View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3788_high_4 (Length: 469)
Name: NF3788_high_4
Description: NF3788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3788_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 106; Significance: 7e-53; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 50 - 155
Target Start/End: Complemental strand, 40329905 - 40329800
Alignment:
| Q |
50 |
ggaattacatgagcattttcatgttaaaagagtaattagatgagttagcatcccttttgattacttttcaagggatttatgttttgttagacatataatt |
149 |
Q |
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| T |
40329905 |
ggaattacatgagcattttcatgttaaaagagtaattagatgagttagcatcccttttgattacttttcaagggatttatgttttgttagacatataatt |
40329806 |
T |
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| Q |
150 |
actgcc |
155 |
Q |
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|||||| |
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| T |
40329805 |
actgcc |
40329800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 328 - 453
Target Start/End: Complemental strand, 40329626 - 40329501
Alignment:
| Q |
328 |
aatagttattactatgattaaacattnnnnnnnnttaattacctttttgtcacggacgccagtaagaccattttcaagggattcctcaagggccatcagc |
427 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40329626 |
aatagttattactatgattaaacattaaaaaaaattaattacctttttgtcacggacgccagtaagaccattttcaagggattcctcaagggccatcagc |
40329527 |
T |
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| Q |
428 |
tctttgtaattcagtgaggtaatatc |
453 |
Q |
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|||||||||||||||||||||||||| |
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| T |
40329526 |
tctttgtaattcagtgaggtaatatc |
40329501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 228 - 273
Target Start/End: Complemental strand, 40329729 - 40329684
Alignment:
| Q |
228 |
tacatacatttctcttgaacatcctatgcacttccatctgtaggac |
273 |
Q |
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| T |
40329729 |
tacatacatttctcttgaacatcctatgcacttccatctgtaggac |
40329684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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