2467001-2467049)
chr5 (62-98)||(21239430-21239466)
[»] chr1 (12 HSPs)
chr1 (61-111)||(21356790-21356840)
chr1 (61-112)||(39744230-39744281)
chr1 (48-116)||(41725479-41725547)
chr1 (63-110)||(41942778-41942825)
chr1 (27-90)||(7101382-7101447)
chr1 (27-111)||(24241474-24241556)
chr1 (27-111)||(34773448-34773532)
chr1 (51-97)||(2344979-2345025)
chr1 (53-99)||(26764620-26764666)
chr1 (53-98)||(23238482-23238527)
chr1 (27-94)||(16253042-16253107)
chr1 (27-95)||(38746048-38746115)
[»] chr8 (12 HSPs)
chr8 (53-107)||(16782441-16782495)
chr8 (27-111)||(30208195-30208278)
chr8 (29-111)||(35179156-35179236)
chr8 (27-113)||(40719925-40720011)
chr8 (27-95)||(31333191-31333258)
chr8 (51-95)||(34514565-34514609)
chr8 (27-98)||(42056689-42056758)
chr8 (27-98)||(39402056-39402127)
chr8 (59-97)||(17097645-17097683)
chr8 (27-111)||(36132672-36132754)
chr8 (53-97)||(5594794-5594838)
chr8 (59-99)||(16782323-16782363)
[»] scaffold0095 (1 HSPs)
scaffold0095 (27-98)||(35375-35446)
[»] scaffold0830 (1 HSPs)
scaffold0830 (48-82)||(5428-5462)


Alignment Details
Target: chr2 (Bit Score: 94; Significance: 7e-46; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 6512111 - 6512224
Alignment:
Q  27 tgattgaatattttaggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccataaaataatacctcataaaagagtggtgt 126  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  6512111 tgattgaatattttagagttcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccatggaataatacctcataaaagagtggtgt 6512210  T
Q  127 taaagtaagtgttg 140  Q
    ||||||||||||||    
T  6512211 taaagtaagtgttg 6512224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 230 - 307
Target Start/End: Original strand, 6512437 - 6512514
Alignment:
Q  230 caacgatatagaaagtgagtcttaaatgactaagagtacaaatgtctagtaaggtatatgacctttgagcaattttta 307  Q
    |||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6512437 caacaatatagaaagtgagtcttaaaggactgagagtacaaatgtctagtaaggtatatgacctttgagcaattttta 6512514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 30706183 - 30706250
Alignment:
Q  27 tgattgaatattttaggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccat 98  Q
    ||||||||||||||| | | ||||||||||||||    ||||||||||||||||||||||||||||||||||    
T  30706183 tgattgaatattttaaggaccatctttttatgtg----tgtccaaacactattgatttggtcttgtgaccat 30706250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 36400937 - 36400866
Alignment:
Q  27 tgattgaatattttaggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccat 98  Q
    ||||||||||||||  | |  |||||||||||||||||||| |||||| |||||||||||||||| ||||||    
T  36400937 tgattgaatattttgaggagaatctttttatgtgtgtgtgttcaaacattattgatttggtcttgagaccat 36400866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 3870106 - 3870020
Alignment:
Q  27 tgattgaatattttaggaatcatctttttatgt--gtgtgtgtccaaacactattgatttggtcttgtgaccataaaataatacctc 111  Q
    ||||||||||||||  | |  ||||||||||||  ||||||||| ||||| |||||||||||||||||||||||  || ||||||||    
T  3870106 tgattgaatattttgaggagaatctttttatgtctgtgtgtgtcaaaacattattgatttggtcttgtgaccatggaagaatacctc 3870020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 11028857 - 11028791
Alignment:
Q  27 tgattgaatattttaggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgac 95  Q
    ||||||||||||||| | |  ||||||||||||||||||  ||||||| ||||||||||||||| ||||    
T  11028857 tgattgaatattttaaggagaatctttttatgtgtgtgt--ccaaacattattgatttggtcttttgac 11028791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 28734129 - 28734166
Alignment:
Q  59 tgtgtgtgtccaaacactattgatttggtcttgtgacc 96  Q
    |||||||||||||||| |||||||||||||||||||||    
T  28734129 tgtgtgtgtccaaacattattgatttggtcttgtgacc 28734166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 9009033 - 9008974
Alignment:
Q  53 tttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccataaaataatacctca 112  Q
    ||||||||  |||||||||| |||||| |||||||||||||||||| ||| |||| ||||    
T  9009033 tttatgtgaatgtgtccaaaaactatttatttggtcttgtgaccatgaaagaatagctca 9008974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 3647474 - 3647428
Alignment:
Q  51 tttttatgtgtgtgtgtccaaacactattgatttggtcttgtgacca 97  Q
    |||||||||||  |||| |||||| ||||||||||||||||||||||    
T  3647474 tttttatgtgttcgtgttcaaacattattgatttggtcttgtgacca 3647428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 37721492 - 37721443
Alignment:
Q  64 gtgtccaaacactattgatttggtcttgtgaccataaaataatacctcat 113  Q
    ||||||||| | |||||||||||||||||||||||  || ||||||||||    
T  37721492 gtgtccaaatattattgatttggtcttgtgaccatggaagaatacctcat 37721443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 29685522 - 29685582
Alignment:
Q  51 tttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccataaaataatacctc 111  Q
    |||||||||||||||| ||||||||| ||  ||||||| |||||||||  || ||||||||    
T  29685522 tttttatgtgtgtgtgaccaaacactttttctttggtcatgtgaccatggaagaatacctc 29685582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 38879574 - 38879529
Alignment:
Q  48 atctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgac 95  Q
    ||||||||||||||  ||||||||||| |||| |||||||||||||||    
T  38879574 atctttttatgtgt--gtgtccaaacattattaatttggtcttgtgac 38879529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 47169326 - 47169243
Alignment:
Q  27 tgattgaatattttaggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccataaaataatacct 110  Q
    ||||||||||||||| | | | |||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||    
T  47169326 tgattgaatattttatggaccctctttttatgtgtgtgtgtccaaacactattgatttggtcttatgactataaaagaatacct 47169243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 2008479 - 2008412
Alignment:
Q  27 tgattgaatattttaggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtga 94  Q
    ||||||||||||||  | |  |||||||||| |||||||||||||| | |||||||||||||||||||    
T  2008479 tgattgaatattttgaggagaatctttttatatgtgtgtgtccaaatattattgatttggtcttgtga 2008412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 1994907 - 1994949
Alignment:
Q  57 tgtgtgtgtgtccaaacactattgatttggtcttgtgaccata 99  Q
    ||||||| |||||||||| ||||||||||||||||||||||||    
T  1994907 tgtgtgtttgtccaaacattattgatttggtcttgtgaccata 1994949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 44880302 - 44880253
Alignment:
Q  59 tgtgtgtgtccaaacactattgatttggtcttgtgaccataaaataatac 108  Q
    ||||||||| |||||| ||||||||||||||||||||||| ||| |||||    
T  44880302 tgtgtgtgttcaaacattattgatttggtcttgtgaccatgaaagaatac 44880253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 22220288 - 22220203
Alignment:
Q  27 tgattgaatattttaggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccataaaataatacctcata 114  Q
    ||||||||||||||  |||  ||||||||||||||||||   |||||| |||||||||| |||| |||||||  || |||||||||||    
T  22220288 tgattgaatattttgagaagaatctttttatgtgtgtgta--caaacattattgatttgatcttttgaccatggaagaatacctcata 22220203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 2008522 - 2008568
Alignment:
Q  53 tttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccata 99  Q
    |||||||||||||| ||||||||||||  ||||||| ||||||||||    
T  2008522 tttatgtgtgtgtggccaaacactatttctttggtcctgtgaccata 2008568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 45805582 - 45805625
Alignment:
Q  47 catctttttatgtgtgtgtgtccaaacactattgatttggtcttgt 92  Q
    ||||||||||||||||||||  ||||||||||||||||| ||||||    
T  45805582 catctttttatgtgtgtgtg--caaacactattgatttgatcttgt 45805625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 112
Target Start/End: Complemental strand, 14785005 - 14784921
Alignment:
Q  28 gattgaatattttaggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccataaaataatacctca 112  Q
    |||||||||||||   ||| |||| ||||||||||||   |||||||||||| |||||||| || ||||||| || |||| ||||    
T  14785005 gattgaatattttgataataatctctttatgtgtgtgcccccaaacactatttatttggtcctgcgaccatagaaaaatagctca 14784921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 22831227 - 22831271
Alignment:
Q  53 tttatgtgtgtgtgtccaaacactattgatttggtcttgtgacca 97  Q
    ||||| |||||||||||||| | ||||||||| ||||||||||||    
T  22831227 tttatatgtgtgtgtccaaatattattgatttagtcttgtgacca 22831271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 46023208 - 46023139
Alignment:
Q  27 tgattgaatattttaggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgacc 96  Q
    |||||||||||||||  || |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  46023208 tgattgaatattttaaaaaccatctttttatgtgtgtgtgtccaaacaatattgatttggtcttgtgacc 46023139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 34998608 - 34998524
Alignment:
Q  27 tgattgaatattttaggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccataaaataatacctc 111  Q
    ||||||||||||||  | |  |||||||||| |||||||||||||||| |||||||||||||||||||||||  || ||||||||    
T  34998608 tgattgaatattttgaggagaatctttttatatgtgtgtgtccaaacattattgatttggtcttgtgaccatggaagaatacctc 34998524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 45627468 - 45627515
Alignment:
Q  51 tttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccat 98  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||    
T  45627468 tttttatgtgtgtgtgtcaaaacactattgatttggtcctgtgaccat 45627515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 8541478 - 8541426
Alignment:
Q  60 gtgtgtgtccaaacactattgatttggtcttgtgaccataaaataatacctca 112  Q
    |||||||| |||||| ||||||||||||||||||||||||||| |||| ||||    
T  8541478 gtgtgtgttcaaacattattgatttggtcttgtgaccataaaagaatatctca 8541426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 32676873 - 32676804
Alignment:
Q  27 tgattgaatattttaggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccat 98  Q
    |||||||||| |||||| | ||||||||||  ||||| |  |||||||||||||||||||||||||||||||    
T  32676873 tgattgaatagtttagggaccatctttttacatgtgtat--ccaaacactattgatttggtcttgtgaccat 32676804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 39187987 - 39188056
Alignment:
Q  27 tgattgaatattttaggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccat 98  Q
    ||||||||||||||| | | |||||||||||| ||||  ||||||| ||||||||||||||||| |||||||    
T  39187987 tgattgaatattttaaggaccatctttttatgcgtgt--gtccaaatactattgatttggtcttctgaccat 39188056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 10545069 - 10545004
Alignment:
Q  27 tgattgaatattttaggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtga 94  Q
    |||||||||||||||  ||| ||||||||||||  |||| |||||| |||||||||| ||||||||||    
T  10545069 tgattgaatattttaaaaataatctttttatgt--gtgtctccaaatactattgattcggtcttgtga 10545004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 30783518 - 30783589
Alignment:
Q  33 aatattttaggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccataaaataatac 108  Q
    ||||||||| ||| ||||||||||||||    ||||||||||||||| |||| ||||| |||||||| || |||||    
T  30783518 aatattttaagaaccatctttttatgtg----tgtccaaacactattaatttagtcttctgaccatagaagaatac 30783589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 30783470 - 30783425
Alignment:
Q  53 tttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccat 98  Q
    |||||||||||||| ||||||||| || |||||||| |||||||||    
T  30783470 tttatgtgtgtgtgaccaaacactttttatttggtcatgtgaccat 30783425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 7080212 - 7080149
Alignment:
Q  48 atctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccataaaataatacctc 111  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||| || ||||||||    
T  7080212 atctttttatgtgtgtgtgtccaaacattattgatttggtcatgtgaccatagaagaatacctc 7080149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 994870 - 994915
Alignment:
Q  53 tttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccat 98  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||    
T  994870 tttatgtgtgtgtgaccaaacactatttatttggtcttgtgaccat 994915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 25336967 - 25337013
Alignment:
Q  51 tttttatgtgtgtgtgtccaaacactattgatttggtcttgtgacca 97  Q
    |||||||||||| ||||||||||| |||||||||| |||||||||||    
T  25336967 tttttatgtgtgcgtgtccaaacattattgatttgatcttgtgacca 25337013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 20679895 - 20679957
Alignment:
Q  51 tttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccataaaataatacctcat 113  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||| ||| ||||||||||    
T  20679895 tttttatgtgtgtgtgtccaaacactattgatttgatcttgagaccatgaaagaatacctcat 20679957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 39503553 - 39503616
Alignment:
Q  45 atcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccataaaataatac 108  Q
    ||||||||||||||||| ||||| |||||||||||||||| |||||||||||||| || |||||    
T  39503553 atcatctttttatgtgtatgtgttcaaacactattgatttagtcttgtgaccatagaagaatac 39503616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 47541838 - 47541918
Alignment:
Q  27 tgattgaatatttt-aggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccataaaataata 107  Q
    |||||||||||||| |||||  ||||||||||||||||||||||||| | |||||||||| |||||||| ||| ||| ||||    
T  47541838 tgattgaatattttgaggaaa-atctttttatgtgtgtgtgtccaaatattattgatttgatcttgtgatcatgaaagaata 47541918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 47833575 - 47833503
Alignment:
Q  27 tgattgaatattttaggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccata 99  Q
    ||||||||||||||  | ||  ||||||||||||||| ||||||| |||||| |||||||||||| |||||||    
T  47833575 tgattgaatattttgaggatggtctttttatgtgtgtatgtccaaccactatagatttggtcttgcgaccata 47833503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 17056671 - 17056624
Alignment:
Q  51 tttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccat 98  Q
    ||||||| ||||||| | ||||||||||||||||||||||||||||||    
T  17056671 tttttatatgtgtgtattcaaacactattgatttggtcttgtgaccat 17056624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 15827175 - 15827225
Alignment:
Q  48 atctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccat 98  Q
    |||||||||||||||||| | |||| | |||||||| ||||||||||||||    
T  15827175 atctttttatgtgtgtgtattcaaatattattgattcggtcttgtgaccat 15827225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 46550690 - 46550644
Alignment:
Q  53 tttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccata 99  Q
    |||||||||||||| ||||||||| ||  ||||||||||||||||||    
T  46550690 tttatgtgtgtgtgaccaaacactttttctttggtcttgtgaccata 46550644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 36364925 - 36364962
Alignment:
Q  61 tgtgtgtccaaacactattgatttggtcttgtgaccat 98  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  36364925 tgtgtgtccaaacattattgatttggtcttgcgaccat 36364962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 46381549 - 46381481
Alignment:
Q  27 tgattgaatattttaggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgac 95  Q
    ||||||||| ||||  | || |||| ||||||| ||||||  ||||||||||| |||||||||||||||    
T  46381549 tgattgaatgtttttaggataatctctttatgtatgtgtgctcaaacactatttatttggtcttgtgac 46381481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1339 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 106 - 170
Alignment:
Q  48 atctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccataaaataatacctca 112  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||  || |||||||||    
T  106 atctttttatgtatgtgtgtccaaacactattgatttggtcttgtgatcatggaagaatacctca 170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 8026547 - 8026463
Alignment:
Q  27 tgattgaatattttaggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccataaaataatacctc 111  Q
    |||||||||||||||   | ||||||||||||||| || ||||||||| |||||||||||||||||||| ||| || ||||||||    
T  8026547 tgattgaatattttaaagaccatctttttatgtgtatgcgtccaaacagtattgatttggtcttgtgactatagaagaatacctc 8026463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 2976475 - 2976555
Alignment:
Q  27 tgattgaatattttaggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccataaaataatacctc 111  Q
    ||||||||||||||| | | ||||||||||||||    |||||||||||||||||||||||||| |||||||  || ||||||||    
T  2976475 tgattgaatattttaaggaccatctttttatgtg----tgtccaaacactattgatttggtcttatgaccatggaagaatacctc 2976555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 10719824 - 10719742
Alignment:
Q  27 tgattgaatattttaggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccataaaataatacctc 111  Q
    ||||||||||||||| | | ||| |||||||||||||||  |||||||||||| |||||||||| |||||||  || ||||||||    
T  10719824 tgattgaatattttaaggaccatttttttatgtgtgtgt--ccaaacactattaatttggtcttatgaccatggaagaatacctc 10719742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 33758851 - 33758790
Alignment:
Q  48 atctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccataaaataatacctc 111  Q
    ||||||||||||||  ||||||||||| |||||||||| ||||||||||||  || ||||||||    
T  33758851 atctttttatgtgt--gtgtccaaacagtattgatttgatcttgtgaccatggaagaatacctc 33758790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 34849488 - 34849436
Alignment:
Q  61 tgtgtgtccaaacactattgatttggtcttgtgaccataaaataatacctcat 113  Q
    |||||||| ||||| ||||||||| ||||| ||||||||||| ||||||||||    
T  34849488 tgtgtgtcgaaacattattgatttcgtcttatgaccataaaaaaatacctcat 34849436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 30319863 - 30319804
Alignment:
Q  51 tttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccataaaataatacct 110  Q
    |||||||||| | || |||||||| ||||||||||||||||||||||  ||| |||||||    
T  30319863 tttttatgtgcgcgtatccaaacattattgatttggtcttgtgaccaagaaaaaatacct 30319804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 37872252 - 37872291
Alignment:
Q  48 atctttttatgtgtgtgtgtccaaacactattgatttggt 87  Q
    ||||||||||||||||||||||||| | ||||||||||||    
T  37872252 atctttttatgtgtgtgtgtccaaatattattgatttggt 37872291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 20524633 - 20524716
Alignment:
Q  27 tgattgaatattttaggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccataaaataatacctca 112  Q
    |||||||||||||||   |||||||||| |||||  |||||||||||| ||||||||| || |||||| |||  || |||||||||    
T  20524633 tgattgaatattttaaacatcatcttttgatgtg--tgtgtccaaacagtattgatttagttttgtgatcatggaagaatacctca 20524716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 2467049 - 2467001
Alignment:
Q  63 tgtgtccaaacactattgatttggtcttgtgaccataaaataatacctc 111  Q
    |||||||||| ||||||||||||||||| |||||||  || ||||||||    
T  2467049 tgtgtccaaatactattgatttggtcttatgaccatgcaagaatacctc 2467001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 21239430 - 21239466
Alignment:
Q  62 gtgtgtccaaacactattgatttggtcttgtgaccat 98  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  21239430 gtgtgtccaaagactatttatttggtcttgtgaccat 21239466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 21356840 - 21356790
Alignment:
Q  61 tgtgtgtccaaacactattgatttggtcttgtgaccataaaataatacctc 111  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  21356840 tgtgtgtccaaacattattgatttggtcttgtgaccataaaagaatacctc 21356790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 39744230 - 39744281
Alignment:
Q  61 tgtgtgtccaaacactattgatttggtcttgtgaccataaaataatacctca 112  Q
    |||||||||||||| |||||||||||||||||||||||| || |||||||||    
T  39744230 tgtgtgtccaaacattattgatttggtcttgtgaccatagaagaatacctca 39744281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 41725547 - 41725479
Alignment:
Q  48 atctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccataaaataatacctcataaa 116  Q
    ||||| |||||| |||||||||||| |||||| ||||||||||||||||||| || |||| ||| ||||    
T  41725547 atcttcttatgtttgtgtgtccaaatactatttatttggtcttgtgaccatagaagaatagctcctaaa 41725479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 41942825 - 41942778
Alignment:
Q  63 tgtgtccaaacactattgatttggtcttgtgaccataaaataatacct 110  Q
    |||||||||||| ||||||||||||||||||||||| ||| |||||||    
T  41942825 tgtgtccaaacattattgatttggtcttgtgaccatgaaagaatacct 41942778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 7101382 - 7101447
Alignment:
Q  27 tgattgaatattttaggaatcatctttttatgtgtgtg--tgtccaaacactattgatttggtctt 90  Q
    ||||||||||||||| | | ||||||||||||||||||  ||| | ||||||||||||||||||||    
T  7101382 tgattgaatattttaaggaccatctttttatgtgtgtgtatgttccaacactattgatttggtctt 7101447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 24241556 - 24241474
Alignment:
Q  27 tgattgaatattttaggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccataaaataatacctc 111  Q
    ||||||||||||||  | |  ||||||||||||||||||  ||||||| ||||||||||||| |||||||||  || ||||||||    
T  24241556 tgattgaatattttgaggagaatctttttatgtgtgtgt--ccaaacattattgatttggtcatgtgaccatggaagaatacctc 24241474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 34773448 - 34773532
Alignment:
Q  27 tgattgaatattttaggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccataaaataatacctc 111  Q
    ||||||||||||||  | |  |||||||||||||||| ||| |||||| |||||| |||||||||||| |||  || ||||||||    
T  34773448 tgattgaatattttgaggagaatctttttatgtgtgtatgtgcaaacattattgagttggtcttgtgatcatggaagaatacctc 34773532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 2345025 - 2344979
Alignment:
Q  51 tttttatgtgtgtgtgtccaaacactattgatttggtcttgtgacca 97  Q
    ||||||||||||  | |||||||| ||||||||||||||||||||||    
T  2345025 tttttatgtgtgcttatccaaacattattgatttggtcttgtgacca 2344979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 26764620 - 26764666
Alignment:
Q  53 tttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccata 99  Q
    |||||||||||||| ||||||||||||  ||||| ||||||||||||    
T  26764620 tttatgtgtgtgtgaccaaacactatttgtttggccttgtgaccata 26764666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 23238482 - 23238527
Alignment:
Q  53 tttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccat 98  Q
    |||| ||| ||||||||||| |||||| ||||||||||||||||||    
T  23238482 tttacgtgagtgtgtccaaagactatttatttggtcttgtgaccat 23238527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 16253107 - 16253042
Alignment:
Q  27 tgattgaatattttaggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtga 94  Q
    ||||||||||||||  | |  |||||||||||||||| |  ||||||| |||||||||||||||||||    
T  16253107 tgattgaatattttgaggagaatctttttatgtgtgtct--ccaaacattattgatttggtcttgtga 16253042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 38746048 - 38746115
Alignment:
Q  27 tgattgaatattttaggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgac 95  Q
    ||||||||||||||  | |  |||| |||||| ||||||||||||| | ||||||||||||||||||||    
T  38746048 tgattgaatattttgaggagaatctatttatgggtgtgtgtccaaa-attattgatttggtcttgtgac 38746115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 16782441 - 16782495
Alignment:
Q  53 tttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccataaaataata 107  Q
    ||||||||||| |||||||| |||||| |||||||||||||||||||||| ||||    
T  16782441 tttatgtgtgtatgtccaaagactatttatttggtcttgtgaccataaaagaata 16782495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 30208278 - 30208195
Alignment:
Q  27 tgattgaatattttaggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccataaaataatacctc 111  Q
    ||||||||||||| ||||   |||||||||||| | |||||||||||| ||||||||||||||| |||||||  || ||||||||    
T  30208278 tgattgaatatttgaggaga-atctttttatgtatatgtgtccaaacattattgatttggtcttatgaccatggaagaatacctc 30208195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 35179236 - 35179156
Alignment:
Q  29 attgaatattttaggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccataaaataatacctc 111  Q
    ||||||||||||  |||  |||||||||| |||||||  ||||||| ||||||||||||||| ||||||| ||| ||||||||    
T  35179236 attgaatattttgagaagaatctttttatatgtgtgt--ccaaacattattgatttggtcttatgaccatgaaagaatacctc 35179156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 40719925 - 40720011
Alignment:
Q  27 tgattgaatattttaggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccataaaataatacctcat 113  Q
    ||||||||||||||  | |  ||||||||||||||||||||||||||| |||| ||||  |||| |||||||  || ||||||||||    
T  40719925 tgattgaatattttgaggagaatctttttatgtgtgtgtgtccaaacattattaatttaatcttttgaccatggaagaatacctcat 40720011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 31333191 - 31333258
Alignment:
Q  27 tgattgaatattttaggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgac 95  Q
    ||||||||||||||| | |  ||||||||||||||||||  ||||||| | ||||||||||||||||||    
T  31333191 tgattgaatattttaagtaaaatctttttatgtgtgtgtaaccaaaca-ttttgatttggtcttgtgac 31333258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 34514565 - 34514609
Alignment:
Q  51 tttttatgtgtgtgtgtccaaacactattgatttggtcttgtgac 95  Q
    |||||||||||||||| ||||||||||||  ||||||||||||||    
T  34514565 tttttatgtgtgtgtgaccaaacactatttgtttggtcttgtgac 34514609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 42056758 - 42056689
Alignment:
Q  27 tgattgaatattttaggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccat 98  Q
    |||||||||||||||   |  |||||||||||| |||||  ||||||| |||||||||||||||||||||||    
T  42056758 tgattgaatattttaaagagaatctttttatgtttgtgt--ccaaacattattgatttggtcttgtgaccat 42056689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 39402056 - 39402127
Alignment:
Q  27 tgattgaatattttaggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccat 98  Q
    ||||||||||||||  | |  |||||||||||| ||| ||| |||| | |||||||||||||||||||||||    
T  39402056 tgattgaatattttgaggagaatctttttatgtatgtatgttcaaatattattgatttggtcttgtgaccat 39402127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 17097645 - 17097683
Alignment:
Q  59 tgtgtgtgtccaaacactattgatttggtcttgtgacca 97  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  17097645 tgtgtgtgtccaaacaccatttatttggtcttgtgacca 17097683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 36132754 - 36132672
Alignment:
Q  27 tgattgaatattttaggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccataaaataatacctc 111  Q
    ||||| |||||||||  || |||||||||||||  |||| |||||| |||||| |||| |||||||||| ||| || ||||||||    
T  36132754 tgattaaatattttaaaaaccatctttttatgt--gtgtatccaaatactattaatttagtcttgtgactatagaagaatacctc 36132672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 5594838 - 5594794
Alignment:
Q  53 tttatgtgtgtgtgtccaaacactattgatttggtcttgtgacca 97  Q
    ||||| |||||||||||||| | ||||||||| ||||||||||||    
T  5594838 tttatatgtgtgtgtccaaatattattgatttagtcttgtgacca 5594794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 16782363 - 16782323
Alignment:
Q  59 tgtgtgtgtccaaacactattgatttggtcttgtgaccata 99  Q
    ||||||||||||||||||||| |||||||||| ||| ||||    
T  16782363 tgtgtgtgtccaaacactatttatttggtcttatgatcata 16782323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 35446 - 35375
Alignment:
Q  27 tgattgaatattttaggaatcatctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgaccat 98  Q
    ||||||||||||||  | |  |||||||||||| ||| ||| |||| | |||||||||||||||||||||||    
T  35446 tgattgaatattttgaggagaatctttttatgtatgtatgttcaaatattattgatttggtcttgtgaccat 35375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0830 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0830
Description:

Target: scaffold0830; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 82
Target Start/End: Original strand, 5428 - 5462
Alignment:
Q  48 atctttttatgtgtgtgtgtccaaacactattgat 82  Q
    |||||||||||| ||||||||||||||||||||||    
T  5428 atctttttatgtatgtgtgtccaaacactattgat 5462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University