View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3788_high_21 (Length: 299)
Name: NF3788_high_21
Description: NF3788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3788_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 31454459 - 31454746
Alignment:
| Q |
1 |
agtgtgtttgttaagtgtcttcatgtcactaccagaatttggttcatgaactttaattaattcatctaacttgtttggattctttggtacatgaagtttt |
100 |
Q |
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| T |
31454459 |
agtgtgtttgttaagtgtcttcatgtcactgccagaatttggttcatgaactttaattaattcatctaacttgtttggattctttggtacatgaagtttt |
31454558 |
T |
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| Q |
101 |
attgtatacaaatgtaggcaaaattatttatacaacattaaataattgaaagatagatatgtatctaataaaatttcagattatccaaagtannnnnnna |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31454559 |
attgtataccaatgtaggcaaaattatttatacaacattaaataattgaatgatagatatgtatctaataaaatttcagattatccaaagt-tttttttg |
31454657 |
T |
|
| Q |
201 |
tgtgtatgttcataatatgcattttggagtgttttgtcattctaaacaaataatcaaaccgtactttagatgttgatttttatcctatg |
289 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31454658 |
tgtgtgtgttcataatatgcattttggagtgttttgtcattctaaacaaataatcaaaccgtactttagatgttgatttttatcctatg |
31454746 |
T |
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