View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3788-2-Insertion-7 (Length: 873)

Name: NF3788-2-Insertion-7
Description: NF3788-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3788-2-Insertion-7
NF3788-2-Insertion-7
[»] chr8 (2 HSPs)
chr8 (70-873)||(42955298-42956095)
chr8 (8-43)||(42956093-42956128)


Alignment Details
Target: chr8 (Bit Score: 615; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 70 - 873
Target Start/End: Complemental strand, 42956095 - 42955298
Alignment:
Q  70 caggatcattaattgtgtttacaatttaccaagttagtttttgcttatgttttttataaaagctgttgcgataacatctttgttcatttcagttataact 169  Q
    |||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42956095 caggatcactaattgtgtttacaatttaccaagttagattttgcctatgttttttataaaagctgttgcgataacatctttgttcatttcagttataact 42955996  T
Q  170 caatatcggttatatatgtcacggtttgttgaaatcatgaaatcagatggtattttttagactgaaagagagaaaataaagtgagtgaatctttgagctg 269  Q
    | |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42955995 ctatatcggttatatatgtcacggcttgttgaaaacatgaaatcagatggtattttttagactgaatgagagaaaataaagtgagtgaatctttgagctg 42955896  T
Q  270 agaaattgttgtatctctgcattcttttgatcaaat-aaatagaaagtgaggaagcagaatgtattgccatgaacctagataaatcatgtgttttcaatc 368  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  42955895 agaaattgttgtatctctgcattcttttgatcaaataaaatagaaagtgaggaagcagaatgtattgctaagaacctagataaatcatgtgttttcaatc 42955796  T
Q  369 ttttcattcttaccgttttctcgtttatgttacttaatgttgcagcaataatccgactatgaattatcacatgtttaccaacatgtcatatgtcttactt 468  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  42955795 ttttcattcttcccgttttctcgtttacgttacttaatgttgcagcaataatccgacaatgaattatcacatgtttaccaacatgtcctatgtcttactt 42955696  T
Q  469 aagatattttttaaaaagttgagaatagttcttgtagaaataattact-tcacatttttt---cgtgttaatctccagttttgaatggaaatagtcgcta 564  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||    ||||||||||||||||||||||||||||||||||||    
T  42955695 aagatattttttaaaaagttgagaacagttcttgtagaaataattactattacattttttttgtgtgttaatctccagttttgaatggaaatagtcgcta 42955596  T
Q  565 gtaattcaaaattcgacagaggatgataaaatctgaacaagaattgaacttggaatttgaaattacaacttttgatgtaatttaatttaatggtgtagtt 664  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||              
T  42955595 gtaattcaaaattcgacagaggatgataaaatctgaacaagaattgaactcggaatttgaaattacaacttttgatgtaatttaatttaa---------- 42955506  T
Q  665 ttcctgatagtgctataataatttaagcacaggcatcagattcttgtcgtttttgaaagaactccataaattattatcgatcactacagtaata------ 758  Q
              ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||          
T  42955505 ----------tgctataataatttaagcacaggcatcagattcttgtcgtttttgtaagaactccataaattattatcgatcactacagtaataaagtac 42955416  T
Q  759 ---aagtacaaatgagagaatcacatagataattgtaaatagtttatttatttgactgcatacggactgcaagagagtatattacaccaaacataaagaa 855  Q
       |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42955415 tacaagtacaaatgagagaatcatatagataattgtaaatagtttatttatttgactgcatacggactgcaagagagtatattacaccaaacataaagaa 42955316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 42956128 - 42956093
Alignment:
Q  8 tttaggctatcactatcttaattcattgtgtttcag 43  Q
    ||||||||||||||||||||||||||||||||||||    
T  42956128 tttaggctatcactatcttaattcattgtgtttcag 42956093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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