View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3788-2-Insertion-4 (Length: 985)
Name: NF3788-2-Insertion-4
Description: NF3788-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3788-2-Insertion-4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 916; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 916; E-Value: 0
Query Start/End: Original strand, 7 - 985
Target Start/End: Original strand, 1791318 - 1792297
Alignment:
| Q |
7 |
aatcaattcatcaatggcgtcgtttgaactagtacctcccggtgatgccaaatccggagataaaatctttcgaaccaaatgcgctcagtgccacaccgtc |
106 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1791318 |
aatcaattcatcaatggcgtcgtttgaactagcacctcccggtgatgccaaatccggagataaaatctttcgaaccaaatgcgctcagtgccacactgtc |
1791417 |
T |
|
| Q |
107 |
gataagggcgctggtcacaaacaaggttagatcagtttctcatatttggatctctatgctattttttgaatttatgcaatataatgtttagatcttgaaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1791418 |
gataagggcgctggtcacaaacaaggttagatcagtttctcatatttggatctctatgttattttttgaatttatgcaatataatgtttagatcttgaaa |
1791517 |
T |
|
| Q |
207 |
ttaatctgtgattatacattgttttcaccttaatcattccatttccacatgttatgcaatttatgtctatgtgctgttatttgaatttcctgtacgttgc |
306 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1791518 |
ttaatcggtgattatacattgttttcaccttaatcgttccatttccacatgttatgcaatttatgtctatgtgctgttatttgaatttcctgtacgttgc |
1791617 |
T |
|
| Q |
307 |
tgttaattgtctttttatttctacgtggaaaatttggttgaaaccgtgcaacaaacttattgtgctctaaatttgagcattctatttaaatctgctttga |
406 |
Q |
| |
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||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1791618 |
tgttaattgtctttttatttcaatgtggaaaatttggttgaaaccgtgcaacaaacttgttgtgctctaaatttgagcattctatttaaatctgctttga |
1791717 |
T |
|
| Q |
407 |
tcctcattgaaaattatttattcgtaaatcgtaattcaaattttatattgatgttgttgatttatgattcgatggatttggatgtggatatcatctaata |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1791718 |
tcctcattgaaaattatttattcgtaaatcgtaattcaaattttatattgatgctgttgatttatgattcgatggatttggatgtggatatcatctaata |
1791817 |
T |
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| Q |
507 |
ttattgtctaggataatatttgatggatttactctgttattttcttgaaacagagaataaaaaagcttttgtatgaagagacactattgggaatacattg |
606 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
1791818 |
ttattgtctaggataatatttgatggatttactctgttattttcttgaaacagagaataaaaaagcttttctatgaagggacactattgggaatacattg |
1791917 |
T |
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| Q |
607 |
atttatgatttttataaaaattgtgcttattaaacaatttgatctcttcagatttaaaagatttgttgtcttttatataaaataaaaatatatcttttgt |
706 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1791918 |
atttatgatttttataaaaattgtgcttattaaacaatttgatctcttcagatttaaaagatatgttgtcttttatataaaataaaaatatatcttttgt |
1792017 |
T |
|
| Q |
707 |
cattaactacattagcagaagcattgtcactcgtggatcgtggaaaatagcgatttgtttaaattacacccatttcacaatattatgtactaatcgcaaa |
806 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1792018 |
cattaactacattagcagaagcattgtcaatcgtggatcgtggaaaatagcgatttgtttaaattacacccatttcaaaatattatgtactaatcgcaaa |
1792117 |
T |
|
| Q |
807 |
acaatagcgatttgttcaaattctgctttgacatagtgctgtaccgatgctgtagctgctaatgacaacattgatcagcagtctgattacccgtagttat |
906 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1792118 |
acaatagcgatttgttcaaattctgctttgacatagtgctgtaccgatgctgtagctgctaatgacaacattgatcagcagtctgattacccgtagttat |
1792217 |
T |
|
| Q |
907 |
ttcaatatttgattcgtaggtttactggcattttaaatgtcgctgtattattg-tgctattgatgtatcattagtgttcc |
985 |
Q |
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| T |
1792218 |
ttcaatatttgattcgtaggtttactggcattttaaatgtcgctgtattattgttgctattgatgtatcattagtgttcc |
1792297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 3e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 437 - 601
Target Start/End: Complemental strand, 11982940 - 11982774
Alignment:
| Q |
437 |
gtaattcaaattttatattgatgttg----ttgatttatgattcgatggatttggatgtggatatcatctaatattattgtctaggataatatttgatgg |
532 |
Q |
| |
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|||||||| |||||| ||||||| || |||||||||||||||||| |||||||| || | | ||||| || ||| ||||||||||||||||||| |
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| T |
11982940 |
gtaattcagattttaaattgatgatgccatttgatttatgattcgatgaatttggatatgaacttttactaatgttgttgactaggataatatttgatgg |
11982841 |
T |
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| Q |
533 |
atttactctgttattttcttgaaacagagaataaaaaagcttttgtatgaagagacactattgggaata |
601 |
Q |
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| T |
11982840 |
atttactctgttattttgttgaaac--agaataaaaatgattttgtatgtagggacaatattgtgaata |
11982774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 801 - 833
Target Start/End: Complemental strand, 37538448 - 37538416
Alignment:
| Q |
801 |
cgcaaaacaatagcgatttgttcaaattctgct |
833 |
Q |
| |
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| T |
37538448 |
cgcaaaacaatagcgatttgttcaaattctgct |
37538416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 30771084 - 30771140
Alignment:
| Q |
78 |
gaaccaaatgcgctcagtgccacaccgtcgataagggcgctggtcacaaacaaggtt |
134 |
Q |
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| T |
30771084 |
gaaccaagtgcgctcagtgccacaccgtcgacaaaggcgccggccacaaacaaggtt |
30771140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 799 - 828
Target Start/End: Complemental strand, 2732965 - 2732936
Alignment:
| Q |
799 |
atcgcaaaacaatagcgatttgttcaaatt |
828 |
Q |
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| T |
2732965 |
atcgcaaaacaatagcgatttgttcaaatt |
2732936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 804 - 833
Target Start/End: Original strand, 33390657 - 33390686
Alignment:
| Q |
804 |
aaaacaatagcgatttgttcaaattctgct |
833 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
33390657 |
aaaacaatagcgatttgttcaaattctgct |
33390686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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