View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3788_high_18 (Length: 308)
Name: NF3788_high_18
Description: NF3788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3788_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 34888808 - 34889062
Alignment:
| Q |
18 |
taatgttcgcttgggaacttggctatcgagacgtgagttgcagaactgattgttggcacgctacacgtttgattcaagactcaacatctcagtctcataa |
117 |
Q |
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| T |
34888808 |
taatgttcgcttgggaacttggctatcgagacgtgagttgcagaattgattgttgacacgctacacgtttgattcaagactcaacatctcaatctcataa |
34888907 |
T |
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| Q |
118 |
atatgttgagataacggataatatcaaggaggatatgtctagagactagattgtttcgttagtgtggactcacaaagaaagcaaccaatgtgcggacatt |
217 |
Q |
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| T |
34888908 |
atatgttgagataaaagatagtatcaaggaggttatgtctagagactggattgttttctcagtgtggactcacaaagaaagcaaccaatgtgcggacatt |
34889007 |
T |
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| Q |
218 |
ttggcgaaatggcaagcataccaatgtacggattatatggcgaaaatgggaggaa |
272 |
Q |
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| T |
34889008 |
ttggcgaaatggcaagcataccaatgtacggattatatggcgaaaatgggaggaa |
34889062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 37 - 226
Target Start/End: Original strand, 34034675 - 34034864
Alignment:
| Q |
37 |
tggctatcgagacgtgagttgcagaactgattgttggcacgctacacgtttgattcaagactcaacatctcagtctcataaatatgttgagataacggat |
136 |
Q |
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||||||||||||||||||||| |||| |||||||||| | |||| | |||| ||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
34034675 |
tggctatcgagacgtgagttgtagaagtgattgttggaaagctatattattgagtcaagactcaacatctcagcctcataaatatgttgagattacggag |
34034774 |
T |
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| Q |
137 |
aatatcaaggaggatatgtctagagactagattgtttcgttagtgtggactcacaaagaaagcaaccaatgtgcggacattttggcgaaa |
226 |
Q |
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| T |
34034775 |
agtatcaaggagcttgtgtctagagattggattgttttgttaaattggactgaaagagaaagcaaccaatgtgcggattttatggcgaaa |
34034864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 45632665 - 45632775
Alignment:
| Q |
18 |
taatgttcgcttgggaacttggctatcgagacgtgagttgcagaactgattgttggcacgctacacgtttgattcaagactcaacatctcagtctcataa |
117 |
Q |
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||||||| ||||||||| | ||||| | ||||||||||||||||| ||||||| | | |||| | ||||||||||||||||||||||||| || |||| |
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| T |
45632665 |
taatgttagcttgggaaatcggctaccaagacgtgagttgcagaagtgattgtatggaggctatatctttgattcaagactcaacatctcagcctaataa |
45632764 |
T |
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| Q |
118 |
atatgttgaga |
128 |
Q |
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||||||||||| |
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| T |
45632765 |
atatgttgaga |
45632775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 2658588 - 2658478
Alignment:
| Q |
18 |
taatgttcgcttgggaacttggctatcgagacgtgagttgcagaactgattgttggcacgctacacgtttgattcaagactcaacatctcagtctcataa |
117 |
Q |
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||||||| ||||||||| | ||||| | ||||||||||||||||| ||||||| | | |||| | ||||||||||||||||||||||||| || |||| |
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| T |
2658588 |
taatgttagcttgggaaatcggctaccaagacgtgagttgcagaagtgattgtatggaggctatatctttgattcaagactcaacatctcagcctaataa |
2658489 |
T |
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| Q |
118 |
atatgttgaga |
128 |
Q |
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||||||||||| |
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| T |
2658488 |
atatgttgaga |
2658478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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