View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3788-2-Insertion-6 (Length: 913)
Name: NF3788-2-Insertion-6
Description: NF3788-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3788-2-Insertion-6 |
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| [»] scaffold0051 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 692; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 692; E-Value: 0
Query Start/End: Original strand, 8 - 909
Target Start/End: Complemental strand, 6374649 - 6373727
Alignment:
| Q |
8 |
gaaaactcattcgacatgttctttaaatgtaagtttgttttcatgatttggtgctggtttgcttccattcttgattctacactgcattttcaatcaatt- |
106 |
Q |
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|||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6374649 |
gaaaactcattccacttgttctttgaatgtaagtttgttttcatgatttggtgctggtttgcttccattcttgattctacactgcattttcaatcaattg |
6374550 |
T |
|
| Q |
107 |
aggaaatttggaccatttatgatagaggctggtcacctcagtgcaaaactgtgatacaggccaccattgttaacatctttagcacagtttggtactcaag |
206 |
Q |
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|||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6374549 |
aggacatttggaccatttgtgatagaggatggtcacctcagtgcaaaactgtgatacatgccaccattgttaacatctttagcacagtttggtactcaag |
6374450 |
T |
|
| Q |
207 |
gaaccaatgcagatttcaagactgtaaacctaattggcat----------------tca-atctgcagtcaatctttcagtgaacaatacttccaaggtt |
289 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||| |||||||||||| |
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| T |
6374449 |
gaaccaatgcagatttcaagactgtaaacctaattggcagcttgcaattaacaacatcatatctgcagtcaatctttcagggaacaacacttccaaggtt |
6374350 |
T |
|
| Q |
290 |
tccaattcatctgtcagagatttagtcaccttaaagaaatttgatgtcatcattcaccctcctaagcctgttagcatcaaggaagttatttggtctcctc |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6374349 |
tccaattcatctgtcagagatttagtcaccttaaagaaatttgatgtcatcattcaccctcctaagcctgttagcatcaaggaagttatttggtctcctc |
6374250 |
T |
|
| Q |
390 |
cctactcagaatggattaagtgtaacactgatggagcagctaattcaagtacctcagcttgtggaggaatttttagggattgcaatgcaaatctgctttc |
489 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6374249 |
cctactcagaatggattaagtgtaacactgatggagcagctaattcaactacctcagcttgtggaggaatttttagggattgcaatgcaaatctgatttc |
6374150 |
T |
|
| Q |
490 |
ttgttttgctgaaaatcttggaggttgcagtgcctatcatgctgagcgctttcagaagtaatgagggccactgagattgcattccaaagaaattggaaga |
589 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6374149 |
ttgttttgctgaaaatcttggaggttgcagtgcctatcatgctga--gctttcagcagtaatgagggccactgagattgcattccaaagaaattggaaga |
6374052 |
T |
|
| Q |
590 |
atgtgtggattgaatcagattcttcattagtagttatggccttcaacaatgattccatgattccttgcaatttaagaaacggatggttgaattgcaagaa |
689 |
Q |
| |
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|| ||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
6374051 |
atatgtgggttaaataagattcttcattagtagttatggccttcaacaatgattccatgattccttgcgatttaagaaacagatggttgaattgcaagaa |
6373952 |
T |
|
| Q |
690 |
tctcctttatcatataaaatgttttgaggtagcagcactttgttgcacctctttttggtt-----------taaaaaatagatgatccctaaaacaatta |
778 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6373951 |
tctcctttatcatataaaatg--ttgaggtagcagcactttgttgcacctctttttggtttaaaaaataaataaaaaatagatgatccctaaaacaatta |
6373854 |
T |
|
| Q |
779 |
gggtggaaaagggaaatggtacataagaataccgagactaccatttttagaaatgattgattagtagtaaacaaaagcagaaagtattataacatcagca |
878 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| || |
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| T |
6373853 |
gggtggaaaagggaaatggtacataagaatactgagactaccatttttagaaatgattgat---tagtaaacaaaagcggaaagtattataacatcaaca |
6373757 |
T |
|
| Q |
879 |
caagcaatcaaatttaatcttatgctgatgt |
909 |
Q |
| |
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|||||||||||| |||||||||||||||||| |
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| T |
6373756 |
caagcaatcaaa-ttaatcttatgctgatgt |
6373727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 40 - 227
Target Start/End: Original strand, 16092 - 16280
Alignment:
| Q |
40 |
gtttgttttcatgatttggtgctggtttgcttccattcttgattctacactgcattttcaatcaatt-aggaaatttggaccatttatgatagaggctgg |
138 |
Q |
| |
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||||| |||||||||||||||||||||| | || || |||||||| || | ||||||||||| ||| ||||||| |||||||||| ||||||| | ||| |
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| T |
16092 |
gtttgctttcatgatttggtgctggttttcctcaatccttgattcaactttacattttcaatctattgaggaaatatggaccatttgtgatagatgttgg |
16191 |
T |
|
| Q |
139 |
tcacctcagtgcaaaactgtgatacaggccaccattgttaacatctttagcacagtttggtactcaaggaaccaatgcagatttcaaga |
227 |
Q |
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||||| ||||||||||| || || | ||| | |||||||| || || |||||| | |||||| | || |||||||||||||||||||| |
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| T |
16192 |
tcaccacagtgcaaaacagtaattaaagcctctattgttaatattttcagcacaatatggtacgctagaaaccaatgcagatttcaaga |
16280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 416 - 567
Target Start/End: Complemental strand, 24454160 - 24454011
Alignment:
| Q |
416 |
actgatggagcagctaattcaagtacctcagcttgtggaggaatttttagggattgcaatgcaaatctgctttcttgttttgctgaaaatcttggaggtt |
515 |
Q |
| |
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|||||||||||||||| ||||| ||| ||||| |||||||| || |||||||| | || | |||||||| ||||| ||||||||||| | || || | |
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| T |
24454160 |
actgatggagcagctacttcaattacttcagcctgtggagggatatttagggactctaactctaatctgctctcttgctttgctgaaaacttaggtggct |
24454061 |
T |
|
| Q |
516 |
gcagtgcctatcatgctgagcgctttcagaagtaatgagggccactgagatt |
567 |
Q |
| |
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||||||||||||||||||| ||| |||| |||||||| ||||||||||||| |
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| T |
24454060 |
gcagtgcctatcatgctga--gctctcagcagtaatgaaggccactgagatt |
24454011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 323 - 504
Target Start/End: Original strand, 28716525 - 28716706
Alignment:
| Q |
323 |
aagaaatttgatgtcatcattcaccctcctaagcctgttagcatcaaggaagttatttggtctcctccctactcagaatggattaagtgtaacactgatg |
422 |
Q |
| |
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||||| ||| ||||||| || ||| ||||||||||||||||||| ||||| ||||||||||| || |||||||||| |||||| || || |||||||| | |
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| T |
28716525 |
aagaagtttaatgtcattatccactctcctaagcctgttagcattaaggaggttatttggtccccaccctactcaggatggatcaaatgcaacactgacg |
28716624 |
T |
|
| Q |
423 |
gagcagctaattcaagtacctcagcttgtggaggaatttttagggattgcaatgcaaatctgctttcttgttttgctgaaaa |
504 |
Q |
| |
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| ||||| || ||| || || ||||||| |||||||| ||||| | ||||| ||| | |||||||| ||||| ||||| |
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|
| T |
28716625 |
gtgcagccaacacaaccacgtcttcttgtggtggaattttcagggactctaatgccaatattctttcttgctttgcagaaaa |
28716706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 222
Target Start/End: Original strand, 28716210 - 28716407
Alignment:
| Q |
26 |
ttctttaaatgtaagtttgttttcatgatttggtgctggtttgcttccattcttgattctacactgcattttcaatcaatt-aggaaatttggaccattt |
124 |
Q |
| |
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|||||| ||||||||||| ||||||||| ||||| ||||||||||| |||||||| | | || ||||| || || ||| |||| || ||||| |||| |
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| T |
28716210 |
ttctttgaatgtaagttttctttcatgatatggtgttggtttgcttctattcttgacacatctcttcatttccagtctattgaggatatctggactattt |
28716309 |
T |
|
| Q |
125 |
atgatagaggctggtcacctcagtgcaaaactgtgatacaggccaccattgttaacatctttagcacagtttggtactcaaggaaccaatgcagattt |
222 |
Q |
| |
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|||| | ||||| || ||||| |||| ||||| || ||||| |||||||| ||||| || ||| |||||||||||||||| ||||| |||||| |
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|
| T |
28716310 |
gtgatcgtcagtggtctccacagtgtaaaatagtgattcaagccactattgttaatatcttcagtacaatttggtactcaaggaatcaatgtagattt |
28716407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 323 - 504
Target Start/End: Original strand, 16490157 - 16490338
Alignment:
| Q |
323 |
aagaaatttgatgtcatcattcaccctcctaagcctgttagcatcaaggaagttatttggtctcctccctactcagaatggattaagtgtaacactgatg |
422 |
Q |
| |
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||||| ||| ||||||| || ||| ||||||||||||||||||| ||||||||||||||||| || || ||||||| |||||| || || |||||||| | |
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| T |
16490157 |
aagaagtttaatgtcattatccactctcctaagcctgttagcattaaggaagttatttggtccccaccatactcaggatggatcaaatgcaacactgacg |
16490256 |
T |
|
| Q |
423 |
gagcagctaattcaagtacctcagcttgtggaggaatttttagggattgcaatgcaaatctgctttcttgttttgctgaaaa |
504 |
Q |
| |
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| ||||| || ||| || || ||||||| |||||||| ||||| | ||||| ||| | |||||||| ||||| ||||| |
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| T |
16490257 |
gtgcagccaacacaaccacgtcttcttgtggtggaattttcagggactcaaatgccaatattctttcttgctttgcagaaaa |
16490338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 222
Target Start/End: Original strand, 16489842 - 16490039
Alignment:
| Q |
26 |
ttctttaaatgtaagtttgttttcatgatttggtgctggtttgcttccattcttgattctacactgcattttcaatcaatt-aggaaatttggaccattt |
124 |
Q |
| |
|
|||||| ||||||||||| ||||||||| ||||| ||||||||||| |||||||| | | || ||||| ||||| ||| |||| || ||||| |||| |
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| T |
16489842 |
ttctttgaatgtaagttttctttcatgatatggtgttggtttgcttctattcttgacacatctcttcatttccaatctattgaggatatctggactattt |
16489941 |
T |
|
| Q |
125 |
atgatagaggctggtcacctcagtgcaaaactgtgatacaggccaccattgttaacatctttagcacagtttggtactcaaggaaccaatgcagattt |
222 |
Q |
| |
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|||| | ||||| || ||||| |||| ||||| || ||||| |||||||| ||||| || ||| |||||||||||||||| ||||| |||||| |
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| T |
16489942 |
gtgatcgtcagtggtctccacagtgtaaaatagtgattcaagccactattgttaatatcttcagaacaatttggtactcaaggaatcaatgtagattt |
16490039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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