View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3788-Insertion-12 (Length: 463)

Name: NF3788-Insertion-12
Description: NF3788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3788-Insertion-12
NF3788-Insertion-12
[»] chr1 (5 HSPs)
chr1 (156-388)||(19073843-19074077)
chr1 (156-388)||(19121733-19121967)
chr1 (416-454)||(51796080-51796118)
chr1 (414-459)||(19073707-19073752)
chr1 (414-459)||(19121597-19121642)
[»] scaffold0006 (1 HSPs)
scaffold0006 (114-388)||(127851-128113)
[»] chr7 (1 HSPs)
chr7 (114-335)||(21517075-21517284)
[»] chr6 (3 HSPs)
chr6 (156-321)||(21795842-21796009)
chr6 (321-388)||(21800468-21800535)
chr6 (414-463)||(21800626-21800675)


Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 156 - 388
Target Start/End: Complemental strand, 19074077 - 19073843
Alignment:
Q  156 gtgcctttattctccactgtctgtatatcata--ccctccattccctcttcacaactagacaaaattgtccactgcwtctctaactagtaattaaactaa 253  Q
    ||||||||||||  |||  ||| |||||||||  |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  19074077 gtgcctttattcctcaccatctatatatcatatgcccttcattccctcttcacaactagacaaaattgtccactgcatctctaactagtaattaagctaa 19073978  T
Q  254 gatttcaaaacacatgagttaaagtcgaactaagtcgatattcgtcggccttaaactgcaattgttattgtcataataaaactacatgcgaatcaattag 353  Q
    |||||||||||||| ||||| |||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  19073977 gatttcaaaacacaagagttgaagtcgaattaagtcgatattcttcggccttaagctgcaattgttattgtcataataaaactacatgtgaatcaattag 19073878  T
Q  354 aattaagaagcttatcaatcagatgataacacaat 388  Q
    |||||||||||||||||||||||||||||||||||    
T  19073877 aattaagaagcttatcaatcagatgataacacaat 19073843  T

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Target: chr1; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 156 - 388
Target Start/End: Complemental strand, 19121967 - 19121733
Alignment:
Q  156 gtgcctttattctccactgtctgtatatcata--ccctccattccctcttcacaactagacaaaattgtccactgcwtctctaactagtaattaaactaa 253  Q
    ||||||||||||  |||  ||| |||||||||  |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  19121967 gtgcctttattcctcaccatctatatatcatatgcccttcattccctcttcacaactagacaaaattgtccactgcatctctaactagtaattaagctaa 19121868  T
Q  254 gatttcaaaacacatgagttaaagtcgaactaagtcgatattcgtcggccttaaactgcaattgttattgtcataataaaactacatgcgaatcaattag 353  Q
    |||||||||||||| ||||| |||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  19121867 gatttcaaaacacaagagttgaagtcgaattaagtcgatattcttcggccttaagctgcaattgttattgtcataataaaactacatgtgaatcaattag 19121768  T
Q  354 aattaagaagcttatcaatcagatgataacacaat 388  Q
    |||||||||||||||||||||||||||||||||||    
T  19121767 aattaagaagcttatcaatcagatgataacacaat 19121733  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 416 - 454
Target Start/End: Original strand, 51796080 - 51796118
Alignment:
Q  416 taattggagcttcgtgagaattaaggggatgagataggg 454  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  51796080 taattggagcttcgtgagaattaaagggatgagataggg 51796118  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 414 - 459
Target Start/End: Complemental strand, 19073752 - 19073707
Alignment:
Q  414 aataattggagcttcgtgagaattaaggggatgagatagggttggg 459  Q
    ||||||| |||||||||||||||||||||| | |||||||||||||    
T  19073752 aataatttgagcttcgtgagaattaagggggtaagatagggttggg 19073707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 414 - 459
Target Start/End: Complemental strand, 19121642 - 19121597
Alignment:
Q  414 aataattggagcttcgtgagaattaaggggatgagatagggttggg 459  Q
    ||||||| |||||||||||||||||||||| | |||||||||||||    
T  19121642 aataatttgagcttcgtgagaattaagggggtaagatagggttggg 19121597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 114 - 388
Target Start/End: Original strand, 127851 - 128113
Alignment:
Q  114 aaccagtgtaattgtttcgttaaaaatcgaatgttgatgattgtgcctttattctccactgtctgtatatcataccctccattccctcttcacaactaga 213  Q
    ||||||||||| | ||| |||||||||||| |||||||||||||||||||||||  |||| ||            ||| |||| ||||||||||||||||    
T  127851 aaccagtgtaactattttgttaaaaatcgagtgttgatgattgtgcctttattcctcactatc------------ccttcatttcctcttcacaactaga 127938  T
Q  214 caaaattgtccactgcwtctctaactagtaattaaactaagatttcaaaacacatgagttaaagtcgaactaagtcgatattcgtcggccttaaactgca 313  Q
    |||||||||||||||| |||||||||||||||||| ||| |||||||||||||| ||||| |||||||| ||||| ||||||| |||||||||| |||||    
T  127939 caaaattgtccactgcatctctaactagtaattaagctatgatttcaaaacacaagagttgaagtcgaattaagttgatattcttcggccttaagctgca 128038  T
Q  314 attgttattgtcataataaaactacatgcgaatcaattagaattaagaagcttatcaatcagatgataacacaat 388  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  128039 attgttattgtcataataaaactacaagtgaatcaattagaattaagaagcttatcaatcagatgataacacaat 128113  T

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Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 114 - 335
Target Start/End: Original strand, 21517075 - 21517284
Alignment:
Q  114 aaccagtgtaattgtttcgttaaaaatcgaatgttgatgattgtgcctttattctccactgtctgtatatcataccctccattccctcttcacaactaga 213  Q
    |||||| |||||||||| |||||||| ||| |||||||||||||||||||||||               |||| |||| |||||||||||||||||||||    
T  21517075 aaccagagtaattgttttgttaaaaaccgagtgttgatgattgtgcctttattcc--------------tcatgcccttcattccctcttcacaactaga 21517160  T
Q  214 caaaattgtccactgcwtctctaactagtaattaaactaagatttcaaaacacatgagttaaagtcgaactaagtc--gatattcgtcggccttaaactg 311  Q
    |||||||||||||||| |||||||||| |||||||  ||||||||||||||||| ||||| |||||||| ||||||   |||||| | |||||||| |||    
T  21517161 caaaattgtccactgcatctctaactactaattaagttaagatttcaaaacacaagagttgaagtcgaattaagtcaatatattctttggccttaagctg 21517260  T
Q  312 caattgttattgtcataataaaac 335  Q
    |||||||||||||||||| |||||    
T  21517261 caattgttattgtcataaaaaaac 21517284  T

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Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 156 - 321
Target Start/End: Original strand, 21795842 - 21796009
Alignment:
Q  156 gtgcctttattctccactgtctgtatatcata--ccctccattccctcttcacaactagacaaaattgtccactgcwtctctaactagtaattaaactaa 253  Q
    ||||||||||||  |||| ||| |||||||||  |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||     
T  21795842 gtgcctttattcctcactatctatatatcatatgcccttcattccctcttcacaactagacaaaattgtccactgcatctctaactagtaattaagttat 21795941  T
Q  254 gatttcaaaacacatgagttaaagtcgaactaagtcgatattcgtcggccttaaactgcaattgttat 321  Q
    |||||||||||||| ||||| |||| ||| ||||||||||||| ||  | |||| |||||||||||||    
T  21795942 gatttcaaaacacaagagttgaagtggaattaagtcgatattcttcaacgttaagctgcaattgttat 21796009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 321 - 388
Target Start/End: Original strand, 21800468 - 21800535
Alignment:
Q  321 ttgtcataataaaactacatgcgaatcaattagaattaagaagcttatcaatcagatgataacacaat 388  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  21800468 ttgtcataataaaactacatgtgaatcaactagaattaagaagcttatcaatcagatgataacacaat 21800535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 414 - 463
Target Start/End: Original strand, 21800626 - 21800675
Alignment:
Q  414 aataattggagcttcgtgagaattaaggggatgagatagggttgggctag 463  Q
    ||||||| |||||||||||||||||||||| | |||||||||||||||||    
T  21800626 aataatttgagcttcgtgagaattaagggggtaagatagggttgggctag 21800675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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