View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3788_low_12 (Length: 382)
Name: NF3788_low_12
Description: NF3788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3788_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 17 - 370
Target Start/End: Original strand, 50410141 - 50410496
Alignment:
| Q |
17 |
agatggagatgagtttgaggataaaccaatggaggataattcttctttacatcatgctcttaaggaatcaattccaaccatatggagagttaaatgcact |
116 |
Q |
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| T |
50410141 |
agatggagatgagtttgaggataaaccaatggaggataattcttctttacatcatgctcttaaggaatcaattccaaccatatggagagttaaatgcact |
50410240 |
T |
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| Q |
117 |
gtatgtcacctgaaatgcgactttgtcattttgttaaccatagtttctagcattgcatttataannnnnnnggggcttctataccatgaagcacatacac |
216 |
Q |
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| T |
50410241 |
gtatg-cacctgaaaagcgactttgtcattttgttaaccatagtttctagcattgcatttataatttttttggggcttctataccatgaagcacatacac |
50410339 |
T |
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| Q |
217 |
agtcacggacacactgacacatcgacattggtaataatttaagaaaacta---aagtatcggtgttgtgttagtgtcagtcggatacaccttcgatcaga |
313 |
Q |
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| T |
50410340 |
agtcacggacacactgacacattgacactggtaataatttaagaaaactacataagtgtcggtgttgtgttagtgtcggtcggatacaccttcgatcaga |
50410439 |
T |
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| Q |
314 |
agtttcggtgcttcgggtcttctatattcctttgttaagctttgtttgccacaggtt |
370 |
Q |
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| T |
50410440 |
agtttcggtgcttcgggtcttctatattcctttgttaagctttgtttgccacaggtt |
50410496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 18750863 - 18750899
Alignment:
| Q |
227 |
acactgacacatcgacattggtaataatttaagaaaa |
263 |
Q |
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| T |
18750863 |
acactgacacatcgacaacggtaataatttaagaaaa |
18750899 |
T |
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