View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3788-Insertion-14 (Length: 507)
Name: NF3788-Insertion-14
Description: NF3788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3788-Insertion-14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 8 - 507
Target Start/End: Original strand, 49300070 - 49300571
Alignment:
| Q |
8 |
gtgttatacccccaaaaagtatgttgaatccttgacattaatttgtccacatcgaatccctaatattaaaaattatggagtaattagaaattaagtttac |
107 |
Q |
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| T |
49300070 |
gtgttatacccccaaaaagtatgttgaattcttgacattaatttgtccacatcgaatccctaatattgaaaattatggagtaattagcaattaagtttac |
49300169 |
T |
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| Q |
108 |
ggctgtattaggcatgcatgatggcgtgtgatctgattatacccactaatttcagcaagtaacattccataccttttaattttatgcatgaatttgtttg |
207 |
Q |
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| T |
49300170 |
ggctgtattaggcatgcatgatggcgtgtgatctgattatacccactaatttcagcaagtaacattccataccttttaattttatgcatgaatttgtttg |
49300269 |
T |
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| Q |
208 |
taggttatataactcttttgaccaggaggaattttaattccttacgtacgctttcatttgccacatgcacttcatgtataaaaaatatggttggaagata |
307 |
Q |
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| T |
49300270 |
taggttatacaactcttttgaccaggaggaattttaattccttacgtacgctttcatttgccacatgcacttcatgtataaaaaatatggttggaagata |
49300369 |
T |
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| Q |
308 |
taacaccatttatacatttgtcattcccttaaacaataatcttttagtaacaattttaataaggatttgatttatgtagaattgtttgtgtagagattaa |
407 |
Q |
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| T |
49300370 |
taacaccatttatacatttgtcattcccttaaacaataatcttttagtaacaattttaataaggatttgatttatgtagaattgtttgtgttgagattaa |
49300469 |
T |
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| Q |
408 |
cttaaaagtcgtataatctagtaatttgtgatcattggactgta--tgtgtgtgtgtatatatcaaagtttaacttgttgtatagcttaatgctatcata |
505 |
Q |
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| T |
49300470 |
cttaaaagtcgtataatctagtaatttgtgatcattggactgtatgtgtgtgtgtgtatatatcaaagtttaacttgttgtatagcttaatgctatcata |
49300569 |
T |
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| Q |
506 |
ag |
507 |
Q |
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| T |
49300570 |
ag |
49300571 |
T |
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