View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3788_high_5 (Length: 469)
Name: NF3788_high_5
Description: NF3788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3788_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 17 - 453
Target Start/End: Complemental strand, 38929370 - 38928934
Alignment:
| Q |
17 |
cataggccgattgagttgaaataattaggaatcgatgaaaagtgtaaattacttcatgcttcccctttaatgctacatatatcttcacatcatcccaaaa |
116 |
Q |
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| T |
38929370 |
cataggctgattgagttgaaataattaggaatcgatgaaaagtgtaaattacttcatgcttcccctttaatgctagatatatcttcatatcatcccaaaa |
38929271 |
T |
|
| Q |
117 |
tacatgattatttaatccatcaaaggttgatttgcacaacattgtttctaaatatgaaaaacacagctcatgaatgaattcaatgccatacgcatattcc |
216 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38929270 |
tacacgattatttaatccatcaaaggttgatttgcacaacattgtttctaaatatgaaaaacacagctcatgaatgaattcaatgccatacgcatattcc |
38929171 |
T |
|
| Q |
217 |
catacctaatgaaacaaacctatgacgcaatcatcttcaaattaaataaactttatgctaaaagtcttcaacttttaggttaaaattaaagaccatcttc |
316 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38929170 |
catacctaatgaaacaaacctgtgacgcaatcatcttcaaattaaataaactttatgctaaaagtcttcaacttttaggttaaaattaaagaccatcttc |
38929071 |
T |
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| Q |
317 |
acttggttttcatttccataaaatacactttcgtggtgcacaacattttaatgacaaggtacaaataacgtgtccttagccaaaataagaagaaagaaaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38929070 |
acttggttttcatttccataaaatacactttcgtggtgcacaacattttaatgacaaggtacaaataacgtgtccttagccaaaataagaagaaagaaaa |
38928971 |
T |
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| Q |
417 |
aggtattatggtaaacatatttcaaggtgaccatttt |
453 |
Q |
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| T |
38928970 |
aggtattatggtaaacatatttcaaggtgacaatttt |
38928934 |
T |
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