View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3788-2-Insertion-9 (Length: 767)
Name: NF3788-2-Insertion-9
Description: NF3788-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3788-2-Insertion-9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 8 - 767
Target Start/End: Complemental strand, 50408943 - 50408143
Alignment:
| Q |
8 |
gagtgaacattgcctaggtaaacaaagatatttttaataaaatnnnnnnnnnctatgcatataatttactcggtttagtatacttggcttactat----- |
102 |
Q |
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| T |
50408943 |
gagtgaacattgcctaggtaaacaaagaaatttttaataaaataaaaaaa--ctatgcatataatttactcggtttagtatacttgggttactattttat |
50408846 |
T |
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| Q |
103 |
------cacatgtactgcttaaaagtaatataataaaatagcatagaatcttattttgctctcttttcaattgttaaaagtttatagctctctttttagt |
196 |
Q |
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| T |
50408845 |
agtagtcacatgtactgcttaaaagtaatataataaaatagcatagaatcttattttgctctcttttcaattattaaaagtttatagctctctttttagt |
50408746 |
T |
|
| Q |
197 |
atctcccactgaattggattcatca------ttgtgattttttattctttttacaagtaatcatcattgttaatttactttaaacaagtaactaacaatt |
290 |
Q |
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| T |
50408745 |
atctcccactgaattggattcatgaatatgattgtgattttttattctttttacaagtaatcatcattgttaatttactttaaacaagtaactaacaatt |
50408646 |
T |
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| Q |
291 |
tgctatatggtgccaaaccaagcacgtagctgagacagcaaaatgttgcacgcaagaaaatgccaaagttgaatacacaaaattcattcatgtatagcca |
390 |
Q |
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| T |
50408645 |
tgctatatggtgccaaaccaagcacgtagctgagacagcaaaatgttggacacaagaaaatgccaaagttgaatacacaaaattcattcatgtatagcca |
50408546 |
T |
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| Q |
391 |
aaattagatattataattgattccctatatttatcacatgattacagtgaaagatgggtattgaaaaagaaagcggtcctatactatagacacaaaaatg |
490 |
Q |
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| T |
50408545 |
aaattagatattataattgattccctatatttatcacatgagtacagtgaaagatgggtattgaaaaagaaagcggtcctatactatagacacaaaaatg |
50408446 |
T |
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| Q |
491 |
gattgaa-ttgtttttcggttcctagtcattgtcgtcctagtggtagtgaaatttgcttataaatcaacattgaaacaccaat----------caacatt |
579 |
Q |
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| T |
50408445 |
gattgaatttttttttcggttcctagtcattgtcgtcctagtggtagtgaaatttgcttataaatcaacattcaaacaccaatcaacattcaacaacatt |
50408346 |
T |
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| Q |
580 |
caacattcaacccctatacatcaatg----aatcacatcactgt------------ttcctttcctctcttgccgtcattttggaccaccgtcatctcag |
663 |
Q |
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| T |
50408345 |
caacattcaacccctatacatcaatgaatcaatcacatcactgtagcttttgcttcttcctttcctctcttgccgtcattttggaccaccgtcatctcag |
50408246 |
T |
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| Q |
664 |
ccgtagctccttcaacttcaacctgctctgatcggtacctcttgtatatatcaccttttataaaacttaattgttctggccactaaaataagtgaaataa |
763 |
Q |
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| T |
50408245 |
ccgtagctccttcaacttcaacctgctctgatcggtacctcttgtatatatcacc-tttataaaacttatttgttctggccactaaaataagtgaaataa |
50408147 |
T |
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| Q |
764 |
tggc |
767 |
Q |
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|||| |
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| T |
50408146 |
tggc |
50408143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 4e-31; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 638 - 731
Target Start/End: Original strand, 41637755 - 41637847
Alignment:
| Q |
638 |
gtcattttggaccaccgtcatctcagccgtagctccttcaacttcaacctgctctgatcggtacctcttgtatatatcaccttttataaaactt |
731 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
41637755 |
gtcattttggaccaccgtcatctcatccgaagctccttcaacttctacctgctctgatcggtacctcttgtatatatca-cgtttataaaactt |
41637847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 664 - 717
Target Start/End: Complemental strand, 41638695 - 41638642
Alignment:
| Q |
664 |
ccgtagctccttcaacttcaacctgctctgatcggtacctcttgtatatatcac |
717 |
Q |
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| T |
41638695 |
ccgtagctccttcaacttctacctgctctgaccggtacctcttgtatatatcac |
41638642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 720 - 767
Target Start/End: Original strand, 41637867 - 41637914
Alignment:
| Q |
720 |
tttataaaacttaattgttctggccactaaaataagtgaaataatggc |
767 |
Q |
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| T |
41637867 |
tttataaaacttaattgttctagccactaaaataagtgaaataatggc |
41637914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 692 - 765
Target Start/End: Original strand, 39628061 - 39628133
Alignment:
| Q |
692 |
tgatcggtacctcttgtatatatcaccttttataaaacttaattgttctggccactaaaataagtgaaataatg |
765 |
Q |
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| T |
39628061 |
tgatcggtacctcttgtatatatca-cgtttataaaacttaattgttctagtcaacaaaattactgaaataatg |
39628133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 736 - 767
Target Start/End: Complemental strand, 41638221 - 41638190
Alignment:
| Q |
736 |
gttctggccactaaaataagtgaaataatggc |
767 |
Q |
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| T |
41638221 |
gttctggccactaaaataagtgaaataatggc |
41638190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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