View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3788-Insertion-3 (Length: 695)

Name: NF3788-Insertion-3
Description: NF3788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3788-Insertion-3
NF3788-Insertion-3
[»] chr7 (7 HSPs)
chr7 (337-695)||(41866131-41866491)
chr7 (8-311)||(41865830-41866133)
chr7 (467-541)||(28261753-28261827)
chr7 (8-121)||(17207471-17207584)
chr7 (468-541)||(48918555-48918628)
chr7 (477-535)||(31656837-31656895)
chr7 (477-535)||(29218223-29218281)
[»] chr5 (4 HSPs)
chr5 (468-547)||(15369470-15369549)
chr5 (463-541)||(16946297-16946375)
chr5 (493-535)||(19732093-19732135)
chr5 (483-535)||(34693775-34693827)
[»] chr8 (9 HSPs)
chr8 (465-543)||(13117836-13117914)
chr8 (463-541)||(18668976-18669054)
chr8 (465-541)||(13135574-13135650)
chr8 (466-541)||(13009787-13009862)
chr8 (467-541)||(13011028-13011102)
chr8 (468-541)||(9577688-9577761)
chr8 (463-541)||(26442004-26442082)
chr8 (477-535)||(11537262-11537320)
chr8 (54-107)||(13701871-13701924)
[»] scaffold0971 (1 HSPs)
scaffold0971 (459-541)||(1326-1409)
[»] chr6 (1 HSPs)
chr6 (466-541)||(29022863-29022938)
[»] chr4 (8 HSPs)
chr4 (467-541)||(23458688-23458762)
chr4 (468-541)||(42636393-42636466)
chr4 (468-541)||(56191433-56191506)
chr4 (468-541)||(56435057-56435130)
chr4 (477-535)||(20916806-20916863)
chr4 (477-535)||(31032755-31032812)
chr4 (8-107)||(27011045-27011144)
chr4 (477-535)||(35534150-35534207)
[»] chr2 (5 HSPs)
chr2 (467-541)||(2388808-2388882)
chr2 (477-535)||(35514112-35514169)
chr2 (477-535)||(1211741-1211799)
chr2 (477-535)||(3449568-3449625)
chr2 (477-535)||(38377299-38377356)
[»] chr3 (4 HSPs)
chr3 (11-114)||(14484188-14484291)
chr3 (8-124)||(12527942-12528058)
chr3 (477-535)||(26379279-26379336)
chr3 (477-535)||(29383688-29383745)
[»] chr1 (4 HSPs)
chr1 (468-541)||(45764995-45765068)
chr1 (8-107)||(17177539-17177638)
chr1 (477-535)||(36904658-36904715)
chr1 (17-99)||(38490242-38490324)
[»] scaffold0899 (1 HSPs)
scaffold0899 (468-541)||(2453-2526)
[»] scaffold0013 (1 HSPs)
scaffold0013 (10-96)||(42807-42893)


Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 337 - 695
Target Start/End: Original strand, 41866131 - 41866491
Alignment:
Q  337 aagataatcaatggttttgtttttgaattaaaaggaataaattaaaatcaggctgtacaagacaagggcaaaaatgtcatttagtgaccaacccagattc 436  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  41866131 aagataatcaatggttttgtttttgaattaaaaggaataaattcaaatcaggctgtacaagacaagggcaaaaatgtcatatagtgaccaacccggattc 41866230  T
Q  437 ctcctattttcacaaaaggaataaacaaaaatggcttcgyccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacg 536  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41866231 ctcctattttcacaaaaggaataaacaaaaatggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacg 41866330  T
Q  537 aaaccctgttgatattatttctgaagattattttgttgttcaataattctgggagcacgtacctattttaatggaagttatgtacaaaggtatagtatat 636  Q
    |||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41866331 aaaccctgttgaaattatttcttaagattattttcttgttcaataattctgggagcacgtacctattttaatggaagttatgtacaaaggtatagtatat 41866430  T
Q  637 agtcagttat--acactacataatcacattccattccattcatgaaagacaaccaaagata 695  Q
    ||||||||||  |||||||||||||||||||||||||||| |||| |||||||||||||||    
T  41866431 agtcagttatacacactacataatcacattccattccattaatgagagacaaccaaagata 41866491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 41865830 - 41866133
Alignment:
Q  8 gcaccagagccaatactccatctagctcctccacggataatgaaacgggaacgcagaatgctccgccaaacataactcggattgtgaccgatgttagcat 107  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41865830 gcaccagagccaatactctatctagctcctccacggataatgaaacgggaacgcagaatgctccgccaaacataactcggattgtgaccgatgttagcat 41865929  T
Q  108 caagaaaagacttattcaaatggtatcactattaaatattattttttattcgctattagatttctatactagctccatcttattattacaaaacttatag 207  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41865930 caagaaaagacttattcaaatggtatcactactagatattattttttattcgctattagatttctatactagctccatcttattattacaaaacttatag 41866029  T
Q  208 aattatatcaataattaaaaatattggaatgaatttgactacaatttatagctgtggtgtaatctgcaaaatcaacaaggtttacttgtcttcagctcat 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41866030 aattatatcaataattaaaaatattggaatgaatttgactacaatttatagctgtggtgtaatctgtaaaatcaacaaggtttacttgtcttcagctcat 41866129  T
Q  308 taag 311  Q
    ||||    
T  41866130 taag 41866133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 467 - 541
Target Start/End: Original strand, 28261753 - 28261827
Alignment:
Q  467 atggcttcgyccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 541  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28261753 atggcttcgcccaggctagaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 28261827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 17207471 - 17207584
Alignment:
Q  8 gcaccagagccaatactccatctagctcctccacggataatgaaacgggaacgcagaatgctccgccaaacataactcggattgtgaccgatgttagcat 107  Q
    |||||||||||||| |||||||| ||||| ||| | | ||||||| ||||||| |||||||||||||||||||||||||||||| |||| ||| ||||||    
T  17207471 gcaccagagccaatgctccatcttgctccaccatgaacaatgaaaagggaacgtagaatgctccgccaaacataactcggattgcgaccaatgctagcat 17207570  T
Q  108 caagaaaagactta 121  Q
    ||||||| ||||||    
T  17207571 caagaaaggactta 17207584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 468 - 541
Target Start/End: Original strand, 48918555 - 48918628
Alignment:
Q  468 tggcttcgyccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 541  Q
    |||||||| || || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48918555 tggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 48918628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 477 - 535
Target Start/End: Original strand, 31656837 - 31656895
Alignment:
Q  477 ccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 535  Q
    ||||| |||||||||||||||| ||||||| ||||| ||||||||||||||||||||||    
T  31656837 ccaggttcgaactggggacctttagtgtgtgagactaacgtgataaccaactacaccac 31656895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 477 - 535
Target Start/End: Original strand, 29218223 - 29218281
Alignment:
Q  477 ccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 535  Q
    ||||| |||||||||||||||  ||||||| |||||  |||||||||||||||||||||    
T  29218223 ccaggttcgaactggggacctctagtgtgtgagactagcgtgataaccaactacaccac 29218281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 468 - 547
Target Start/End: Complemental strand, 15369549 - 15369470
Alignment:
Q  468 tggcttcgyccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccctgttg 547  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15369549 tggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccctgttg 15369470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 463 - 541
Target Start/End: Original strand, 16946297 - 16946375
Alignment:
Q  463 aaaaatggcttcgyccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 541  Q
    |||| |||||||| || | ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16946297 aaaattggcttcgcccggactcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 16946375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 493 - 535
Target Start/End: Original strand, 19732093 - 19732135
Alignment:
Q  493 gaccttcagtgtgttagactgacgtgataaccaactacaccac 535  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  19732093 gaccttcagtgtgttagactgacgtgataaccaactacaccac 19732135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 483 - 535
Target Start/End: Original strand, 34693775 - 34693827
Alignment:
Q  483 tcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 535  Q
    |||||| ||||||||  ||||||| |||||  |||||||||||||||||||||    
T  34693775 tcgaaccggggacctctagtgtgtgagactagcgtgataaccaactacaccac 34693827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 465 - 543
Target Start/End: Complemental strand, 13117914 - 13117836
Alignment:
Q  465 aaatggcttcgyccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccct 543  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13117914 aaatggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccct 13117836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 463 - 541
Target Start/End: Original strand, 18668976 - 18669054
Alignment:
Q  463 aaaaatggcttcgyccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 541  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18668976 aaaaatggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 18669054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 465 - 541
Target Start/End: Complemental strand, 13135650 - 13135574
Alignment:
Q  465 aaatggcttcgyccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 541  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13135650 aaatggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 13135574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 466 - 541
Target Start/End: Original strand, 13009787 - 13009862
Alignment:
Q  466 aatggcttcgyccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 541  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13009787 aatggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtaataaccaactacaccacgaaacc 13009862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 467 - 541
Target Start/End: Original strand, 13011028 - 13011102
Alignment:
Q  467 atggcttcgyccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 541  Q
    ||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13011028 atggcttcgcccaggtttgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 13011102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 468 - 541
Target Start/End: Complemental strand, 9577761 - 9577688
Alignment:
Q  468 tggcttcgyccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 541  Q
    |||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9577761 tggcttcgcccaggtttgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 9577688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 463 - 541
Target Start/End: Original strand, 26442004 - 26442082
Alignment:
Q  463 aaaaatggcttcgyccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 541  Q
    ||||||||||||| || || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26442004 aaaaatggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 26442082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 477 - 535
Target Start/End: Complemental strand, 11537320 - 11537262
Alignment:
Q  477 ccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 535  Q
    ||||| |||||||||||||||  ||||||| |||||  |||||||||| ||||||||||    
T  11537320 ccaggttcgaactggggacctctagtgtgtgagactagcgtgataaccgactacaccac 11537262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 13701871 - 13701924
Alignment:
Q  54 gggaacgcagaatgctccgccaaacataactcggattgtgaccgatgttagcat 107  Q
    ||||||| | |||| |||| ||||||||||||||||||||||| ||||| ||||    
T  13701871 gggaacgtaaaatgttccgtcaaacataactcggattgtgaccaatgttggcat 13701924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0971 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0971
Description:

Target: scaffold0971; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 459 - 541
Target Start/End: Original strand, 1326 - 1409
Alignment:
Q  459 aaacaaaa-atggcttcgyccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 541  Q
    |||||||| ||||||||| || || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1326 aaacaaaacatggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 1409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 466 - 541
Target Start/End: Complemental strand, 29022938 - 29022863
Alignment:
Q  466 aatggcttcgyccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 541  Q
    |||||||||| || || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29022938 aatggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 29022863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 467 - 541
Target Start/End: Original strand, 23458688 - 23458762
Alignment:
Q  467 atggcttcgyccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 541  Q
    ||||||||| || || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23458688 atggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 23458762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 468 - 541
Target Start/End: Complemental strand, 42636466 - 42636393
Alignment:
Q  468 tggcttcgyccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 541  Q
    |||||||| || || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42636466 tggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 42636393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 468 - 541
Target Start/End: Original strand, 56191433 - 56191506
Alignment:
Q  468 tggcttcgyccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 541  Q
    |||||||| || || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  56191433 tggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 56191506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 468 - 541
Target Start/End: Complemental strand, 56435130 - 56435057
Alignment:
Q  468 tggcttcgyccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 541  Q
    |||||||| || || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  56435130 tggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 56435057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 477 - 535
Target Start/End: Original strand, 20916806 - 20916863
Alignment:
Q  477 ccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 535  Q
    ||||| ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||    
T  20916806 ccaggatcgaactggagaccttcagtgtgtaagactgacgtgataacc-actacaccac 20916863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 477 - 535
Target Start/End: Complemental strand, 31032812 - 31032755
Alignment:
Q  477 ccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 535  Q
    ||||| ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||    
T  31032812 ccaggatcgaactggagaccttcagtgtgtaagactgacgtgataacc-actacaccac 31032755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 27011045 - 27011144
Alignment:
Q  8 gcaccagagccaatactccatctagctcctccacggataatgaaacgggaacgcagaatgctccgccaaacataactcggattgtgaccgatgttagcat 107  Q
    |||||| | ||||| |||||||| ||||| ||||| | ||| || |||| ||| | ||| |||||||||||||| |||||||||||||| ||||| ||||    
T  27011045 gcaccaaaaccaatgctccatcttgctccaccacgcacaataaagcgggcacgtaaaatactccgccaaacatagctcggattgtgacctatgttggcat 27011144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 477 - 535
Target Start/End: Complemental strand, 35534207 - 35534150
Alignment:
Q  477 ccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 535  Q
    ||||| ||||||||| |||||| ||||||| ||||| ||||||||||| ||||||||||    
T  35534207 ccaggatcgaactggagacctttagtgtgtaagactaacgtgataacc-actacaccac 35534150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 467 - 541
Target Start/End: Complemental strand, 2388882 - 2388808
Alignment:
Q  467 atggcttcgyccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 541  Q
    ||||||||| || || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2388882 atggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 2388808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 477 - 535
Target Start/End: Complemental strand, 35514169 - 35514112
Alignment:
Q  477 ccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 535  Q
    ||||| ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||    
T  35514169 ccaggatcgaactggagaccttcagtgtgtaagactgacgtgataacc-actacaccac 35514112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 477 - 535
Target Start/End: Original strand, 1211741 - 1211799
Alignment:
Q  477 ccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 535  Q
    ||||| |||||||||||||||  ||||||| |||||  |||||||||| ||||||||||    
T  1211741 ccaggttcgaactggggacctctagtgtgtgagactagcgtgataaccgactacaccac 1211799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 477 - 535
Target Start/End: Original strand, 3449568 - 3449625
Alignment:
Q  477 ccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 535  Q
    ||||| ||||||||| |||||| ||||||| ||||| ||||||||||| ||||||||||    
T  3449568 ccaggatcgaactggagacctttagtgtgtaagactaacgtgataacc-actacaccac 3449625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 477 - 535
Target Start/End: Complemental strand, 38377356 - 38377299
Alignment:
Q  477 ccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 535  Q
    ||||| ||||||||| |||||| ||||||| ||||| ||||||||||| ||||||||||    
T  38377356 ccaggatcgaactggagacctttagtgtgtaagactaacgtgataacc-actacaccac 38377299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 14484291 - 14484188
Alignment:
Q  11 ccagagccaatactccatctagctcctccacggataatgaaacgggaacgcagaatgctccgccaaacataactcggattgtgaccgatgttagcatcaa 110  Q
    ||||||||||||||||| || ||||| || |||| ||||||||||||||| | ||| ||||||| ||||||||||||||||||||| ||| |||||| ||    
T  14484291 ccagagccaatactccaccttgctccgcctcggacaatgaaacgggaacgtaaaatactccgcccaacataactcggattgtgaccaatggtagcatgaa 14484192  T
Q  111 gaaa 114  Q
    ||||    
T  14484191 gaaa 14484188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 12527942 - 12528058
Alignment:
Q  8 gcaccagagccaatactccatctagctcctccacggataatgaaacgggaacgcagaatgctccgccaaacataactcggattgtgaccgatgttagcat 107  Q
    |||||||| || || |||||||| ||||| ||||| | ||| || |||||||| | |||||||| |||||||||||||||||||||||| ||||| ||||    
T  12527942 gcaccagaaccgatgctccatcttgctccaccacgcacaataaagcgggaacgtaaaatgctccaccaaacataactcggattgtgaccaatgttggcat 12528041  T
Q  108 caagaaaagacttattc 124  Q
      ||||| || ||||||    
T  12528042 tgagaaaggatttattc 12528058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 477 - 535
Target Start/End: Original strand, 26379279 - 26379336
Alignment:
Q  477 ccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 535  Q
    ||||| ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||    
T  26379279 ccaggatcgaactggagaccttcagtgtgtaagactgacgtgataacc-actacaccac 26379336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 477 - 535
Target Start/End: Complemental strand, 29383745 - 29383688
Alignment:
Q  477 ccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 535  Q
    ||||| ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||    
T  29383745 ccaggatcgaactggagaccttcagtgtgtaagactgacgtgataacc-actacaccac 29383688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 7e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 468 - 541
Target Start/End: Original strand, 45764995 - 45765068
Alignment:
Q  468 tggcttcgyccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 541  Q
    |||||||| || || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45764995 tggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 45765068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 17177638 - 17177539
Alignment:
Q  8 gcaccagagccaatactccatctagctcctccacggataatgaaacgggaacgcagaatgctccgccaaacataactcggattgtgaccgatgttagcat 107  Q
    |||||||||||||  |||||||| ||||| ||||| | ||| || |||| ||| | ||| |||||||||||||| |||||||||||||| ||||| ||||    
T  17177638 gcaccagagccaacgctccatcttgctccaccacgcacaataaagcgggcacgtaaaatactccgccaaacatagctcggattgtgaccaatgttggcat 17177539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 477 - 535
Target Start/End: Original strand, 36904658 - 36904715
Alignment:
Q  477 ccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccac 535  Q
    ||||| ||||||||| |||||| ||||||| ||||| ||||||||||| ||||||||||    
T  36904658 ccaggatcgaactggagacctttagtgtgtaagactaacgtgataacc-actacaccac 36904715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 38490242 - 38490324
Alignment:
Q  17 ccaatactccatctagctcctccacggataatgaaacgggaacgcagaatgctccgccaaacataactcggattgtgaccgat 99  Q
    ||||||||||| | ||| || ||||| | ||| || |||| ||||| |||||| ||||| || ||||||||||||||||||||    
T  38490242 ccaatactccaacgagccccaccacgcacaataaatcgggcacgcaaaatgctacgccacacgtaactcggattgtgaccgat 38490324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0899 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0899
Description:

Target: scaffold0899; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 468 - 541
Target Start/End: Complemental strand, 2526 - 2453
Alignment:
Q  468 tggcttcgyccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 541  Q
    |||||||| || || || |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2526 tggcttcgccctggttcaaactggagaccttcagtgtgttagactgacgtgataaccaactacaccactaaacc 2453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 42893 - 42807
Alignment:
Q  10 accagagccaatactccatctagctcctccacggataatgaaacgggaacgcagaatgctccgccaaacataactcggattgtgacc 96  Q
    |||||| ||||||||||||| ||| || ||||||| ||| ||||||| ||| |||||| | ||||| ||||||||||| || |||||    
T  42893 accagacccaatactccatcgagcgccaccacggacaataaaacgggcacgaagaatgttgcgccacacataactcgggttatgacc 42807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University