View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3788_high_25 (Length: 216)
Name: NF3788_high_25
Description: NF3788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3788_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 121495 - 121295
Alignment:
| Q |
1 |
ggtgggggtgggaataaggaattctgactcagaagaagacggtgttgtttgagacaaaacaagaagacgtgagctccagtcgcaagggggcccacgagtc |
100 |
Q |
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| T |
121495 |
ggtgggggtgggaataaggaattctgactcagaagaagacggtgttgtttgagacaaaacaagaagacgtgagctccagtcgcaagggggcccacgagtc |
121396 |
T |
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| Q |
101 |
ctcttgctacgggccttagctggaaccaaaacttccttgttgaatataggattgtttcggttgggttgggaaagctcgcggggttcttcgtcctggtttc |
200 |
Q |
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| T |
121395 |
ctcttgctacgggccttagctggaaccaaaacttccttgttgaatataggattgtttcggttgggttgggaaagctcgcggggttcttcgtcctggtttc |
121296 |
T |
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| Q |
201 |
t |
201 |
Q |
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| T |
121295 |
t |
121295 |
T |
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