View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3788-Insertion-2 (Length: 770)

Name: NF3788-Insertion-2
Description: NF3788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3788-Insertion-2
NF3788-Insertion-2
[»] chr3 (9 HSPs)
chr3 (634-769)||(49819514-49819650)
chr3 (609-729)||(49819395-49819516)
chr3 (609-712)||(18345616-18345722)
chr3 (395-534)||(38941648-38941795)
chr3 (638-712)||(18345531-18345606)
chr3 (616-659)||(26066947-26066990)
chr3 (616-659)||(42375178-42375221)
chr3 (616-659)||(42403892-42403935)
chr3 (607-653)||(52275641-52275687)
[»] chr6 (11 HSPs)
chr6 (145-265)||(16791878-16791998)
chr6 (396-530)||(16784993-16785135)
chr6 (397-529)||(16655784-16655924)
chr6 (395-532)||(16778895-16779040)
chr6 (397-534)||(16794927-16795072)
chr6 (609-669)||(13035009-13035069)
chr6 (397-534)||(16870234-16870379)
chr6 (397-534)||(16985164-16985306)
chr6 (50-99)||(16792096-16792145)
chr6 (499-529)||(16841550-16841580)
chr6 (397-438)||(17067302-17067343)
[»] scaffold0133 (3 HSPs)
scaffold0133 (397-529)||(6222-6362)
scaffold0133 (401-529)||(10570-10706)
scaffold0133 (500-534)||(15862-15896)
[»] chr1 (9 HSPs)
chr1 (609-691)||(30212180-30212262)
chr1 (638-712)||(30212294-30212369)
chr1 (662-717)||(21662647-21662703)
chr1 (607-659)||(37381548-37381600)
chr1 (616-659)||(7733674-7733717)
chr1 (616-659)||(11166944-11166987)
chr1 (616-659)||(41767814-41767857)
chr1 (616-659)||(46388000-46388043)
chr1 (616-659)||(50985601-50985644)
[»] scaffold0256 (1 HSPs)
scaffold0256 (413-532)||(6878-7005)
[»] chr4 (2 HSPs)
chr4 (609-743)||(26405477-26405611)
chr4 (607-659)||(36040800-36040852)
[»] chr8 (3 HSPs)
chr8 (396-502)||(13375839-13375945)
chr8 (616-659)||(44843309-44843352)
chr8 (617-659)||(37741967-37742009)
[»] chr5 (2 HSPs)
chr5 (609-649)||(27135216-27135256)
chr5 (616-659)||(20407684-20407727)
[»] scaffold0144 (1 HSPs)
scaffold0144 (397-437)||(35434-35474)
[»] chr2 (2 HSPs)
chr2 (607-659)||(13098271-13098323)
chr2 (616-659)||(29609142-29609185)
[»] chr7 (2 HSPs)
chr7 (616-659)||(29054676-29054719)
chr7 (616-645)||(293056-293085)


Alignment Details
Target: chr3 (Bit Score: 101; Significance: 1e-49; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 634 - 769
Target Start/End: Original strand, 49819514 - 49819650
Alignment:
Q  634 atgttgtggaaaacctattaatgcccttatccctttttaatgcaaacgtctcaaatttg-gggtgaatctgttcttttttcttacattcctaatatgatg 732  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || |||||| |||||||||||||||||||||    
T  49819514 atgttgtggaaaatctattaatgcccttatccctttttaatgcaaacgtctcaaatttgagggtaaatttggtcttttatcttacattcctaatatgatg 49819613  T
Q  733 acatcacttaactcaaagtatacttttggttcaacta 769  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  49819614 acatcacttaactgaaagtacacttttggttcaacta 49819650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 609 - 729
Target Start/End: Original strand, 49819395 - 49819516
Alignment:
Q  609 atctcctttaatataagaaaagaacatgttgtggaaaacctattaatgcccttatccctttttaatgcaaacgtctcaaattt-ggggtgaatctgttct 707  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||| |||||| |||    
T  49819395 atctcctttaatataagaaaagaacatattgtggaaaacctattaatgcctttaaccctttttaatgcaaacgtctcaaatttgggggtaaatctggtct 49819494  T
Q  708 tttttcttacattcctaatatg 729  Q
    ||||||||||||| ||||||||    
T  49819495 tttttcttacatttctaatatg 49819516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 609 - 712
Target Start/End: Complemental strand, 18345722 - 18345616
Alignment:
Q  609 atctcctttaatataagaaaagaacatgttgtggaaaacctattaatg--cccttatccctttttaatgcaaacgtctcaaa-tttggggtgaatctgtt 705  Q
    ||||||||||||||||||||| |||||||||||||||| ||||| |||  |||||||||||||||||||||||| ||||||| |||||||| || ||| |    
T  18345722 atctcctttaatataagaaaaaaacatgttgtggaaaatctatttatgcccccttatccctttttaatgcaaacatctcaaattttggggtaaagctggt 18345623  T
Q  706 ctttttt 712  Q
    |||||||    
T  18345622 ctttttt 18345616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 395 - 534
Target Start/End: Original strand, 38941648 - 38941795
Alignment:
Q  395 agtttccaaagttaagtgcactaccagtcaactttcagcaactctaaaactcgcaaacgttaagtattgctcgttgtcctatgtcggagaagagatgcaa 494  Q
    ||||||||||||||||| ||||||||| |||||||||||||||| |||||| |||||  ||   ||||| |  ||| ||||||| |||||||||||||||    
T  38941648 agtttccaaagttaagttcactaccagacaactttcagcaactccaaaacttgcaaagattgtatattgttgcttgccctatgttggagaagagatgcaa 38941747  T
Q  495 gaaag--------gaagattggcataagatagctcacattcctcaatt 534  Q
    || ||        |||||||||||||||||||||||||||||| ||||    
T  38941748 gagaggaaaaggtgaagattggcataagatagctcacattcctgaatt 38941795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 638 - 712
Target Start/End: Complemental strand, 18345606 - 18345531
Alignment:
Q  638 tgtggaaaacctattaatgcccttatccctttttaatgcaaacgtctcaaa-tttggggtgaatctgttctttttt 712  Q
    ||||||||| || || |||||||||||| |||||||||||||||||||||| |||||||| |||||| ||||||||    
T  18345606 tgtggaaaatctgtttatgcccttatccttttttaatgcaaacgtctcaaattttggggtaaatctgatctttttt 18345531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 659
Target Start/End: Complemental strand, 26066990 - 26066947
Alignment:
Q  616 ttaatataagaaaagaacatgttgtggaaaacctattaatgccc 659  Q
    |||||||||||| |||| |||||||||||| |||||||||||||    
T  26066990 ttaatataagaagagaagatgttgtggaaatcctattaatgccc 26066947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 659
Target Start/End: Complemental strand, 42375221 - 42375178
Alignment:
Q  616 ttaatataagaaaagaacatgttgtggaaaacctattaatgccc 659  Q
    |||||||||||| |||| |||||||||||| |||||||||||||    
T  42375221 ttaatataagaagagaagatgttgtggaaatcctattaatgccc 42375178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 659
Target Start/End: Complemental strand, 42403935 - 42403892
Alignment:
Q  616 ttaatataagaaaagaacatgttgtggaaaacctattaatgccc 659  Q
    |||||||||||| |||| |||||||||||| |||||||||||||    
T  42403935 ttaatataagaagagaagatgttgtggaaatcctattaatgccc 42403892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 607 - 653
Target Start/End: Original strand, 52275641 - 52275687
Alignment:
Q  607 aaatctcctttaatataagaaaagaacatgttgtggaaaacctatta 653  Q
    |||||||  |||||||||||| |||| ||||||||||||||||||||    
T  52275641 aaatctctcttaatataagaagagaagatgttgtggaaaacctatta 52275687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 145 - 265
Target Start/End: Complemental strand, 16791998 - 16791878
Alignment:
Q  145 tctcctctcaaatttcacaattggttctttttcgtctttcttaatttgattttgttcatatcagtttttcttaatttataattcagttgaattttttaca 244  Q
    |||| |||||||||||||| ||||||| | ||| ||||||||||| |||||||| |||||||||||||| || ||||| |||| ||||||||| |||| |    
T  16791998 tctcatctcaaatttcacatttggttcctattcttctttcttaatatgattttgctcatatcagttttttttcatttacaattgagttgaattatttata 16791899  T
Q  245 catttatatatgttatgtctg 265  Q
    |||||||||||||||||||||    
T  16791898 catttatatatgttatgtctg 16791878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 396 - 530
Target Start/End: Complemental strand, 16785135 - 16784993
Alignment:
Q  396 gtttccaaagttaagtgcactaccagtcaactttcagcaactctaaaactcgcaaacgttaagtattgctcgttgtcctatgtcggagaagagatgcaag 495  Q
    |||| ||||||||||| || |||||| |||||||||||||||| |||||| ||||| |||| |||||| |||||| ||||||| ||||||||||||||||    
T  16785135 gttttcaaagttaagttcagtaccagacaactttcagcaactccaaaacttgcaaatgttatgtattgatcgttgccctatgttggagaagagatgcaag 16785036  T
Q  496 aaag--------gaagattggcataagatagctcacattcctc 530  Q
    | ||        |||||||||||||||||||||||||||||||    
T  16785035 agaggaataggtgaagattggcataagatagctcacattcctc 16784993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 397 - 529
Target Start/End: Complemental strand, 16655924 - 16655784
Alignment:
Q  397 tttccaaagttaagtgcactaccagtcaactttcagcaactctaaaactcgcaaacgttaagtattgctcgttgtcctatgtcggagaagagatgcaaga 496  Q
    ||||||||||||||| ||||||||| |||||||||||||||| |||||| ||||| |||||| |||  | |||| |||| || |||||||||||||||||    
T  16655924 tttccaaagttaagttcactaccagacaactttcagcaactccaaaacttgcaaaagttaagaatttgtggttgccctaagttggagaagagatgcaaga 16655825  T
Q  497 aag--------gaagattggcataagatagctcacattcct 529  Q
     ||        ||||||||||||||||||||||||||||||    
T  16655824 gaggaataggtgaagattggcataagatagctcacattcct 16655784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 395 - 532
Target Start/End: Complemental strand, 16779040 - 16778895
Alignment:
Q  395 agtttccaaagttaagtgcactaccagtcaactttcagcaactctaaaactcgcaaacgttaagtattgctcgttgtcctatgtcggagaagagatgcaa 494  Q
    |||||||||| ||||   |||| |||| |||||||||||||||| |||||| ||||   |||||||||| ||||||||||| || |||||||||||||||    
T  16779040 agtttccaaatttaaaatcactgccagacaactttcagcaactccaaaacttgcaatatttaagtattggtcgttgtcctaagttggagaagagatgcaa 16778941  T
Q  495 gaaag--------gaagattggcataagatagctcacattcctcaa 532  Q
    || ||        |||||||||||||||||||||||||||||||||    
T  16778940 gagaggaaaaggtgaagattggcataagatagctcacattcctcaa 16778895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 397 - 534
Target Start/End: Complemental strand, 16795072 - 16794927
Alignment:
Q  397 tttccaaagttaagtgcactaccagtcaactttcagcaactctaaaactcgcaaacgttaagtattgctcgttgtcctatgtcggagaagagatgcaaga 496  Q
    ||||||||||||||| ||||||||| ||||||||||||||||  ||||| ||||  ||||||||||| |  ||| ||| ||| ||||| |||||||||||    
T  16795072 tttccaaagttaagttcactaccagacaactttcagcaactccgaaacttgcaagagttaagtattgattattgccctttgttggagatgagatgcaaga 16794973  T
Q  497 aag--------gaagattggcataagatagctcacattcctcaatt 534  Q
     ||        |||||||||||||||||||||||| ||||| ||||    
T  16794972 gaggaaaaggtgaagattggcataagatagctcacgttcctgaatt 16794927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 609 - 669
Target Start/End: Original strand, 13035009 - 13035069
Alignment:
Q  609 atctcctttaatataagaaaagaacatgttgtggaaaacctattaatgcccttatcccttt 669  Q
    ||||||||||||||||||||| |||||| |||||||||||| |||||||||| ||||||||    
T  13035009 atctcctttaatataagaaaaaaacatgctgtggaaaacctcttaatgccctaatcccttt 13035069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 397 - 534
Target Start/End: Original strand, 16870234 - 16870379
Alignment:
Q  397 tttccaaagttaagtgcactaccagtcaactttcagcaactctaaaactcgcaaacgttaagtattgctcgttgtcctatgtcggagaagagatgcaaga 496  Q
    |||||||| |||||| ||||||||| ||||||||||||||||  ||||| |     ||||||||||| |  ||| |||| || |||||||||||||||||    
T  16870234 tttccaaaattaagttcactaccagacaactttcagcaactcacaaacttgatggagttaagtattgttgattgccctaagttggagaagagatgcaaga 16870333  T
Q  497 aaggaa--------gattggcataagatagctcacattcctcaatt 534  Q
     |||||        ||||||||||||||||||||||||||| ||||    
T  16870334 gaggaataggtgaagattggcataagatagctcacattcctgaatt 16870379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 397 - 534
Target Start/End: Complemental strand, 16985306 - 16985164
Alignment:
Q  397 tttccaaagttaagtgcactaccagtcaactttcagcaactctaaaactcgcaaacgttaagtattgctcgttgtcctatgtcggagaagagatgcaaga 496  Q
    ||||||||||||||| ||||||||| || |||||||||||||  ||| | ||||| ||||| ||||  |  ||| ||||||| ||||||||||| |||||    
T  16985306 tttccaaagttaagttcactaccagacagctttcagcaactccgaaatttgcaaaagttaattattattgattgccctatgttggagaagagatacaaga 16985207  T
Q  497 aag-----gaagattggcataagatagctcacattcctcaatt 534  Q
     ||     |||||   |||||||||||||||||||||| ||||    
T  16985206 gaggttgtgaagaccagcataagatagctcacattcctgaatt 16985164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 16792145 - 16792096
Alignment:
Q  50 cattccacgagtttagataacaacttcaattttaagcaacatggaaatac 99  Q
    ||||||||||||||||||||||||||||| ||  |||||| |||||||||    
T  16792145 cattccacgagtttagataacaacttcaaattcgagcaacttggaaatac 16792096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 499 - 529
Target Start/End: Complemental strand, 16841580 - 16841550
Alignment:
Q  499 ggaagattggcataagatagctcacattcct 529  Q
    |||||||||||||||||||||||||||||||    
T  16841580 ggaagattggcataagatagctcacattcct 16841550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 397 - 438
Target Start/End: Complemental strand, 17067343 - 17067302
Alignment:
Q  397 tttccaaagttaagtgcactaccagtcaactttcagcaactc 438  Q
    ||||||||||||||| |||| |||| ||||||||||||||||    
T  17067343 tttccaaagttaagttcactgccagacaactttcagcaactc 17067302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 397 - 529
Target Start/End: Complemental strand, 6362 - 6222
Alignment:
Q  397 tttccaaagttaagtgcactaccagtcaactttcagcaactctaaaactcgcaaacgttaagtattgctcgttgtcctatgtcggagaagagatgcaaga 496  Q
    |||||| |||||||| ||||||||| |||||||||||||||| |||||| ||||||||||| |||| |  |||||||||| | |||||||||||||||||    
T  6362 tttccagagttaagttcactaccagacaactttcagcaactccaaaacttgcaaacgttaactatttcaggttgtcctatattggagaagagatgcaaga 6263  T
Q  497 aag--------gaagattggcataagatagctcacattcct 529  Q
     ||        ||||||||||||||||||||||||||||||    
T  6262 gaggaataggtgaagattggcataagatagctcacattcct 6222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 401 - 529
Target Start/End: Complemental strand, 10706 - 10570
Alignment:
Q  401 caaagttaagtgcactaccagtcaactttcagcaactctaaaactcgcaaacgttaagtattgctcgttgtcctatgtcggagaagagatgcaagaaag- 499  Q
    ||||||||||| |||| |||| |||||||||||||||| |||||| ||||| |||||| |||  | |||| |||| || ||||||||||||||||| ||     
T  10706 caaagttaagttcactgccagacaactttcagcaactccaaaacttgcaaaagttaagaatttgtggttgccctaagttggagaagagatgcaagagagg 10607  T
Q  500 -------gaagattggcataagatagctcacattcct 529  Q
           ||||||||||||||||||||||||||||||    
T  10606 tataggtgaagattggcataagatagctcacattcct 10570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 500 - 534
Target Start/End: Complemental strand, 15896 - 15862
Alignment:
Q  500 gaagattggcataagatagctcacattcctcaatt 534  Q
    |||||||||||||||||||||||||||||||||||    
T  15896 gaagattggcataagatagctcacattcctcaatt 15862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 6e-27; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 609 - 691
Target Start/End: Original strand, 30212180 - 30212262
Alignment:
Q  609 atctcctttaatataagaaaagaacatgttgtggaaaacctattaatgcccttatccctttttaatgcaaacgtctcaaattt 691  Q
    ||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||| |||||||||||||| ||||||||||    
T  30212180 atctcctttaatataagaaaaaaacatgttgtggaaaatctatttatgcccttatccttttttaatgcaaacctctcaaattt 30212262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 638 - 712
Target Start/End: Original strand, 30212294 - 30212369
Alignment:
Q  638 tgtggaaaacctattaatgcccttatccctttttaatgcaaacgtctcaaa-tttggggtgaatctgttctttttt 712  Q
    ||||||||| || || |||||||||||| |||||||||||||||||||||| |||||||| |||||| ||||||||    
T  30212294 tgtggaaaatctgtttatgcccttatccttttttaatgcaaacgtctcaaattttggggtaaatctggtctttttt 30212369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 662 - 717
Target Start/End: Complemental strand, 21662703 - 21662647
Alignment:
Q  662 atccctttttaatgcaaacgtctcaaa-tttggggtgaatctgttcttttttcttac 717  Q
    ||||||||||||||||||||||| ||| |||||||| |||||| ||||||| |||||    
T  21662703 atccctttttaatgcaaacgtctaaaattttggggtaaatctgatctttttgcttac 21662647  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 607 - 659
Target Start/End: Original strand, 37381548 - 37381600
Alignment:
Q  607 aaatctcctttaatataagaaaagaacatgttgtggaaaacctattaatgccc 659  Q
    |||||||  |||||||||||| |||| |||||||||||| |||||||||||||    
T  37381548 aaatctctattaatataagaagagaagatgttgtggaaatcctattaatgccc 37381600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 659
Target Start/End: Complemental strand, 7733717 - 7733674
Alignment:
Q  616 ttaatataagaaaagaacatgttgtggaaaacctattaatgccc 659  Q
    |||||||||||| |||| |||||||||||| |||||||||||||    
T  7733717 ttaatataagaagagaagatgttgtggaaatcctattaatgccc 7733674  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 659
Target Start/End: Complemental strand, 11166987 - 11166944
Alignment:
Q  616 ttaatataagaaaagaacatgttgtggaaaacctattaatgccc 659  Q
    |||||||||||| |||| |||||||||||| |||||||||||||    
T  11166987 ttaatataagaagagaagatgttgtggaaatcctattaatgccc 11166944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 659
Target Start/End: Original strand, 41767814 - 41767857
Alignment:
Q  616 ttaatataagaaaagaacatgttgtggaaaacctattaatgccc 659  Q
    |||||||||||| |||| |||||||||||| |||||||||||||    
T  41767814 ttaatataagaagagaaaatgttgtggaaatcctattaatgccc 41767857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 659
Target Start/End: Complemental strand, 46388043 - 46388000
Alignment:
Q  616 ttaatataagaaaagaacatgttgtggaaaacctattaatgccc 659  Q
    |||||||||||| |||| |||||||||||| |||||||||||||    
T  46388043 ttaatataagaagagaagatgttgtggaaatcctattaatgccc 46388000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 659
Target Start/End: Original strand, 50985601 - 50985644
Alignment:
Q  616 ttaatataagaaaagaacatgttgtggaaaacctattaatgccc 659  Q
    |||||||||||| |||| |||||||||||| |||||||||||||    
T  50985601 ttaatataagaagagaagatgttgtggaaatcctattaatgccc 50985644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 413 - 532
Target Start/End: Complemental strand, 7005 - 6878
Alignment:
Q  413 cactaccagtcaactttcagcaactctaaaactcgcaaacgttaagtattgctcgttgtcctatgtcggagaagagatgcaagaaag--------gaaga 504  Q
    ||||||||| |||||||||||||||| |||||| |||||  ||||| |||  | |||| ||||||| ||||||||||||||||| ||        |||||    
T  7005 cactaccagacaactttcagcaactccaaaacttgcaaagcttaaggatttgtggttgccctatgttggagaagagatgcaagagaggaataggtgaaga 6906  T
Q  505 ttggcataagatagctcacattcctcaa 532  Q
    ||||||||||||||||||||||||||||    
T  6905 ttggcataagatagctcacattcctcaa 6878  T

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Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 609 - 743
Target Start/End: Original strand, 26405477 - 26405611
Alignment:
Q  609 atctcctttaatataagaaaagaacatgttgtggaaaacctattaatgcccttatccctttttaatgcaaacgtctcaaattt-ggggtgaatctgttct 707  Q
    |||||||||||||||||||||||||||||||||||||||||    |||||||| |||| |||||||| |||  || ||||||| ||||| ||| || |||    
T  26405477 atctcctttaatataagaaaagaacatgttgtggaaaacctcaatatgcccttttccc-ttttaatgtaaaaatcccaaatttaggggtaaatatggtct 26405575  T
Q  708 tttttcttacattcctaatatgatgacatcacttaa 743  Q
     || | ||||||| |||||  |||||||||||||||    
T  26405576 attattttacatttctaattggatgacatcacttaa 26405611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 607 - 659
Target Start/End: Complemental strand, 36040852 - 36040800
Alignment:
Q  607 aaatctcctttaatataagaaaagaacatgttgtggaaaacctattaatgccc 659  Q
    |||||||  |||||||||||| |||| |||||||||||| |||||||||||||    
T  36040852 aaatctctcttaatataagaagagaagatgttgtggaaatcctattaatgccc 36040800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 396 - 502
Target Start/End: Complemental strand, 13375945 - 13375839
Alignment:
Q  396 gtttccaaagttaagtgcactaccagtcaactttcagcaactctaaaactcgcaaacgttaagtattgctcgttgtcctatgtcggagaagagatgcaag 495  Q
    |||||| ||||||||  ||||||||| || |||||||||||||  ||||| ||||| ||||||||||| | ||||  |||||| ||||||| ||||||||    
T  13375945 gtttccgaagttaaggtcactaccagacagctttcagcaactccgaaacttgcaaaggttaagtattgttagttgctctatgttggagaagcgatgcaag 13375846  T
Q  496 aaaggaa 502  Q
    | |||||    
T  13375845 agaggaa 13375839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 659
Target Start/End: Complemental strand, 44843352 - 44843309
Alignment:
Q  616 ttaatataagaaaagaacatgttgtggaaaacctattaatgccc 659  Q
    |||||||||||| |||| |||||||||||| |||||||||||||    
T  44843352 ttaatataagaagagaagatgttgtggaaatcctattaatgccc 44843309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 617 - 659
Target Start/End: Original strand, 37741967 - 37742009
Alignment:
Q  617 taatataagaaaagaacatgttgtggaaaacctattaatgccc 659  Q
    ||||||||||| |||| |||||||||||| |||||||||||||    
T  37741967 taatataagaagagaagatgttgtggaaatcctattaatgccc 37742009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 609 - 649
Target Start/End: Complemental strand, 27135256 - 27135216
Alignment:
Q  609 atctcctttaatataagaaaagaacatgttgtggaaaacct 649  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  27135256 atctcctttaatataagaaaagaacatgttgtggaaaacct 27135216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 659
Target Start/End: Complemental strand, 20407727 - 20407684
Alignment:
Q  616 ttaatataagaaaagaacatgttgtggaaaacctattaatgccc 659  Q
    |||||||||||| |||| |||||||||||| |||||||||||||    
T  20407727 ttaatataagaagagaagatgttgtggaaatcctattaatgccc 20407684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 397 - 437
Target Start/End: Complemental strand, 35474 - 35434
Alignment:
Q  397 tttccaaagttaagtgcactaccagtcaactttcagcaact 437  Q
    ||||||||||||||| ||||||||| |||||||||||||||    
T  35474 tttccaaagttaagttcactaccagacaactttcagcaact 35434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 607 - 659
Target Start/End: Original strand, 13098271 - 13098323
Alignment:
Q  607 aaatctcctttaatataagaaaagaacatgttgtggaaaacctattaatgccc 659  Q
    |||||||  |||||||||||| |||| |||||||||||| |||||||||||||    
T  13098271 aaatctctcttaatataagaagagaagatgttgtggaaatcctattaatgccc 13098323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 659
Target Start/End: Complemental strand, 29609185 - 29609142
Alignment:
Q  616 ttaatataagaaaagaacatgttgtggaaaacctattaatgccc 659  Q
    |||||||||||| |||| |||||||||||| |||||||||||||    
T  29609185 ttaatataagaagagaagatgttgtggaaatcctattaatgccc 29609142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 659
Target Start/End: Complemental strand, 29054719 - 29054676
Alignment:
Q  616 ttaatataagaaaagaacatgttgtggaaaacctattaatgccc 659  Q
    |||||||||||| |||| |||||||||||| |||||||||||||    
T  29054719 ttaatataagaagagaagatgttgtggaaatcctattaatgccc 29054676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 616 - 645
Target Start/End: Original strand, 293056 - 293085
Alignment:
Q  616 ttaatataagaaaagaacatgttgtggaaa 645  Q
    ||||||||||||||||||||||||||||||    
T  293056 ttaatataagaaaagaacatgttgtggaaa 293085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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