View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3788-2-Insertion-8 (Length: 838)

Name: NF3788-2-Insertion-8
Description: NF3788-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3788-2-Insertion-8
NF3788-2-Insertion-8
[»] chr4 (6 HSPs)
chr4 (7-425)||(55119125-55119522)
chr4 (503-838)||(55118698-55119046)
chr4 (723-768)||(11932015-11932060)
chr4 (733-772)||(52792010-52792049)
chr4 (723-773)||(6948205-6948255)
chr4 (52-90)||(21236377-21236415)
[»] chr7 (9 HSPs)
chr7 (576-671)||(37580881-37580976)
chr7 (697-790)||(37557490-37557583)
chr7 (692-789)||(37564383-37564480)
chr7 (724-772)||(37580684-37580732)
chr7 (576-634)||(6778617-6778675)
chr7 (724-773)||(37525818-37525867)
chr7 (576-634)||(37476243-37476301)
chr7 (723-769)||(37540501-37540547)
chr7 (724-773)||(37535367-37535416)
[»] chr8 (3 HSPs)
chr8 (723-772)||(24406504-24406553)
chr8 (723-772)||(24412655-24412704)
chr8 (727-764)||(37363019-37363056)
[»] chr5 (4 HSPs)
chr5 (724-772)||(35390547-35390595)
chr5 (723-770)||(8981939-8981986)
chr5 (730-772)||(8991442-8991484)
chr5 (730-772)||(36686937-36686979)


Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 7 - 425
Target Start/End: Complemental strand, 55119522 - 55119125
Alignment:
Q  7 agtttcaccaaagatgaattatttggaggaacccaggattcgatttggatggaataattcttggtgagactatccttacctcacagccaaactccggatt 106  Q
    ||||||||||| ||||||||||| ||||||||||||| |||||||||||||| |||||| ||| | ||| ||||||||||||||||||||||||||||||    
T  55119522 agtttcaccaaggatgaattattcggaggaacccagggttcgatttggatggtataatttttgttcagattatccttacctcacagccaaactccggatt 55119423  T
Q  107 gttatgcacttttccgctaatatgggaggattaacaccaaaaagattgactctttgccaaataatcaaacttattggctattttaatcaattttataaac 206  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55119422 gttatgcccttttcccctaatatgggaggattaacaccaaaaagatcgactctttgccaaataatcaaacttattggctattttaatcaattttataaac 55119323  T
Q  207 tgagttgtgtgagccatcaattaaactttatatgtttttcaaagaaaaaactctataactcaaagatatcgttctatagcaatataataataacacgata 306  Q
    ||||||||||||||||||||||||||||||||                     |||||||||||||||||||||||||||||||||||| ||||||||||    
T  55119322 tgagttgtgtgagccatcaattaaactttata---------------------tataactcaaagatatcgttctatagcaatataatactaacacgata 55119244  T
Q  307 aataagaatagtttatgctaatcgtaaatttgataaagaaattcagtaatcttagagtagaaaattaagcaaaggtctaataaaccagaagagacacaca 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  55119243 aataagaatagtttatgctaatcgtaaatttgataaagaaattcagtaatcttagagtagaaaattaagtaaaggtctaacaaaccagaagagacacaca 55119144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 503 - 838
Target Start/End: Complemental strand, 55119046 - 55118698
Alignment:
Q  503 gaataagaaacaagaacaatgtgtctctcctacgagcgtccactatagccggacaagtaagatccagcaattccttgatgttcaagtaatttgcagctag 602  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  55119046 gaataagaaacacaaacaatgtgtctctcctacgagcttccactatagccggacaagtaagatccagcaattctttgatgttcaagtaaattgcagctag 55118947  T
Q  603 aaggagatcgttaagggtatcctgatcaacctgcttcatgaattcagtgtcccaagccttgagatcatcgacatgcttcttaaccttacgatcaacctta 702  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  55118946 aaggagatcgttaagggtatcctgatcaacctgcttcatgaattcagcgtcccaagccttgagatcatcgacacgcttcttaaccttacgatcaacctta 55118847  T
Q  703 acgaattcagcttcccaacgagcctccacatg-------------cttcttacaatattcaataaccttcgccaagatcttgcccttaacgttcagaata 789  Q
    ||||||||||||||||||||||||||||||||             ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  55118846 acgaattcagcttcccaacgagcctccacatgcttcctccacatgcttcttacagtattcaataaccttcgtcaagatcttgcccttaacgttcagaata 55118747  T
Q  790 acgatttcattgtcgctgccactattcttcttgatcatgtgcttgattg 838  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  55118746 acgatttcattgtcgctgccactattcttcttgatcatgtgcttgattg 55118698  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 723 - 768
Target Start/End: Original strand, 11932015 - 11932060
Alignment:
Q  723 agcctccacatgcttcttacaatattcaataaccttcgccaagatc 768  Q
    |||||| ||||||||||| ||||| |||||||||||||||||||||    
T  11932015 agcctcaacatgcttcttgcaatactcaataaccttcgccaagatc 11932060  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 733 - 772
Target Start/End: Original strand, 52792010 - 52792049
Alignment:
Q  733 tgcttcttacaatattcaataaccttcgccaagatcttgc 772  Q
    |||||||||||||| ||||||||||||| |||||||||||    
T  52792010 tgcttcttacaatactcaataaccttcgtcaagatcttgc 52792049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 723 - 773
Target Start/End: Original strand, 6948205 - 6948255
Alignment:
Q  723 agcctccacatgcttcttacaatattcaataaccttcgccaagatcttgcc 773  Q
    |||||| ||||||||||| ||||| ||||||||||| ||||||| ||||||    
T  6948205 agcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgcc 6948255  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 21236415 - 21236377
Alignment:
Q  52 tggatggaataattcttggtgagactatccttacctcac 90  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  21236415 tggatggaataattcttggtcagactatacttacctcac 21236377  T

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Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 576 - 671
Target Start/End: Complemental strand, 37580976 - 37580881
Alignment:
Q  576 cttgatgttcaagtaatttgcagctagaaggagatcgttaagggtatcctgatcaacctgcttcatgaattcagtgtcccaagccttgagatcatc 671  Q
    ||||||||||||||||||||||||| ||| ||| |||  |||  || |||||||||| |||||||||||||||| |||||||||||| ||||||||    
T  37580976 cttgatgttcaagtaatttgcagcttgaatgagttcgaaaagcatagcctgatcaacatgcttcatgaattcagcgtcccaagccttaagatcatc 37580881  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 697 - 790
Target Start/End: Complemental strand, 37557583 - 37557490
Alignment:
Q  697 accttaacgaattcagcttcccaacgagcctccacatgcttcttacaatattcaataaccttcgccaagatcttgcccttaacgttcagaataa 790  Q
    ||||||||||||||||  ||| ||  |||||| |||||| ||||||| |||||||| ||| ||||||| ||||||| ||| |||||||||||||    
T  37557583 accttaacgaattcagaatccaaatcagcctcgacatgcatcttacagtattcaatcaccatcgccaatatcttgctcttcacgttcagaataa 37557490  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 692 - 789
Target Start/End: Complemental strand, 37564480 - 37564383
Alignment:
Q  692 gatcaaccttaacgaattcagcttcccaacgagcctccacatgcttcttacaatattcaataaccttcgccaagatcttgcccttaacgttcagaata 789  Q
    ||||||| |||||||||||||| ||| |||  ||||| |||||| ||||||| |||||| | ||||| ||||| ||||||| ||| ||||| ||||||    
T  37564480 gatcaacattaacgaattcagcatccaaactggcctcgacatgcatcttacagtattcagtcacctttgccaatatcttgctcttcacgttaagaata 37564383  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 724 - 772
Target Start/End: Complemental strand, 37580732 - 37580684
Alignment:
Q  724 gcctccacatgcttcttacaatattcaataaccttcgccaagatcttgc 772  Q
    |||||||||||||||||||| |||||||||||||| |||| ||||||||    
T  37580732 gcctccacatgcttcttacagtattcaataacctttgccaggatcttgc 37580684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 576 - 634
Target Start/End: Complemental strand, 6778675 - 6778617
Alignment:
Q  576 cttgatgttcaagtaatttgcagctagaaggagatcgttaagggtatcctgatcaacct 634  Q
    |||||| ||||||||||||||||| |||| |||||||  ||| ||||||||||||||||    
T  6778675 cttgatattcaagtaatttgcagcaagaatgagatcgaaaagtgtatcctgatcaacct 6778617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 724 - 773
Target Start/End: Original strand, 37525818 - 37525867
Alignment:
Q  724 gcctccacatgcttcttacaatattcaataaccttcgccaagatcttgcc 773  Q
    ||||| |||||||||||||| |||||||| ||||||||||| ||||||||    
T  37525818 gcctcgacatgcttcttacagtattcaatcaccttcgccaatatcttgcc 37525867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 576 - 634
Target Start/End: Original strand, 37476243 - 37476301
Alignment:
Q  576 cttgatgttcaagtaatttgcagctagaaggagatcgttaagggtatcctgatcaacct 634  Q
    |||||| ||||||||||||||||| |||| |||||||  |||  |||||||||||||||    
T  37476243 cttgatattcaagtaatttgcagcaagaatgagatcgaaaagtttatcctgatcaacct 37476301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 723 - 769
Target Start/End: Complemental strand, 37540547 - 37540501
Alignment:
Q  723 agcctccacatgcttcttacaatattcaataaccttcgccaagatct 769  Q
    |||||| |||||||||||||| |||||||| ||||||||||| ||||    
T  37540547 agcctcgacatgcttcttacattattcaatcaccttcgccaatatct 37540501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 724 - 773
Target Start/End: Complemental strand, 37535416 - 37535367
Alignment:
Q  724 gcctccacatgcttcttacaatattcaataaccttcgccaagatcttgcc 773  Q
    ||||| |||||||||||||| |||||||| ||||| ||||| ||||||||    
T  37535416 gcctcgacatgcttcttacagtattcaatcacctttgccaatatcttgcc 37535367  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 723 - 772
Target Start/End: Original strand, 24406504 - 24406553
Alignment:
Q  723 agcctccacatgcttcttacaatattcaataaccttcgccaagatcttgc 772  Q
    |||||| ||||||||||||||||| || |||||||| |||||||||||||    
T  24406504 agcctcaacatgcttcttacaatactcgataacctttgccaagatcttgc 24406553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 723 - 772
Target Start/End: Complemental strand, 24412704 - 24412655
Alignment:
Q  723 agcctccacatgcttcttacaatattcaataaccttcgccaagatcttgc 772  Q
    |||||| ||||||||||||||||| || |||||||| | |||||||||||    
T  24412704 agcctcaacatgcttcttacaatactcgataacctttgtcaagatcttgc 24412655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 727 - 764
Target Start/End: Original strand, 37363019 - 37363056
Alignment:
Q  727 tccacatgcttcttacaatattcaataaccttcgccaa 764  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  37363019 tccacatgcttcttacagtattcaatcaccttcgccaa 37363056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 724 - 772
Target Start/End: Original strand, 35390547 - 35390595
Alignment:
Q  724 gcctccacatgcttcttacaatattcaataaccttcgccaagatcttgc 772  Q
    ||||| |||||||| |||||||| |||||||||||||||||||| ||||    
T  35390547 gcctcaacatgctttttacaatactcaataaccttcgccaagatgttgc 35390595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 723 - 770
Target Start/End: Complemental strand, 8981986 - 8981939
Alignment:
Q  723 agcctccacatgcttcttacaatattcaataaccttcgccaagatctt 770  Q
    |||||| ||||||||||| ||||| ||||| |||||||||||||||||    
T  8981986 agcctcaacatgcttcttgcaatactcaatcaccttcgccaagatctt 8981939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 730 - 772
Target Start/End: Complemental strand, 8991484 - 8991442
Alignment:
Q  730 acatgcttcttacaatattcaataaccttcgccaagatcttgc 772  Q
    ||||||||||| ||||| ||||| |||||||||||||||||||    
T  8991484 acatgcttcttgcaatactcaatcaccttcgccaagatcttgc 8991442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 730 - 772
Target Start/End: Original strand, 36686937 - 36686979
Alignment:
Q  730 acatgcttcttacaatattcaataaccttcgccaagatcttgc 772  Q
    |||||||| |||||||||||||||||||| |||||||| ||||    
T  36686937 acatgctttttacaatattcaataacctttgccaagatgttgc 36686979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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