View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3788_high_1 (Length: 673)

Name: NF3788_high_1
Description: NF3788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3788_high_1
NF3788_high_1
[»] chr1 (1 HSPs)
chr1 (65-663)||(8354629-8355267)


Alignment Details
Target: chr1 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 65 - 663
Target Start/End: Complemental strand, 8355267 - 8354629
Alignment:
Q  65 tatcatgaacagaggaacaaagttgataatatttaggatatcaaattacccaacaggaacatagagggattcagacaatcttaattgttcgtcttgattc 164  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8355267 tatcatgaacagaggaacaaagttgatattatttaggatatcaaattacccaacaggaacatagagggattcagacaatcttaattgttcgtcttgattc 8355168  T
Q  165 taaatttaagttttaatttactttcaatttgtaaaccaacttggaatgcaaacccctgaaatttatatttgtatgacttataaaacatataaaatcatcc 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8355167 taaatttaagttttaatttactttcaatttgtaaaccaacttggaatgcaaacccctgaaatttatatttatatgacttataaaacatataaaatcatcc 8355068  T
Q  265 tttttgag------------------tactataagaaagggaccaaaaccgatagtttttaaaatgaatgaccaagtactccattattaaaggagcaatc 346  Q
    ||||||||                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8355067 tttttgagtttaaaaaaaaataaaaatactataagaaagggaccaaaaccgatagtttttaaaatgaatgaccaagtactccattattaaaggaccaatc 8354968  T
Q  347 cgagta--attca-----aggataggatagataagtaatcttattaaaatagatagactagggtgtatttttgaactgagtctcttacaacaacaaaaac 439  Q
    ||||||  |||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  8354967 cgagtaatattcaaggataggataggatagataagtaatcttattaaaatagatagactagggtgtatttttgaactgag--tcttacaacaacaaaaac 8354870  T
Q  440 aaaacagttatccatg------------atatatctatcattcccaaagcaaaaggtt-----ttaggttgcaggggaagcattagcaatgtcaatgaca 522  Q
    ||||||||||||||||            |||||| |||||||||||||||||| ||||     |||||||||||||||||||||||||||||||||||||    
T  8354869 aaaacagttatccatgatatatatatatatatatatatcattcccaaagcaaagggttttaggttaggttgcaggggaagcattagcaatgtcaatgaca 8354770  T
Q  523 aaacggtaacgaacatcattcttcacaagacgctgaaaagcttcattgattgtatcagctttgattaattcaatgtcacatgtgatattatgcttcccac 622  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8354769 aaacggtaacgaacatcattcttcaaaagacgctgaaaagcttcattgattgtatcagctttgattaattcaatgtcacatgtgatattatgcttcccac 8354670  T
Q  623 aaacatccaacatttcttgagtctcttttattcctcctatg 663  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8354669 aaacatccaacatttcttgagtctcttttattcctcctatg 8354629  T

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