View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3788-2-Insertion-5 (Length: 969)
Name: NF3788-2-Insertion-5
Description: NF3788-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3788-2-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 866; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 866; E-Value: 0
Query Start/End: Original strand, 7 - 930
Target Start/End: Complemental strand, 37609956 - 37609024
Alignment:
| Q |
7 |
atgttagagactccatgaagtgcttcagaccaccattcatattttggaatcccaagtctgcttacatcaacagcagaattcacaaggttaccaaccttct |
106 |
Q |
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| T |
37609956 |
atgttagagactccatgaagtgcttcagaccaccattcatattttggaatcccaagtctgcttacatcaacagcagaattcacaaggttaccaaccttct |
37609857 |
T |
|
| Q |
107 |
cttgcaatgtcaaccttctcacaaggtctttcactcttgcatccacactcaacttcttgttgcagaacccgtaattcgccaatgccggattcttggcaac |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37609856 |
cttgcaatgtcaaccttctcacaaggtctttcactcttgcatccacactcaacttcttgttgcagaacccgtaattcgccaatgccggattcttggcaac |
37609757 |
T |
|
| Q |
207 |
atcgcaggcgaaaactgcagatgtttggctcgaaactcgaccgcaactcaacaaaattgtggcaaacagaataaagaaacagaggaaaacagagacattc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37609756 |
atcgcaggcgaaaactgcagatgtttggctcgaaactcgaccgcaactcaacaaaattgtggcaaacagaataaagaaacagaggaaaacagagacattc |
37609657 |
T |
|
| Q |
307 |
ggtgttctgttttcaacagaggccattgtgaccttgagaatttgaaaacacaaaaataagtaaaaggttatgcttgtattgagtctgctactaaattata |
406 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37609656 |
ggtgttctgttttcaacataagccattgtgaccttgagaatttgaaaacacaaaaataagtaaaaggttatgcttgtattgagtctgctactaaattata |
37609557 |
T |
|
| Q |
407 |
tatgtcatattagagggtgtagaaa-----------cacattttttagtagcccgtgatgggtgttgggagtgaaagaaagaggactctattatatgtag |
495 |
Q |
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| T |
37609556 |
tatgtcatattagagggtgtagaaaaatgctaataacacattttttagtagcccgtgatgggtgttgggagtgaaagaaagaggactctattatatgtag |
37609457 |
T |
|
| Q |
496 |
ttgcttttggaagagagtgacaacatgggaaggaatctctgtggctgtgtagcttaaactagtccgtgaaaagctgaaataaaagagagaaaattctatg |
595 |
Q |
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| T |
37609456 |
ttgcttttggaagagagtgacaacatgggaaggaatctctgtggctgtgtagcttaaactagtccgtgaaaagctgaaataaaagagagaaaattctatg |
37609357 |
T |
|
| Q |
596 |
taccatggagagtgtttttgtttggaagctcaacttgcaacatattaatagtataagataagataacattattacattgttgtctaatatttataacatc |
695 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37609356 |
taccatggagagtgtttttgtttggaagctcaacttgcaacatattaatagtataagataagataacattattacattgttgtctaatatttataacaac |
37609257 |
T |
|
| Q |
696 |
aacaataagatatggcttgttttctcactatctttatttagcattatttttaggaaaataattgggtgacatcttgaaaataatgtatacatcttgaaag |
795 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37609256 |
aacaataagatttggcttgttttctcactatctttatttagcattatttttaggaaaataattgggtgacatcttgaaaataatgtatacatcttgaaag |
37609157 |
T |
|
| Q |
796 |
agaaatagttgaaatgagtaatttgatagaattgatatcttggtgatgtgataggaagaaaaagatagagatacaatgagtttgttagtttattattagt |
895 |
Q |
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|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37609156 |
ag--agagttgaaatgagtaatttgatagaattgatatcttggtgatgtgataggaagaaaaagatagagatacaatgagtttgttagtttattattagt |
37609059 |
T |
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| Q |
896 |
ttgttagtttattaattttacttaatctcattcat |
930 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
37609058 |
ttgttagtttattaattttacttaatctcattcat |
37609024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 1371323 - 1371432
Alignment:
| Q |
7 |
atgttagagactccatgaagtgcttcagaccaccattcatattttggaatcccaagtctgcttacatcaacagcagaattcacaaggttaccaaccttct |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || || ||||||||||| || ||||||| || | ||||| |
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| T |
1371323 |
atgttagagactccatgaagtgcttcagaccaccattcatactttggtatcccaagtctactcacttcaacagcagagtttccaaggttccctatcttct |
1371422 |
T |
|
| Q |
107 |
cttgcaatgt |
116 |
Q |
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|||||||||| |
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| T |
1371423 |
cttgcaatgt |
1371432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 828 - 866
Target Start/End: Complemental strand, 7210430 - 7210392
Alignment:
| Q |
828 |
tgatatcttggtgatgtgataggaagaaaaagatagaga |
866 |
Q |
| |
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|||||||||||||| |||||||||||| ||||||||||| |
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| T |
7210430 |
tgatatcttggtgacgtgataggaagagaaagatagaga |
7210392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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