View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3788_high_24 (Length: 218)
Name: NF3788_high_24
Description: NF3788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3788_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 7 - 203
Target Start/End: Original strand, 35850458 - 35850654
Alignment:
| Q |
7 |
ttatttatttatttatttccattcaagtggcattaaagttacannnnnnnacttaggcaccaagaatggtacttaaatcatcaatcttggagaccaagct |
106 |
Q |
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| T |
35850458 |
ttatttatttatttctttccattcaagtggcattaaagttacatttttttacttaggcaccaagaatggtacttaaatcatcaatcttggagaccaagct |
35850557 |
T |
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| Q |
107 |
acatgagcaatgaactagttatgccatcaacaaccttaaatacacaaggaagatcatccataactttgaaccagcagcttcaagttaaagataatac |
203 |
Q |
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| T |
35850558 |
acatgagcaatgaactagttatgccatcaacaaccttaaatacacaaggaagatcatccataactttgaatcagcagcttcaagttaaagataatac |
35850654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 63 - 170
Target Start/End: Original strand, 35856893 - 35857000
Alignment:
| Q |
63 |
gcaccaagaatggtacttaaatcatcaatcttggagaccaagctacatgagcaatgaactagttatgccatcaacaaccttaaatacacaaggaagatca |
162 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| |
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| T |
35856893 |
gcaccaagaatggtacttaaatcatcaatctttgagaccaagctacatgagcaatgaattagttatgccatcaacagccataaatacacaaggaagatca |
35856992 |
T |
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| Q |
163 |
tccataac |
170 |
Q |
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|||||||| |
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| T |
35856993 |
tccataac |
35857000 |
T |
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