View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3788_high_26 (Length: 215)
Name: NF3788_high_26
Description: NF3788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3788_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 38177044 - 38177241
Alignment:
| Q |
1 |
acacactcttgcattgtttccttttagatttttggattctgtggtaatatgtgcttcattatcatcccaacatttgcaattgataacaacgtatcttgtt |
100 |
Q |
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| T |
38177044 |
acacactcttgcattgtttccttttagatttttggattctgtggtaatatctgcttcattatcatcccaacatttgcaattgataacaacctatcttgtt |
38177143 |
T |
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| Q |
101 |
cctttattaacaaaaactaacacataaaggattcgaacatgtgactttcacaatctaagagacacgtgatactcgtgaaaaaatcatcaaaagtgtac |
198 |
Q |
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| T |
38177144 |
cctttattaacaaaaactaacacataaaggattcgaacatgtgactttcacaatctaagagacaggtgatactcgtgaaaaaatcatcaaaagtgtac |
38177241 |
T |
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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 49536775 - 49536866
Alignment:
| Q |
18 |
ttccttttagatttttggattctgtggtaatatgtgcttcattatcatcccaacatttgcaattgataacaacgtatcttgttcctttatta |
109 |
Q |
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| T |
49536775 |
ttcctttgagatttttgcattctgtggtaatatctgcttcattatcctcccaacatttgctattggtaacaacctatcttgttcctttatta |
49536866 |
T |
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