View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3788_high_8 (Length: 412)
Name: NF3788_high_8
Description: NF3788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3788_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 219 - 402
Target Start/End: Original strand, 36945929 - 36946112
Alignment:
| Q |
219 |
ccatgattaatttatttgttaataatattcaaccgcaaataaaatagataactagagttctccctccttccaatttcatcctaaagaaagtgaccattaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36945929 |
ccatgattaatttatttgttaataatattcaaccgcaaataaaatagataactagagttctccctccttccaatttcatcctaaagaaagtgaccattaa |
36946028 |
T |
|
| Q |
319 |
acatagtttttcaaagctgccaaaacagttatcctcccattccaaactaactaacccaacaataatttgaacacatcacctatg |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36946029 |
acatagtttttcaaagctgccaaaacagttatcctcccattccaaactaactaacccaacaataatttgaacacatcacctatg |
36946112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 36945726 - 36945835
Alignment:
| Q |
18 |
acattctacactaacctaaaattgatannnnnnnctctaatttcacatacaactggaaaatgaattccaattttaaattgatctttttaagagtgtgttc |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36945726 |
acattctacactaacctaaaattgatatttttttctctaatttcacatacaactggaaaatgaattccaattttaaattgatctttttaagagtgtgttc |
36945825 |
T |
|
| Q |
118 |
tctctacaag |
127 |
Q |
| |
|
|||||||||| |
|
|
| T |
36945826 |
tctctacaag |
36945835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University