View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3788_low_11 (Length: 389)

Name: NF3788_low_11
Description: NF3788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3788_low_11
NF3788_low_11
[»] chr1 (5 HSPs)
chr1 (126-230)||(50409377-50409481)
chr1 (14-62)||(50409544-50409592)
chr1 (263-309)||(12708082-12708128)
chr1 (263-309)||(12713536-12713582)
chr1 (263-309)||(12717627-12717673)
[»] chr8 (1 HSPs)
chr8 (271-325)||(102344-102398)
[»] chr2 (2 HSPs)
chr2 (268-309)||(7498024-7498065)
chr2 (269-309)||(6666018-6666058)
[»] scaffold0024 (1 HSPs)
scaffold0024 (269-309)||(60467-60507)
[»] chr6 (1 HSPs)
chr6 (269-309)||(19789109-19789149)
[»] chr4 (1 HSPs)
chr4 (271-323)||(49371069-49371121)


Alignment Details
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 126 - 230
Target Start/End: Complemental strand, 50409481 - 50409377
Alignment:
Q  126 gtggtcaacgtggatttgcaagtatagtggcatggcccttgtgggctttaaaagttaggcctggcccataaacttaattgggcctaagagtaagctctgc 225  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  50409481 gtggtcaacgtggatttgcaagtacagtggcatggcccttgtgggctttaaaagttaggcctggcccataaagttaattgggcctaagagtaagctctgc 50409382  T
Q  226 tgcat 230  Q
    |||||    
T  50409381 tgcat 50409377  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 50409592 - 50409544
Alignment:
Q  14 gcacagagagaaaaaggaggtgaagtgagtgtgaattgggaaagacaac 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  50409592 gcacagagagaaaaaggaggtgaagtgagtgtgaattgggaaagacaac 50409544  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 12708082 - 12708128
Alignment:
Q  263 ttttaaaagagtaatgttatttgtagaaccattttattacaactttt 309  Q
    ||||||||||| |||| |||||||||||||||||| | |||||||||    
T  12708082 ttttaaaagagaaatgatatttgtagaaccattttctaacaactttt 12708128  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 12713536 - 12713582
Alignment:
Q  263 ttttaaaagagtaatgttatttgtagaaccattttattacaactttt 309  Q
    ||||||||||| |||| |||||||||||||||||| | |||||||||    
T  12713536 ttttaaaagagaaatgatatttgtagaaccattttctaacaactttt 12713582  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 12717627 - 12717673
Alignment:
Q  263 ttttaaaagagtaatgttatttgtagaaccattttattacaactttt 309  Q
    ||||||||||| |||| |||||||||||||||||| | |||||||||    
T  12717627 ttttaaaagagaaatgatatttgtagaaccattttctaacaactttt 12717673  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 325
Target Start/End: Original strand, 102344 - 102398
Alignment:
Q  271 gagtaatgttatttgtagaaccattttattacaacttttagcacaaccttctttt 325  Q
    |||||||| |||||||| ||||||||| |||||||||||||  ||||||||||||    
T  102344 gagtaatgatatttgtacaaccattttgttacaacttttaggccaaccttctttt 102398  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 7498065 - 7498024
Alignment:
Q  268 aaagagtaatgttatttgtagaaccattttattacaactttt 309  Q
    |||||| |||| |||||||| |||||||||||||||||||||    
T  7498065 aaagagaaatgatatttgtacaaccattttattacaactttt 7498024  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 309
Target Start/End: Original strand, 6666018 - 6666058
Alignment:
Q  269 aagagtaatgttatttgtagaaccattttattacaactttt 309  Q
    ||||| |||| |||||||| |||||||||||||||||||||    
T  6666018 aagagaaatgatatttgtacaaccattttattacaactttt 6666058  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 309
Target Start/End: Original strand, 60467 - 60507
Alignment:
Q  269 aagagtaatgttatttgtagaaccattttattacaactttt 309  Q
    ||||| |||| |||||||| |||||||||||||||||||||    
T  60467 aagagaaatgatatttgtacaaccattttattacaactttt 60507  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 309
Target Start/End: Complemental strand, 19789149 - 19789109
Alignment:
Q  269 aagagtaatgttatttgtagaaccattttattacaactttt 309  Q
    ||||| |||| |||||||| |||||||||||||||||||||    
T  19789149 aagagaaatgatatttgtacaaccattttattacaactttt 19789109  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 323
Target Start/End: Complemental strand, 49371121 - 49371069
Alignment:
Q  271 gagtaatgttatttgtagaaccattttattacaacttttagcacaaccttctt 323  Q
    |||||||| |||||||| |||||| |||| ||||||||| | |||||||||||    
T  49371121 gagtaatgatatttgtacaaccatgttatgacaacttttgggacaaccttctt 49371069  T

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