View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3788_high_14 (Length: 357)

Name: NF3788_high_14
Description: NF3788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3788_high_14
NF3788_high_14
[»] chr2 (13 HSPs)
chr2 (14-343)||(11103956-11104285)
chr2 (151-340)||(11095634-11095823)
chr2 (157-342)||(11145245-11145430)
chr2 (157-322)||(11149179-11149344)
chr2 (152-322)||(11136941-11137111)
chr2 (157-324)||(11110094-11110261)
chr2 (233-337)||(11171246-11171350)
chr2 (158-343)||(11118099-11118284)
chr2 (157-322)||(11155562-11155727)
chr2 (159-270)||(11191956-11192067)
chr2 (290-322)||(11177309-11177341)
chr2 (240-322)||(10794028-10794110)
chr2 (164-260)||(11200121-11200217)
[»] chr4 (1 HSPs)
chr4 (95-132)||(51906708-51906745)


Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 14 - 343
Target Start/End: Original strand, 11103956 - 11104285
Alignment:
Q  14 agactctaagaacaattataatattcgtaaagactgaatttaaataaaaaactatcacggattaaaatcaaaatatactagaaatgtaaggaacaaaatc 113  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  11103956 agactctaagaacaattataatattcgtaaagactaaatttaaataaaaaactatcacgtattaaaataaaaatatactagaaatgtaaggaacaaaatc 11104055  T
Q  114 atatttaaccctaaaataaagtaaatgaaaagtcttttttgtgacagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaaca 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11104056 atatttaaccctaaaataaagtaaatgaaaagtcttttttgtgacagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaaca 11104155  T
Q  214 agatgcatttccaaacagaaactcattaagaggtttggatgttgtgaatcaaatcaagacagcagttgaagaagaatgtcctaacactgtttcttgtgct 313  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11104156 agatgcatttccaaacagaaactcattaaagcgtttggatgttgtgaataaaatcaagacagcagttgaagaagaatgtcctaacactgtttcttgtgct 11104255  T
Q  314 gatattcttactattgcagctgaagtatct 343  Q
    ||||||||||||||||||||||||||||||    
T  11104256 gatattcttactattgcagctgaagtatct 11104285  T

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Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 151 - 340
Target Start/End: Original strand, 11095634 - 11095823
Alignment:
Q  151 tttgtgacagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaagaggtttg 250  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||| || || ||||| ||||||||| ||||||||| |||||||||||| ||||||    
T  11095634 tttgtgacagggttgtgatggatcagttttgttgaacaacactaataccatagtaagtgagcaagatgcacttccaaacataaactcattaaggggtttg 11095733  T
Q  251 gatgttgtgaatcaaatcaagacagcagttgaagaagaatgtcctaacactgtttcttgtgctgatattcttactattgcagctgaagta 340  Q
    |||||||| || ||||||||||||||||||||| | ||||||||   ||||||||||||||||||||||||||||||||||||| |||||    
T  11095734 gatgttgtaaaccaaatcaagacagcagttgaaaatgaatgtccagccactgtttcttgtgctgatattcttactattgcagctcaagta 11095823  T

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Target: chr2; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 157 - 342
Target Start/End: Original strand, 11145245 - 11145430
Alignment:
Q  157 acagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaagaggtttggatgtt 256  Q
    |||||| ||||||| ||||||||||||||| ||||||| ||| ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  11145245 acagggttgtgatgcatcagttttgttgaataacactgctactattgtcagtgaacaagatgcttttccaaacagaaactcattgagaggtttggatgtt 11145344  T
Q  257 gtgaatcaaatcaagacagcagttgaagaagaatgtcctaacactgtttcttgtgctgatattcttactattgcagctgaagtatc 342  Q
    |||||||||||||| |||||||| ||| | |  || |||||||| ||||||||||||||||||||| || |||| |||||| ||||    
T  11145345 gtgaatcaaatcaaaacagcagtagaaaaggcttgccctaacacagtttcttgtgctgatattcttgctcttgctgctgaattatc 11145430  T

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Target: chr2; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 157 - 322
Target Start/End: Original strand, 11149179 - 11149344
Alignment:
Q  157 acagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaagaggtttggatgtt 256  Q
    |||||| ||||||| |||||||||  ||||||| ||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  11149179 acagggttgtgatgcatcagttttactgaacaaaactgataccgttgtgagtgaacaagatgcttttccaaacagaaactcattaagaggtttagatgtt 11149278  T
Q  257 gtgaatcaaatcaagacagcagttgaagaagaatgtcctaacactgtttcttgtgctgatattctt 322  Q
    |||||||||||||| ||||| || ||| | |  ||||||||||| |||||||| ||||||||||||    
T  11149279 gtgaatcaaatcaaaacagctgtggaaaaggcttgtcctaacacagtttcttgcgctgatattctt 11149344  T

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Target: chr2; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 152 - 322
Target Start/End: Original strand, 11136941 - 11137111
Alignment:
Q  152 ttgtgacagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaagaggtttgg 251  Q
    |||| |||||| ||||||| ||||||||| |||||||| |||||||| ||||||||||||||||| || || ||||| |  |||||  || |||||||||    
T  11136941 ttgtaacagggttgtgatgcatcagttttattgaacaaaactgataccattgtgagtgaacaagaagctttcccaaatatcaactctctacgaggtttgg 11137040  T
Q  252 atgttgtgaatcaaatcaagacagcagttgaagaagaatgtcctaacactgtttcttgtgctgatattctt 322  Q
    ||||||||||||||||||| |||||||| ||| | |  ||||||||||| |||||||||||||||||||||    
T  11137041 atgttgtgaatcaaatcaaaacagcagtggaaaaggcttgtcctaacacagtttcttgtgctgatattctt 11137111  T

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Target: chr2; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 157 - 324
Target Start/End: Original strand, 11110094 - 11110261
Alignment:
Q  157 acagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaagaggtttggatgtt 256  Q
    |||||| ||||||| ||||||||||||||| ||||| |  || |||||||||||||||||||| |||||||| |  ||||| |||||||| |||||||||    
T  11110094 acagggttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgtt 11110193  T
Q  257 gtgaatcaaatcaagacagcagttgaagaagaatgtcctaacactgtttcttgtgctgatattcttac 324  Q
     | ||||||||||||||   ||| ||| |||  || ||||| |  |||||||||||||||||||||||    
T  11110194 atcaatcaaatcaagactaaagtggaaaaagcttgccctaatagagtttcttgtgctgatattcttac 11110261  T

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Target: chr2; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 233 - 337
Target Start/End: Original strand, 11171246 - 11171350
Alignment:
Q  233 aactcattaagaggtttggatgttgtgaatcaaatcaagacagcagttgaagaagaatgtcctaacactgtttcttgtgctgatattcttactattgcag 332  Q
    |||||| |||||||||| |||||||||||||||||||| |||||||| ||| | |  ||||||||||||||||||||||||||||||||| || |||| |    
T  11171246 aactcaataagaggtttagatgttgtgaatcaaatcaaaacagcagtggaaaatgcttgtcctaacactgtttcttgtgctgatattcttgctcttgctg 11171345  T
Q  333 ctgaa 337  Q
    |||||    
T  11171346 ctgaa 11171350  T

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Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 158 - 343
Target Start/End: Original strand, 11118099 - 11118284
Alignment:
Q  158 cagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaagaggtttggatgttg 257  Q
    ||||| ||||||| ||||||||||||||| || |||  ||| |||| |||||||||||||||   |||||| | |||||| |||||| | |||||||||     
T  11118099 cagggttgtgatgcatcagttttgttgaataaaacttctactattgcgagtgaacaagatgctggtccaaatataaactccttaagaagattggatgtta 11118198  T
Q  258 tgaatcaaatcaagacagcagttgaagaagaatgtcctaacactgtttcttgtgctgatattcttactattgcagctgaagtatct 343  Q
    | ||||| || || || |  || ||| |||  |||||||| |  |||||||||||||||||||| ||  ||||||||| |||||||    
T  11118199 tcaatcagattaaaactgaggtggaaaaagtttgtcctaataaagtttcttgtgctgatattctcacacttgcagctggagtatct 11118284  T

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Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 157 - 322
Target Start/End: Original strand, 11155562 - 11155727
Alignment:
Q  157 acagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaagaggtttggatgtt 256  Q
    |||||| |||||||  || |||||||||||||| |||| ||| || || || |||||| | || |||||||| |  ||||| ||||||||||||||||||    
T  11155562 acagggatgtgatgcctcggttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttccaaataacaactctttaagaggtttggatgtt 11155661  T
Q  257 gtgaatcaaatcaagacagcagttgaagaagaatgtcctaacactgtttcttgtgctgatattctt 322  Q
    || ||||| ||||| || ||  | |||   |  ||||||||||| |||||||||||||||||||||    
T  11155662 gtaaatcagatcaaaactgctatagaaagtgcttgtcctaacacagtttcttgtgctgatattctt 11155727  T

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Target: chr2; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 270
Target Start/End: Complemental strand, 11192067 - 11191956
Alignment:
Q  159 agggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaagaggtttggatgttgt 258  Q
    |||| ||||||| |||| | ||||||||  || ||||||| || |||||||| ||||  || || ||||| ||||||||| |||||||||||||| ||||    
T  11192067 agggttgtgatgcatcactcttgttgaatgactctgatactatcgtgagtgagcaaggagctttgccaaatagaaactcaataagaggtttggatattgt 11191968  T
Q  259 gaatcaaatcaa 270  Q
    ||||||||||||    
T  11191967 gaatcaaatcaa 11191956  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 322
Target Start/End: Original strand, 11177309 - 11177341
Alignment:
Q  290 tgtcctaacactgtttcttgtgctgatattctt 322  Q
    |||||||||||||||||||||||||||||||||    
T  11177309 tgtcctaacactgtttcttgtgctgatattctt 11177341  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 322
Target Start/End: Complemental strand, 10794110 - 10794028
Alignment:
Q  240 taagaggtttggatgttgtgaatcaaatcaagacagcagttgaagaagaatgtcctaacactgtttcttgtgctgatattctt 322  Q
    ||||||||||| | ||||||||||  ||||||||||  || ||| |||  || ||||| || |||||||||||||||||||||    
T  10794110 taagaggtttgcaagttgtgaatcgtatcaagacagacgtggaaaaagcttgccctaatacagtttcttgtgctgatattctt 10794028  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 260
Target Start/End: Original strand, 11200121 - 11200217
Alignment:
Q  164 tgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaagaggtttggatgttgtga 260  Q
    ||||||| ||| |||||| |||||||||| |  ||||| || || |||||| | || |||||||| |  |||||  |||||||||||||||||||||    
T  11200121 tgtgatgcatcggttttgctgaacaacacagcaacaatcgtaagcgaacaacaagcttttccaaatatcaactccataagaggtttggatgttgtga 11200217  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 51906708 - 51906745
Alignment:
Q  95 aaatgtaaggaacaaaatcatatttaaccctaaaataa 132  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  51906708 aaatgtagggaccaaaatcatatttaaccctaaaataa 51906745  T

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